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114
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following Kallisto with DESeq2 using tximport package
tximport ensembl deseq2 kallisto ucsc written 4.7 years ago by Assa Yeroslaviz1.4k • updated 4.6 years ago by Michael Love2.1k
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ENSEMBL Transcript_Accession ID conversion
ensembl sleuth kallisto rna-seq written 4.5 years ago by dinindu.senanayake0 • updated 3.3 years ago by WouterDeCoster44k
4
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3.5k
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differential gene expression using sleuth
sleuth kallisto rna-seq written 4.5 years ago by frida.danielsson40 • updated 4.4 years ago by cpcantalapiedra140
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Using 'tximport' library for downstream DGE after quantifying with Kallisto
tximport R kallisto rna-seq written 4.4 years ago by Sinji3.0k • updated 4.4 years ago by Michael Love2.1k
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Is Sleuth a good package?
R sleuth kallisto rna-seq written 4.0 years ago by SmallChess530
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14
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11 follow
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Sleuth: Combined lrt and wt tests, clustered heatmap
R sleuth kallisto rna-seq heatmap written 3.8 years ago by bioinfo8120 • updated 2.8 years ago by erdiazval50
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kallisto to metaseqR
R next-gen kallisto rna-seq written 3.8 years ago by bioinfo8120
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featureCounts with pseudobam
featurecounts salmon rna-seq pseudobam kallisto written 3.7 years ago by mccormack40 • updated 5 months ago by ATpoint38k
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RNASeq reads from two bacterial species
trinity co-culture kallisto rsem rna-seq written 3.6 years ago by alyamahmoud0 • updated 3.6 years ago by h.mon31k
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Help for finding the right FASTA file for kallisto
fasta kallisto rna-seq written 3.4 years ago by swamyvinny20 • updated 3.4 years ago by Sreeraj Thamban160
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4.9k
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9 follow
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kallisto: strand-specific and fragment length calculation
kallisto rna-seq written 3.4 years ago by user230613280 • updated 3.4 years ago by pmelsted110
6
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8 follow
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Getting average fragment length for single end reads
differential expresion kallisto rna-seq written 3.3 years ago by Sreeraj Thamban160 • updated 2.3 years ago by dark.lord30
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