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453

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kissplice SNP output and kissDE runtime

R kissde rna-seq snp kissplice written 8 months ago by erica • 10 • updated 8 months ago by clara.benoitp • 10

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479

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kissDE error during 'diffExpressedVariants' step: "Error in data.frame..."

R kissde snp kissplice written 13 months ago by TrentGenomics • 30

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464

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problem in installing kissDE

snp kissde written 13 months ago by majeedaasim • 20 • updated 13 months ago by RamRS ♦ 19k

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536

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kissDE: How do I use diffExpressedVariants with some zero counts in my data?

R diffexpressedvariants rna-seq kissde written 19 months ago by Zoe • 0

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1.0k

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Error in running "diffExpressedVariants" function in kissDE R package

kissplice snp kissde written 2.3 years ago by c.evang • 10 • updated 2.0 years ago by vincent.lacroix • 80

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733

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Error running KissDE

kissde kissplice written 2.2 years ago by c.evang • 10

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Recent Replies

C: ERROR MESSAGE: QD annotation at VariantRecalibrator by toralmanvar • 720
Have you validated the input VCFs with ValidateVariants?
C: how many files are generated after sorting of .bam file ? by iqra • 0
samtools 1.7 Using htslib 1.7-2 Copyright (C) 2018 Genome Research Ltd.
C: how many files are generated after sorting of .bam file ? by WouterDeCoster ♦ 35k
Are you using the latest version of samtools?
A: how many files are generated after sorting of .bam file ? by iqra • 0
indexing of .bam file is giving this error . how it would be handle ? samtools index my_sorted.ba...
A: Which tool can remove SignalP predicted signal peptides from FASTA file? by arman.vinck • 0
Alright! I have to process this information in order for me to fully understand what you've done ...
C: The evidence of the gene annotation by toralmanvar • 720
According to me, both can work as evidence. But in the case of blastx result, those are only anno...
C: how many files are generated after sorting of .bam file ? by cpad0112 • 10k
either you can furnish a temporary directory for storing temporary files or wait till the process...
C: GRCH38 counts significantly lower than for version 37? by ab123 • 40
I am not entirely sure if version 38 really would only contain 17,000 genes? It refers to the fi...
C: Confused about how to generate a consensus sequence after bwa by finswimmer ♦ 8.0k
Make sure you have the most recent version of `bcftools` (v1.9). $ bcftools mpileup -Ou -f ...
C: Count the number of homozygous and heterozygous variants in VCF file by finswimmer ♦ 8.0k
Hello https://www.biostars.org/u/42750/ , what I meant was an example of your input file. fin ...
A: How to extract information from RNA-seq data? by k.kathirvel93 • 150
Since you have done DE Analaysis, now you have some list of miRNAs and mRNAs. So, Perform targe...
C: Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling? by toralmanvar • 720
https://www.biostars.org/p/243387/

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