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How can you determine ploidy of a genome?
genomescope ploidy kmer jellyfish written 10 weeks ago by kristina.mahan100 • updated 10 weeks ago by h.mon31k
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8 follow
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Finding 16 mer not present in GRCh38
genome kmer written 22 months ago by Srw40 • updated 6 months ago by Alex Reynolds31k
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Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 6.1 years ago by Rayan Chikhi1.4k • updated 8 months ago by Zev.Kronenberg11k
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kmer counting for heterozygosity estimation
heterozygosity kmer jellyfish genome assembly written 9 months ago by el9700410 • updated 9 months ago by Dattatray Mongad350
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python function to kmer with windown size
fasta python kmer biopython written 9 months ago by flogin250 • updated 9 months ago by genomax91k
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5 follow
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best kmer for genome size estimation
genome kmer written 2.9 years ago by popayekid5570 • updated 10 months ago by harish320
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jellyfish kmer counting discrepancy
genome count kmer rna-seq jellyfish written 13 months ago by 7ehuang0 • updated 13 months ago by Istvan Albert ♦♦ 85k
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 4.9 years ago by arif.at.iut0 • updated 14 months ago by Biostar ♦♦ 20
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Different metrics with same kmer values in SPAdes assembly
assembly spades kmer written 17 months ago by gustavo.teixeira0 • updated 17 months ago by ATpoint40k
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Extracting related sequences from a FASTA file
sequence comparizon data mining kmer written 23 months ago by DataFanatic260 • updated 21 months ago by Biostar ♦♦ 20
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k mer analysis
k-mer assembly analysis kmer written 22 months ago by Mostafa20
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Abyss (Optimizing the parameter k)
assembly kmer abyss written 2.0 years ago by Mbillah110 • updated 22 months ago by Biostar ♦♦ 20
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7 follow
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Bulk primer design
fasta bulk primers kmer written 23 months ago by DataFanatic260 • updated 23 months ago by Pierre Lindenbaum131k
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error while creating kover dataset from fastq
kmer kover written 2.1 years ago by ekaterina.avershina0 • updated 2.0 years ago by Alexandre Drouin90
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Increase the kmer size in IDBA_UD?
illumina ngs idba_ud idba kmer written 2.5 years ago by mail2steff60 • updated 2.5 years ago by Sej Modha4.7k
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Judging best assembly
assembly cut off kmer coverage velvet written 2.6 years ago by deepti1rao30 • updated 2.5 years ago by Rohit1.4k
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Estimating genome size from k-mer histograms...
kmer next-gen genome size written 6.3 years ago by ab.tsubaki50 • updated 2.6 years ago by h.mon31k
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kmer distribution curve shifts to right of poisson distribution
kmer poisson distribution written 2.6 years ago by deepti1rao30 • updated 2.6 years ago by h.mon31k
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kmer distribution tiny peak at low coverage
assembly kmer distribution written 2.6 years ago by deepti1rao30 • updated 2.6 years ago by h.mon31k
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