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kilcdincer
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Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis?
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> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST
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This has been discussed [many times][1]
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I think when you give indent to seuObj :
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In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
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In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
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> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended
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I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K).
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It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
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you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator :
VariantAnnotator …
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Hi, I was wondering if you have found a solution to this? Thanks!
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cross posted in bioconductor.
[https://support.bioconductor.org/p/9157968/][1]
[1]: https://support.bioconductor.org/p/9157968/
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Which normalization method did you use for your data? I am guessing you had used SCTransform normalization for your data. Can you plot usin…
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Hi Dan,
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