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kissplice SNP output and kissDE runtime

R kissde rna-seq snp kissplice written 2.9 years ago by erica • 10 • updated 2.9 years ago by clara.benoitp • 10

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kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."

R kissde snp kissplice written 3.3 years ago by TrentGenomics • 30

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problem in installing kissDE

snp kissde written 3.3 years ago by majeedaasim • 50 • updated 3.3 years ago by Ram ♦ 32k

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kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 3.8 years ago by Zoe • 0

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 4.5 years ago by c.evang • 10 • updated 4.2 years ago by vincent.lacroix • 130

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1.1k

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Error running KissDE

kissde kissplice written 4.4 years ago by c.evang • 10

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Recent Replies

C: Ggplot2 + Gene Labels by kstangline • 20
Thanks for the reply! I want to plot all the genes, and I only want to label a few (about 10 gene...
C: Ggplot2 + Gene Labels by loughrae • 20
Have you tried running that and it didn’t work? I can’t tell what exactly you’re asking. Do you w...
A: possible to convert hg19 coordinated position to hg38 coordinated position?? by Sam • 3.3k
What you are looking for is [LiftOver][1] [1]: http://genome.ucsc.edu/cgi-bin/hgLiftOver
C: getting fastq ID with SNPs by bitpir • 190
Programmatically. I just need the readname and the nucleotide that it is calling at a particular ...
C: PSSM (Position Specific Scoring Matrix) from NCBI convert to matrix format by leeeiqi • 0
Hello！Do you have a script for batch conversion of Scoremat.asn to PSSM matrix format? Thank you ...
C: getting fastq ID with SNPs by GenoMax ♦ 96k
Do you want to do that programmatically or just for a few ID's?
C: Enrichment Analysis, Clustering and Scoring with pathfindR by volkanergin • 0
Hi, sorry for the late reply. It seems ok so far, now working. I guess pathfindR doesn't like a s...
C: Link two proteins in Pymol by Mensur Dlakic • 9.0k
Yes, that's the idea. I see now that SwissModel may not be able to use multiple templates, so Mod...
C: Getting 0 bytes or 1 line from galaxy by dreamfeathers08 • 10
Hi, Noted! Thank you!
C: Getting 0 bytes or 1 line from galaxy by dreamfeathers08 • 10
Hi, I'll have a look at it. Thank you.
C: Link two proteins in Pymol by Hansen_869 • 20
Thanks for your response, I think I will check out Swiss-model for this. What exactly will aligni...
C: Cytoscape crashes when importing a network with Cy3D as renderer by lundgrenolof • 0
@scooter, the same thing happens when I use java 11. olof@olof-ubuntu:~$ java -version o...

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