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Job:
Ensembl Plants Senior Bioinformatician
ebi
embl
genomics
ensembl
2 days ago by
Ben_Ensembl
★ 2.4k
0
votes
0
replies
234
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Job:
Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes
DevOps
executor
AWS
Snakemake
updated 8 days ago by
Michael
54k • written 8 days ago by
jonrkarr
▴ 100
0
votes
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186
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Job:
Ensembl Outreach Project Leader
ebi
embl
genomics
ensembl
2 days ago by
Ben_Ensembl
★ 2.4k
0
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0
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185
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Job:
Bioinformatics PhD position in Aarhus, Denmark
PhD
Genomics
Cancer
updated 13 days ago by
Ram
43k • written 15 days ago by
besen
• 0
0
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0
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262
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Job:
PhD in bioinformatics / computational biology
NGS
Omics
Evolution
Aging
16 days ago by
Arne.Sahm
• 0
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1
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2.4k
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Job:
Full Stack Web Developer - Cambridge, UK
JavaScript
Python
Visualisation
written 8.4 years ago by
Richard Smith
▴ 400
2
votes
1
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606
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Job:
Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
19 days ago by
Shicheng Guo
★ 9.4k
1
vote
0
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165
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Job:
Job Opening - Fred Hutch - Director of Training & Community
fred-hutchinson
updated 29 days ago by
Ram
43k • written 4 weeks ago by
Fred Hutch (Recruiting)
▴ 20
0
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0
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247
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Job:
Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science
genomics
postdoc
updated 19 days ago by
Ram
43k • written 6 weeks ago by
besen
• 0
0
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0
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2.0k
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Job:
Bioinformatics Research Postdoc
RNA-Seq
genome
updated 13 days ago by
Ram
43k • written 8.2 years ago by
ggrant543
• 0
10 results • Page
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Recent Votes
Answer: Fetch table from clinvar database according to a list of rsid
Comment: Fetch table from clinvar database according to a list of rsid
Comment: Adding CB tag to bam file
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
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Recent Replies
Answer: Finding orthologs between genome error
by
Adrian Altenhoff
★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
by
dsull
★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
$ cat input.rs rs11203366 rs11203367 rs874881 rs776453694 rs80324279 rs324420 rs112766203 wget -…
Comment: Highest variable features in single cell data
by
ATpoint
82k
> and these cells are not even in a single cluster. What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
Bertalan_Takacs
▴ 90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
by
b.contreras.moreira
▴ 170
You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM
by
VITALA
• 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
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