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Finding 16 mer not present in GRCh38
genome kmer written 19 months ago by Srw40 • updated 3 months ago by Alex Reynolds30k
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Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 5.9 years ago by Rayan Chikhi1.4k • updated 5 months ago by Zev.Kronenberg11k
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kmer counting for heterozygosity estimation
heterozygosity kmer jellyfish genome assembly written 6 months ago by el9700410 • updated 6 months ago by Dattatray Mongad350
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python function to kmer with windown size
fasta python kmer biopython written 6 months ago by flogin250 • updated 6 months ago by genomax87k
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best kmer for genome size estimation
genome kmer written 2.7 years ago by popayekid5570 • updated 7 months ago by harish290
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jellyfish kmer counting discrepancy
genome count kmer rna-seq jellyfish written 10 months ago by 7ehuang0 • updated 10 months ago by Istvan Albert ♦♦ 84k
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 4.7 years ago by arif.at.iut0 • updated 11 months ago by Biostar ♦♦ 20
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 14 months ago by gustavo.teixeira0 • updated 14 months ago by ATpoint36k
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Extracting related sequences from a FASTA file
sequence comparizon data mining kmer written 20 months ago by DataFanatic240 • updated 18 months ago by Biostar ♦♦ 20
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k mer analysis
k-mer assembly analysis kmer written 19 months ago by Mostafa20
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Abyss (Optimizing the parameter k)
assembly kmer abyss written 21 months ago by Mbillah110 • updated 20 months ago by Biostar ♦♦ 20
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Bulk primer design
fasta bulk primers kmer written 20 months ago by DataFanatic240 • updated 20 months ago by Pierre Lindenbaum129k
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error while creating kover dataset from fastq
kmer kover written 22 months ago by ekaterina.avershina0 • updated 21 months ago by Alexandre Drouin60
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Increase the kmer size in IDBA_UD?
illumina ngs idba_ud idba kmer written 2.3 years ago by mail2steff60 • updated 2.3 years ago by Sej Modha4.7k
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Judging best assembly
assembly cut off kmer coverage velvet written 2.3 years ago by deepti1rao30 • updated 2.3 years ago by Rohit1.4k
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Estimating genome size from k-mer histograms...
kmer next-gen genome size written 6.1 years ago by ab.tsubaki50 • updated 2.3 years ago by h.mon30k
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kmer distribution curve shifts to right of poisson distribution
kmer poisson distribution written 2.4 years ago by deepti1rao30 • updated 2.4 years ago by h.mon30k
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kmer distribution tiny peak at low coverage
assembly kmer distribution written 2.4 years ago by deepti1rao30 • updated 2.4 years ago by h.mon30k
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 2.6 years ago by deepti1rao30 • updated 2.4 years ago by Biostar ♦♦ 20
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fastqc file showing bad result for tile kmer
wgs tile kmer fail fastqc written 2.6 years ago by analytical0 • updated 2.6 years ago by YaGalbi1.5k
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hg19 features -> mm10
mm10 watson.strand tsswindows kmer written 2.7 years ago by andreiareis198730 • updated 2.7 years ago by Jean-Karim Heriche23k
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