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266

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kissplice SNP output and kissDE runtime

R kissde rna-seq snp kissplice written 11 weeks ago by erica • 10 • updated 11 weeks ago by clara.benoitp • 10

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377

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kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."

R kissde snp kissplice written 7 months ago by TrentGenomics • 30

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330

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problem in installing kissDE

snp kissde written 7 months ago by majeedaasim • 20 • updated 7 months ago by Ram ♦ 15k

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430

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kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 13 months ago by Zoe • 0

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901

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 21 months ago by c.evang • 10 • updated 18 months ago by vincent.lacroix • 80

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611

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Error running KissDE

kissde kissplice written 21 months ago by c.evang • 10

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Recent Replies

A: KOBAS web server by jkofsky • 10
Looks like this issue is happening again... any tips from last time? I would assume they know and...
A: how to make this plot for mutation in paired samples? by igor ♦ 6.2k
OncoPrinter (web-based): http://www.cbioportal.org/oncoprinter.jsp ![enter image description here...
A: Estimating cross contamination in a set of BAMS by igor ♦ 6.2k
A really nice method is [GATK CalculateContamination][1] and gives you an exact contamination est...
C: Simple visual output of Pairwise Sequence alignment by genomax ♦ 49k
https://www.biostars.org/u/47293/ : https://www.biostars.org/p/309884/
C: Clustering of DAVID gene enrichment results from gene expression studies by krushnach80 • 300
@Kevin you have a topMatrix object here , but i did clustering and taking some of the clustered ...
C: how to make this plot for mutation in paired samples? by WouterDeCoster ♦ 29k
https://www.biostars.org/p/309884/
C: Simple visual output of Pairwise Sequence alignment by cschu181 • 1.2k
Could you post an image, would be interesting to see how it looks like.
A: SNPs density with sliding windows by Pierre Lindenbaum ♦ 108k
bedtools [intersect][1] with option -c -c For each entry in A, report the number of overlap...
C: Remove extra sequences without unique names from fasta by Pierre Lindenbaum ♦ 108k
> I concatenate all hundreds of my fasta files into ONE fasta file? ' just testing that runn...
C: What is the recent preference for RNA-seq read deposition perior to publication by i.sudbery • 2.3k
I always deposit in GEO (which automatically forwards to SRA/ENA). I've never had any stress with...
C: GDC server down??? by giselesimasrs • 0
I'm having the same problem (I was using it last week without any problems) My r-base package ve...
C: What is the recent preference for RNA-seq read deposition perior to publication by genomax ♦ 49k
Deposition to ENA may be relatively less painful than SRA. But in the end be ready to spend some ...

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