kissde Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

922

views

answers

kissplice SNP output and kissDE runtime

R kissde rna-seq snp kissplice written 2.3 years ago by erica • 10 • updated 2.3 years ago by clara.benoitp • 10

votes

answer

815

views

answer

kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."

R kissde snp kissplice written 2.7 years ago by TrentGenomics • 30

votes

answers

817

views

answers

problem in installing kissDE

snp kissde written 2.7 years ago by majeedaasim • 40 • updated 2.7 years ago by RamRS ♦ 27k

votes

answers

911

views

answers

kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 3.2 years ago by Zoe • 0

vote

answers

1.4k

views

answers

Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 3.8 years ago by c.evang • 10 • updated 3.6 years ago by vincent.lacroix • 130

votes

answers

1.1k

views

answers

Error running KissDE

kissde kissplice written 3.8 years ago by c.evang • 10

Recent Votes

Recent Locations • All »

University Park, USA, 10 minutes ago
SouthKorea, 13 minutes ago

Recent Awards • All »

Supporter to MaxF • 40
Autobiographer to ryan.borotra • 0
Scholar to antonioggsousa • 460
Scholar to Mensur Dlakic • 5.8k
Popular Question to rse • 90
Teacher to Kevin Blighe ♦ 61k

Recent Replies

C: rsem-calculate-expression error SAM/BAM file declares more reference sequences t by gabrielaflgn • 0
I'm going through the same problem. Did any of you solve it?
C: Convert Logp value to P value by devarora • 150
Dear Sir, I tried the above method but it leads to P-value greater than 1.
C: Convert Logp value to P value by devarora • 150
It works smoothly. Thank you so much.
C: Standardizing 3rd party GFF3 file by Anand Rao • 300
Probably workarounds, because real solutions would in the strict sense ideally need to use only c...
C: Intersecting unbalanced BED files, normalizing for one by yztxwd • 390
you can use `bedtools intersect` with `-wa` option to report the intersected promoter for each in...
C: Standardizing 3rd party GFF3 file by genomax ♦ 85k
Are those logical solutions that you are proposing for validation or just workarounds? Now you kn...
C: bowtie2 '-a' does not return all alignments by Istvan Albert ♦♦ 84k
Short read aligners were never designed to be mathematically optimal or to produce all equally sc...
C: Remove reads where quality score length does not equal sequence length by MatthewP • 670
Can you post one of such record? This sounds strange.
C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts' by Anand Rao • 300
Sorry [Juke][1], I missed your response here. Some lingering annotation file problems have prompt...
C: (EDITED) Aligning complete viral RNAs by oddjobs • 0
Right. I am trying to align a finished sequence for a virus to the virus' reference sequence. So ...
C: Counting single-cell ATAC fragments at peaks on BED file by geek_y ♦ 11k
Accept the answer so that it wont bump in the future as unanswered.
A: WGCNA analysis for gene of interest by geek_y ♦ 11k
Its not recommended to filter genes other than removing very lowly expressed genes (that could be...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1270 users visited in the last hour