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<prev • 100 results • page 1 of 4 • next >
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Use LD statistics to find proxy SNP
vcf snp ld written 2.2 years ago by sabir.saluja • 0 • updated 1 day ago by Biostar ♦♦ 20
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1
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90
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1
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Create linkage disequilibrium file
locusexplorer snp linkage disequilibrium plink ld written 6 days ago by Dhana • 60 • updated 5 days ago by zx8754 ♦ 4.3k
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3
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5 follow
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Obtain the LD matrix from a list of SNP
snp ld written 10 months ago by janhuang.cn • 80 • updated 6 days ago by zx8754 ♦ 4.3k
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160
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Linkage Disequilibrium calculation
snps ld written 12 weeks ago by alessandrotestori7 • 290
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6 follow
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Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 4.6 years ago by Javier2013 • 110 • updated 3 months ago by hfang4 • 0
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1
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641
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1
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Negative and positive linkage disequilibrium
linkage gwas plink ld written 19 months ago by fatima • 10 • updated 3 months ago by seta • 970
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283
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1
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Plink: compute LD between all SNP pairs
snp linkage disequilibrium plink ld written 3 months ago by rmf • 270 • updated 3 months ago by chrchang523 ♦ 3.4k
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220
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simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 4 months ago by J.F.Jiang • 690
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226
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LD between CNVs and exterior SNPs
snp cnv ld written 4 months ago by Ana • 100
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288
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0
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How to convert recombination rate data from LDHAT into a recombination map for imputation in IMPUTE2
recombination ld genetic map written 5 months ago by Shab86 • 220
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1
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359
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1
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Haplotype LD block without genotypes
gwas haplotype ld written 6 months ago by alessandrotestori7 • 290 • updated 5 months ago by sathish.periyasamy • 20
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1
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563
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1
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linkage disequilibrium analysis
different chromosomes snps ld written 6 months ago by tarek.mohamed • 130 • updated 6 months ago by Kevin Blighe ♦ 19k
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1
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How to plot LD decay?
ld r2 written 2.0 years ago by akang • 90 • updated 6 months ago by gezgrm • 0
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395
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regioneR, but for Linkage Disequilibrium, not just overlap?
ld snp written 7 months ago by Philipp Bayer ♦ 5.4k
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257
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veqtl-mapper in a replication study --perm option
permutations veqtl-mapper ld replication written 7 months ago by DataFanatic • 80
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2
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794
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2
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ld matrix in plink
matrix ld written 9 months ago by janhuang.cn • 80 • updated 7 months ago by DataFanatic • 80
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1
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519
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1
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plink calculating LD using R2 command
plink ld r2 written 7 months ago by janhuang.cn • 80 • updated 7 months ago by pfs • 230
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396
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1
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GWAS: How to estimate probability of SNP association being result of one specific regulatory element, rather than others in LD
calculus gwas snp ld algorithms written 8 months ago by michael.nagle • 90 • updated 8 months ago by Sam • 2.1k
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521
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1
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Haploview cannot connect to the internet?
haploview ld written 10 months ago by Sheila • 220 • updated 10 months ago by Pierre Lindenbaum ♦ 107k
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515
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Window and step size for LD-independent SNPs
plink ld snp r2 written 11 months ago by willgilks • 240
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378
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Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
ld snps 1000genome mutations written 11 months ago by bioinforesearchquestions • 120
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476
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Using Plink to calculate LD between loci on different chromosomes
ld plink snp written 12 months ago by jr.azaria • 0
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1
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Is it more correct to use r2 or D' for selecting SNPs in LD?
linkage disequilibrium ld written 14 months ago by Milos Pjanic • 20 • updated 12 months ago by Vincent Laufer • 890
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2
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630
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2
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LD calculation using LD plugin for VEP
linkage disequilibrium vep ld written 13 months ago by eXpander • 90 • updated 13 months ago by Ben_Ensembl • 600
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Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 16 months ago by Lou • 0 • updated 14 months ago by Biostar ♦♦ 20
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Problems Using R2 (Ld Decay) Command In Plink!
ld plink snp plot written 4.6 years ago by Javier2013 • 110 • updated 14 months ago by Biostar ♦♦ 20
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422
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 15 months ago by Veera • 70 • updated 15 months ago by Petr Ponomarenko • 2.5k
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1
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580
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1
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Adding gene diagram to output from snp.plotter
gene diagram ld heatmap written 15 months ago by Vincent Laufer • 890 • updated 15 months ago by cannin • 230
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594
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Locus Zoom issues no error but prints file with no LD information displayed
linkage disequilibrium ld locuszoom written 15 months ago by Vincent Laufer • 890
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Ld Mapping Using A ~30G File With Perl Script
perl ld written 5.6 years ago by J.F.Jiang • 690 • updated 17 months ago by Biostar ♦♦ 20
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