Showing:
kissde • reset3
votes
2
answers
766
views
2
answers
written 19 months ago by
erica • 10
• updated
19 months ago by
clara.benoitp • 10
0
votes
0
answers
656
views
0
answers
written 23 months ago by
majeedaasim • 40
• updated
23 months ago by
RamRS ♦ 24k
1
vote
2
answers
1.2k
views
2
answers
written 3.1 years ago by
c.evang • 10
• updated
2.9 years ago by
vincent.lacroix • 110
Recent Votes
- C: Should I keep or remove the alignment reads whose mate reads mapped to a differe
- A: How to construct co-expression network with correlation matrix?
- A: Linux: move/copy same name files to one folder
- A: Linux: move/copy same name files to one folder
- A: Linux: move/copy same name files to one folder
- C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
- C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
Recent Locations •
All »
- Sweden, 12 minutes ago
- France, 24 minutes ago
Recent Awards • All »
- Scholar to Pierre Lindenbaum ♦ 123k
- Scholar to zdong • 0
- Teacher to Kevin Blighe ♦ 49k
- Teacher to Kevin Blighe ♦ 49k
- Supporter to egeulgen • 880
- Scholar to igor ♦ 8.6k
Recent Replies
-
A: Why EBSEQ and DEseq2 gives different number of DE genes by
swbarnes2 ♦ 6.7k
50 versus 160? That's pretty close. 50 versus 5000 would be more worrisome. My guess is, those...
-
C: Gene Set Enrichment Analysis by
V • 110
I would not use GSEA as it is quite unreliable in my opinion. If you want to do a standard gene e...
-
C: PCA plot interpretation from scRNA data set by
V • 110
My question as someone who analysis scRNAseq data, is why are you even spending time on looking a...
-
A: How to know does DNA variant sequencing (eg. somatic variant) affect to Protein by
V • 110
I don't think there is a direct way of answering this. You can always check the corresponding am...
-
A: RNA-seq low alignment rate/ please help with the parameters by
V • 110
How big were your fragments? It was Xbp-paired end sequencing? If you did something like 100bp or...
-
C: RNA-seq low alignment rate/ please help with the parameters by
genomax ♦ 73k
> NuGEN reagents and should be rRNA depleted and directional. Since you have only ~40% align...
-
C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality' by
genomax ♦ 73k
Those two options are not available in `bbduk.sh` so this seems to be a case of bbduk not printin...
-
C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality' by
michael.ante • 3.4k
You have the read ID, check in each step if this asynchronous base/quality ratio appeared. Try to...
-
C: Mapping probe ids in microarray data to gene ids by
mkgupta.bioinfo • 140
Glad to know the answer :)
-
C: Interpret genome alignment results by
Joe ♦ 14k
It doesn't make any sense to translate the whole genome, and consequently even less to align/comp...
-
C: Interpret genome alignment results by
el97004 • 10
Thank you that makes sense. But how about in less extreme case scenarios, for example if the thir...
-
C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality' by
Anand Rao • 240
I agree, Michael. Here are my steps including and leading to the BBDUK decontamination step(s):...
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 765 users visited in the last hour