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<prev • 313 results • page 1 of 11 • next >
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Interpretation of "less" and "greater" after running gage with `same.dir = TRUE`
pathways gage kegg rna-seq functional_analysis written 8 days ago by tmms • 10
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Safe to convert entrez gene id to ensembl gene id
biomart rna-seq go kegg written 13 days ago by tmms • 10 • updated 13 days ago by mark.ziemann • 1.2k
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60
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Getting external ids with Bio.KEGG.REST
ensembl kegg written 20 days ago by laalice3 • 0
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Converting REFSeq IDs to Entrez IDs for KEGG analysis - "geneid of incorrect length"?
R deseq kegg edger rna-seq written 3 months ago by saw44 • 10 • updated 5 weeks ago by Biostar ♦♦ 20
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KEGG pathway for esophageal cancer and liver cancer
escc kegg liver cancer written 6 weeks ago by Shicheng Guo • 8.0k
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KEGG pathway enrichment analysis for wheat and barley
wheat kegg barley written 3 months ago by harrypotterandsbt • 70
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5 follow
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How to get lists of genes for kegg pathways
gene kegg written 3 months ago by valerie • 80 • updated 3 months ago by Haci • 220
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KEGG and metacyc database downloads
metacyc kegg download written 3 months ago by allerdrengen55 • 20 • updated 3 months ago by Amar • 640
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Mapping Gene Annotations to COG Classifications
gene annotation cog prokka kegg written 3 months ago by ksipes • 0 • updated 3 months ago by Mensur Dlakic • 3.3k
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What's the difference between enrichKEGG and gseKEGG
clusterprofiler kegg written 3 months ago by ben.kunfang • 10 • updated 3 months ago by h.mon ♦ 29k
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Finding the "end point" of biological pathways
pathway automation reactome kegg written 3 months ago by s.may-wilson • 30
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What is the current state-of-the-art for differential abundance in microbiome pathway analysis?
microbiome deseq2 pathway analysis kegg written 3 months ago by ariel • 80
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KGML to SVG
pathway automation kegg svg written 4 months ago by restonpiston • 30
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How to perform KEGG enrichment analysis for DE genes from a de-novo transcriptome?
kegg enrichment kegg written 4 months ago by Light92 • 20
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Comparing pathway names between online databases
pathways wikipathways reactome kegg written 4 months ago by s.may-wilson • 30
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Retrieving biological knowledge for molecular property prediction
properties machine-learning kegg molecules drugs written 6 months ago by lorenzo.fabbri-1 • 0 • updated 6 months ago by Brice Sarver • 3.5k
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KEGG pathway visualization AND Cytoscape
kegg written 6 months ago by pixie@bioinfo • 1.4k • updated 6 months ago by sgoetz123 • 20
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StringDB get enrichment KEGG
enrichment kegg R written 22 months ago by Pin.Bioinf • 270 • updated 6 months ago by gragedaa • 0
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BlastKoala missing modules
blastkoala kegg keggmapper written 6 months ago by jpaulose • 0
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KEGG rpairs alternative: reduce reactions to primary metabolites (remove cofactors)
kegg metabolites rpair written 7 months ago by davidtmscott • 80
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Metdraw tool to compare metabolic paths
kegg graph metdraw written 8 months ago by dnnxl15 • 0 • updated 7 months ago by Biostar ♦♦ 20
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How to convert SBML or BioPAX format into KGML (KEGG) format
kgml biopax sbml kegg written 2.9 years ago by reachtoskumar • 10 • updated 7 months ago by liuhaizhou • 0
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Retrieve the direction and reversibility of KEGG reactions
reactions kegg written 7 months ago by davidtmscott • 80
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Converting Reactome SMBL/Biopax to KGML format (mainly for EnrichmentBrowser)
kgml biopax kegg enrichmentbrowser smbl written 23 months ago by v36nguyen • 10 • updated 7 months ago by liuhaizhou • 0
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Options for labeling pathways with higher-order ontologies
pathways gene ontology kegg go biocarta written 7 months ago by Vincent Laufer • 1.1k
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REVIGO equivalent for Reactome/KEGG/WikiPathways
wikipathways reactome pathway analysis kegg written 8 months ago by Maciej Motyka • 20 • updated 8 months ago by Biostar ♦♦ 20
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Pathway annotation using sequence alignment
alignment kegg blastkoala written 2.3 years ago by sharmatina189059 • 40 • updated 8 months ago by Biostar ♦♦ 20
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Annotating entrez Ids with the kegg pathway they are involved in
kegg pathway R semantic similarity entrez kegg written 8 months ago by user_g • 20
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EC2KEGG tool to compare metabolic paths
consult metabolic path kegg written 8 months ago by dnnxl15 • 0 • updated 8 months ago by Biostar ♦♦ 20
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Number of genes in a kegg pathway
pathway genes kegg rna-seq written 8 months ago by ignazio.fontana • 0 • updated 8 months ago by predeus • 1.3k
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