Showing: kmerreset
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 6 weeks ago by gustavo.teixeira0 • updated 6 weeks ago by ATpoint18k
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159
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Explanation for kmer enrichment after skewer trimming of the RNA-seq reads
skewer kmer fastqc written 4 months ago by tobytaogf0 • updated 4 months ago by genomax68k
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251
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Extracting related sequences from a FASTA file
sequence comparizon data mining kmer written 6 months ago by DataFanatic130 • updated 4 months ago by Biostar ♦♦ 20
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Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 4.8 years ago by Rayan Chikhi1.4k • updated 5 months ago by martinsteinegger20
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6 follow
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Finding 16 mer not present in GRCh38
genome kmer written 6 months ago by Srw30 • updated 5 months ago by Kevin Blighe44k
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k mer analysis
k-mer assembly analysis kmer written 6 months ago by Mostafa10
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Abyss (Optimizing the parameter k)
assembly kmer abyss written 8 months ago by Mbillah110 • updated 6 months ago by Biostar ♦♦ 20
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Bulk primer design
fasta bulk primers kmer written 6 months ago by DataFanatic130 • updated 6 months ago by Pierre Lindenbaum121k
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error while creating kover dataset from fastq
kmer kover written 8 months ago by ekaterina.avershina0 • updated 8 months ago by Alexandre Drouin50
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Increase the kmer size in IDBA_UD?
illumina ngs idba_ud idba kmer written 13 months ago by mail2steff50 • updated 13 months ago by Sej Modha4.2k
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7 follow
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Judging best assembly
assembly cut off kmer coverage velvet written 14 months ago by deepti1rao20 • updated 14 months ago by Rohit1.3k
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Estimating genome size from k-mer histograms...
kmer next-gen genome size written 5.0 years ago by ab.tsubaki50 • updated 14 months ago by h.mon26k
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kmer distribution curve shifts to right of poisson distribution
kmer poisson distribution written 15 months ago by deepti1rao20 • updated 15 months ago by h.mon26k
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kmer distribution tiny peak at low coverage
assembly kmer distribution written 15 months ago by deepti1rao20 • updated 15 months ago by h.mon26k
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 17 months ago by deepti1rao20 • updated 16 months ago by Biostar ♦♦ 20
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fastqc file showing bad result for tile kmer
wgs tile kmer fail fastqc written 17 months ago by analytical0 • updated 17 months ago by YaGalbi1.4k
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hg19 features -> mm10
mm10 watson.strand tsswindows kmer written 19 months ago by andreiareis198730 • updated 19 months ago by Jean-Karim Heriche19k
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Recommendation on k-mer counting package for multiple libraries?
kmer written 20 months ago by johnnytam100100 • updated 20 months ago by 5heikki8.4k
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K-mer counter tool should write k-mers occurring only once to the output file?
kmer counter kmer written 22 months ago by saranpons360 • updated 22 months ago by Istvan Albert ♦♦ 80k
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TPM VS FPKM VS TMM and K-mer specific expression quantification
kmer rna-seq written 2.1 years ago by user230613280 • updated 23 months ago by Rob3.3k
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5 follow
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Does Jellyfish support zipped fastq sequences?
genome assembly kmer written 23 months ago by comma19930 • updated 23 months ago by genomax68k
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FastQC kmer content output
kmer rna-seq fastqc written 23 months ago by Maria0 • updated 23 months ago by Istvan Albert ♦♦ 80k
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718
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Representing a sequence as k-mer composition
sequence kmer dna written 2.1 years ago by mdurrant10 • updated 2.0 years ago by marsvetlana10
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