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661

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kissplice SNP output and kissDE runtime

R kissde rna-seq snp kissplice written 15 months ago by erica • 10 • updated 15 months ago by clara.benoitp • 10

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597

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kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."

R kissde snp kissplice written 19 months ago by TrentGenomics • 30

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584

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problem in installing kissDE

snp kissde written 20 months ago by majeedaasim • 30 • updated 20 months ago by RamRS ♦ 22k

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669

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kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 2.1 years ago by Zoe • 0

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1.2k

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 2.8 years ago by c.evang • 10 • updated 2.6 years ago by vincent.lacroix • 80

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850

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Error running KissDE

kissde kissplice written 2.7 years ago by c.evang • 10

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Recent Replies

A: How to order bars in barplot in ggplot? by zx8754 ♦ 7.5k
Change the order of *factors* then plot: toplot.N$set <- factor(toplot.N$set, ...
C: Match column row wise and do calculations by zx8754 ♦ 7.5k
You probably need: GenomicRanges::reduce() GenomicRanges::findOverlaps() Or from *data....
A: Intron finder for 3' UTR sequences (non-model organism)? by kristoffer.vittingseerup • 1.9k
Finding 3'UTR intron retention might be problematic due to the biological control mechanism calle...
C: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ? by John Marshall ♦ 1.6k
This spec infelicity is now .
C: Intron finder for 3' UTR sequences (non-model organism)? by kristoffer.vittingseerup • 1.9k
Is the transcritome fasta not just the nucleotide file with the sequence corresponding to the GFF...
C: limma voom - mean variance trend by kristoffer.vittingseerup • 1.9k
You are right that looks strange! Seems like you mainly have very (!) large count? Also did you u...
C: Supress/silence warnings from BioPython by Mark • 0
I solved it with Joe's @jrj.healey help above like this: from Bio import BiopythonWarning ...
C: Testing Distances in Phylogenetic Trees by ResearchR • 60
The tree represents the development of a tumor in comparison to control tissue. The control tissu...
C: How to transfer big sequencing data abroad on internet? by arup • 1.4k
Compress the files and upload them to institute FTP server or any cloud storage platform.
A: How to obtain distinct/uniqe rows from GenomicRanges object by zx8754 ♦ 7.5k
Use *unique* as usual (**no** need for *tidyverse*): unique(gr) # GRanges object with 3 ...
A: Averaging multiple columns by zx8754 ♦ 7.5k
Using **R**: # example data df1 <- read.table(text = " A 1 1 1 1 A 1 3 1 1 ...
C: SQL configuration for sequence data by Jean-Karim Heriche ♦ 19k
BLOB data types are normally used to store binary data (i.e. byte strings, e.g. images). They are...

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