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kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 11 weeks ago by Zoe • 0

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 10 months ago by c.evang • 10 • updated 7 months ago by vincent.lacroix • 40

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Error running KissDE

kissde kissplice written 9 months ago by c.evang • 10

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Recent Replies

A: why would tped file from command plink --bfile [extenstion] --recode --tranpose by alejandrotola • 0
Hei i got the same problem in R genABEL. **Error in convert.snp.ped(pedfile = "xxx.txt", mapfile...
C: assessing data quality of matched samples from different NGS platforms by F • 2.6k
Thank you, I was ask this question. I think they mean assessing quality of data in matched sample...
A: using blastall option in terminal by h.mon ♦ 7.2k
You either download and install [BLAST legacy][1], or adapt your command-line to BLAST+. With `bl...
C: tools for variant annotations by world_genesis • 0
I asked for the "lesser" known ones since I did not want to miss out any from my list. The ones m...
C: tools for variant annotations by h.mon ♦ 7.2k
Which are the greater known tools for variant annotation that you do know specifically? I know o...
C: assessing data quality of matched samples from different NGS platforms by genomax ♦ 30k
Why not use FastQC/MultiQC? Quality in what terms? Raw data/alignments/DE results?
C: Method for meta-analysis by WouterDeCoster ♦ 20k
> impaired design Please elaborate on your experimental design. You are wasting your and my t...
C: Cis- eQTL Question by WouterDeCoster ♦ 20k
Then it makes sense to look up how published methods do their job, and try to replicate that.
C: vcf-consensus wrong bases by Pierre Lindenbaum ♦ 96k
give us an example.
C: Reference for Salmon by jh • 10
Thank you so much!! :D
C: AnnotationDbi using UCSC annotation by jadepinket • 10
Below is the error I get, any suggestions would be helpful res$symbol <- mapIds(TxDb.Hsapiens...
C: Are the UCSC genome assemblies non-redundant? How do I get a non-redundant genom by rmartson • 0
Alright, I'll download the fasta file with random regions for the human genome as well then.

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