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4
votes
4
answers
2.9k
views
5 follow
4
answers
best kmer for genome size estimation
genome kmer written 2.8 years ago by popayekid5570 • updated 9 months ago by harish300
15
votes
4
answers
903
views
8 follow
4
answers
Finding 16 mer not present in GRCh38
genome kmer written 21 months ago by Srw40 • updated 5 months ago by Alex Reynolds30k
20
votes
3
answers
2.5k
views
3
answers
Blog: Fast kmer reverse complement code using bit tricks
kmer reverse-complement gatb code blog written 6.0 years ago by Rayan Chikhi1.4k • updated 7 months ago by Zev.Kronenberg11k
7
votes
3
answers
2.8k
views
3
answers
Count and location of strings in fastq file reads
kmer suffix tree rna-seq written 4.2 years ago by rubic200 • updated 3.8 years ago by Lars Juhl Jensen11k
2
votes
3
answers
2.0k
views
3
answers
4
votes
3
answers
686
views
7 follow
3
answers
Bulk primer design
fasta bulk primers kmer written 22 months ago by DataFanatic260 • updated 22 months ago by Pierre Lindenbaum130k
4
votes
2
answers
1.3k
views
2
answers
In Jellyfish, what does the "-C" switch do?
assembly kmer jellyfish written 4.9 years ago by Tom20 • updated 3.8 years ago by Biostar ♦♦ 20
9
votes
2
answers
2.9k
views
2
answers
kmer alignment with mismatch
kmer alignmnt mismatch written 4.7 years ago by Vince150 • updated 4.7 years ago by dariober11k
0
votes
2
answers
1.9k
views
2
answers
Kmergenie k-mer estimate and multiple k-mers
assembly kmergenie kmer written 4.0 years ago by ed37160 • updated 3.6 years ago by Rayan Chikhi1.4k
5
votes
2
answers
1.6k
views
6 follow
2
answers
compiling kmergenie 1.7038. Is it possible?
compilation kmergenie kmer written 3.7 years ago by torsten10 • updated 3.6 years ago by Rayan Chikhi1.4k
14
votes
2
answers
1.3k
views
2
answers
5
votes
2
answers
1.0k
views
2
answers
Can anybody explain what this statement says?
kmer counter kmer written 3.5 years ago by saranpons370 • updated 3.5 years ago by a.zielezinski9.2k
8
votes
2
answers
4.1k
views
2
answers
TPM VS FPKM VS TMM and K-mer specific expression quantification
kmer rna-seq written 3.3 years ago by user230613280 • updated 3.2 years ago by Rob4.2k
2
votes
2
answers
1.2k
views
7 follow
2
answers
Judging best assembly
assembly cut off kmer coverage velvet written 2.5 years ago by deepti1rao30 • updated 2.5 years ago by Rohit1.4k
4
votes
2
answers
610
views
2
answers
jellyfish kmer counting discrepancy
genome count kmer rna-seq jellyfish written 12 months ago by 7ehuang0 • updated 12 months ago by Istvan Albert ♦♦ 85k
2
votes
1
answer
3.2k
views
1
answer
Estimating genome size from k-mer histograms...
kmer next-gen genome size written 6.2 years ago by ab.tsubaki50 • updated 2.5 years ago by h.mon31k
3
votes
1
answer
1.7k
views
1
answer
Any tools to count kmers in tumor/normal (contrast) pairs of samples?
next-gen kmer written 6.0 years ago by 141341254653464453.5k • updated 6.0 years ago by Sean Davis26k
1
vote
1
answer
1.5k
views
1
answer
4
votes
1
answer
4.1k
views
1
answer
Which peak is homozygous and heterozygous in Kmer plot for Genome estimation
genome assembly kmer written 5.6 years ago by Prakki Rama2.4k • updated 5.6 years ago by thackl2.8k
1
vote
1
answer
1.2k
views
1
answer
4
votes
1
answer
968
views
1
answer
Assessing diversity of random oligonucleotides
oligonucleotides sequence kmer random written 5.2 years ago by dariober11k • updated 5.1 years ago by Vincent Laufer1.1k
1
vote
1
answer
1.6k
views
1
answer
2
votes
1
answer
2.4k
views
1
answer
Finding most frequent k-mers in Fastq file
k-mer bioinformatics kmer sequencing written 4.7 years ago by murat0 • updated 4.7 years ago by Matt Shirley9.4k
0
votes
1
answer
1.6k
views
1
answer
Kmergenie fails to fit models with --diploid settings
kmer paired-end kmergenie miseq written 4.6 years ago by pepijn.kooij0 • updated 3.6 years ago by Rayan Chikhi1.4k
4
votes
1
answer
1.5k
views
1
answer
News: Kover will provide support via Biostars
news kmer machine learning kover written 4.3 years ago by Alexandre Drouin90 • updated 3.7 years ago by hfan2240
2
votes
1
answer
3.1k
views
1
answer
How to decide Kmer size for RNA seq analysis using Trinity
trinity kmer rna-seq written 4.3 years ago by raya.girish20 • updated 4.3 years ago by iraun3.8k
0
votes
1
answer
1.4k
views
1
answer
Variant detection - reference-free - kmer - RUFUS
variant detection kmer rufus written 4.3 years ago by Jan Hapala0 • updated 4.3 years ago by ivivek_ngs5.0k
4
votes
1
answer
1.6k
views
1
answer
0
votes
1
answer
6.5k
views
1
answer
3
votes
1
answer
5.5k
views
1
answer
Confusion about the kmer coverage
spades kmer written 3.9 years ago by Picasa560 • updated 3.9 years ago by mastal5112.0k
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