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20
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Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 5.5 years ago by Rayan Chikhi1.4k • updated 5 weeks ago by Zev.Kronenberg11k
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128
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kmer counting for heterozygosity estimation
heterozygosity kmer jellyfish genome assembly written 12 weeks ago by el9700410 • updated 12 weeks ago by Dattatray Mongad350
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python function to kmer with windown size
fasta python kmer biopython written 12 weeks ago by flogin190 • updated 12 weeks ago by genomax80k
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5 follow
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best kmer for genome size estimation
genome kmer written 2.3 years ago by popayekid5570 • updated 3 months ago by harish270
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2
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421
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jellyfish kmer counting discrepancy
genome count kmer rna-seq jellyfish written 6 months ago by 7ehuang0 • updated 6 months ago by Istvan Albert ♦♦ 83k
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 4.4 years ago by arif.at.iut0 • updated 7 months ago by Biostar ♦♦ 20
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346
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449
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 10 months ago by gustavo.teixeira0 • updated 10 months ago by ATpoint32k
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Extracting related sequences from a FASTA file
sequence comparizon data mining kmer written 16 months ago by DataFanatic150 • updated 14 months ago by Biostar ♦♦ 20
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6 follow
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Finding 16 mer not present in GRCh38
genome kmer written 15 months ago by Srw40 • updated 14 months ago by Kevin Blighe56k
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586
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k mer analysis
k-mer assembly analysis kmer written 15 months ago by Mostafa20
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514
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Abyss (Optimizing the parameter k)
assembly kmer abyss written 17 months ago by Mbillah110 • updated 16 months ago by Biostar ♦♦ 20
3
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3
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Bulk primer design
fasta bulk primers kmer written 16 months ago by DataFanatic150 • updated 16 months ago by Pierre Lindenbaum127k
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0
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error while creating kover dataset from fastq
kmer kover written 18 months ago by ekaterina.avershina0 • updated 17 months ago by Alexandre Drouin60
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3
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Increase the kmer size in IDBA_UD?
illumina ngs idba_ud idba kmer written 23 months ago by mail2steff50 • updated 23 months ago by Sej Modha4.6k
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7 follow
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Judging best assembly
assembly cut off kmer coverage velvet written 2.0 years ago by deepti1rao30 • updated 24 months ago by Rohit1.4k
2
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1
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Estimating genome size from k-mer histograms...
kmer next-gen genome size written 5.8 years ago by ab.tsubaki50 • updated 2.0 years ago by h.mon29k
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563
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kmer distribution curve shifts to right of poisson distribution
kmer poisson distribution written 2.1 years ago by deepti1rao30 • updated 2.1 years ago by h.mon29k
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kmer distribution tiny peak at low coverage
assembly kmer distribution written 2.1 years ago by deepti1rao30 • updated 2.1 years ago by h.mon29k
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 2.2 years ago by deepti1rao30 • updated 2.1 years ago by Biostar ♦♦ 20
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754
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fastqc file showing bad result for tile kmer
wgs tile kmer fail fastqc written 2.3 years ago by analytical0 • updated 2.3 years ago by YaGalbi1.5k
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554
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1
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hg19 features -> mm10
mm10 watson.strand tsswindows kmer written 2.4 years ago by andreiareis198730 • updated 2.4 years ago by Jean-Karim Heriche22k
2
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617
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Recommendation on k-mer counting package for multiple libraries?
kmer written 2.4 years ago by johnnytam100100 • updated 2.4 years ago by 5heikki8.7k
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