Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: ld • reset
or   Classic search
<prev • 112 results • page 1 of 4 • next >
0
votes
0
answers
22
views
0
answers
Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 5 hours ago by Werewolf • 10
1
vote
0
answers
48
views
0
answers
Prune SNPs in LD with a list of SNPs
snp plink ld written 1 day ago by aritra90 • 20
0
votes
1
answer
96
views
1
answer
VCFtools version for LD calculations specifying bin size
vcftools ld written 29 days ago by Stephanie • 0 • updated 25 days ago by Kevin Blighe ♦ 30k
0
votes
0
answers
90
views
0
answers
LD pruning before or after phasing for calculating site frequency spectrum?
snp ld written 28 days ago by Mr Locuace • 80
0
votes
1
answer
1.4k
views
1
answer
Find all SNPs in linkage disequilibrium
ensembl snp ld written 2.6 years ago by johanne.hh • 0 • updated 4 weeks ago by RamRS ♦ 18k
0
votes
1
answer
145
views
1
answer
SNPs in high LD after LD pruning
ld snprelate written 5 weeks ago by Ana • 100 • updated 5 weeks ago by Kevin Blighe ♦ 30k
2
votes
1
answer
873
views
1
answer
Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 21 months ago by Lou • 10 • updated 5 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
144
views
0
answers
Error in LDMAP program: Calculating LD units between each SNP on a chromosome
ld-units ldmap C ld written 6 weeks ago by helpme • 0
5
votes
1
answer
136
views
5 follow
1
answer
Multiple Haplotype Phasing Solutions in Plink
plink ld written 7 weeks ago by Shicheng Guo • 6.9k • updated 7 weeks ago by chrchang523 ♦ 3.9k
0
votes
0
answers
224
views
0
answers
How to calculate SNP LD values from haplotype data
haplotype linkage disequilibrium ld snp written 3 months ago by williamtenoriotenorio • 0
0
votes
0
answers
152
views
0
answers
r-squared calculation && GAP package error
R snp linkage disequilibrium plink ld written 3 months ago by Mk • 0
0
votes
0
answers
139
views
0
answers
Generating random sets of LD-independent SNPs from GWAS and calculating an empirical p-value
snp permutation testing empirical p-value r2 ld written 4 months ago by AB • 0
0
votes
1
answer
175
views
1
answer
How to match alleles for a pair of SNPs using PLINK?
allele matching plink ld written 4 months ago by Tao • 240
1
vote
1
answer
170
views
1
answer
How to read a ".ld.bin" file produced by PLINK
R plink ld written 4 months ago by andreagarcia871 • 60
0
votes
1
answer
2.7k
views
1
answer
Use LD statistics to find proxy SNP
vcf snp ld written 2.6 years ago by sabir.saluja • 0 • updated 4 months ago by Biostar ♦♦ 20
4
votes
1
answer
418
views
1
answer
Create linkage disequilibrium file
locusexplorer snp linkage disequilibrium plink ld written 5 months ago by Dhana • 60 • updated 5 months ago by zx8754 ♦ 5.3k
2
votes
3
answers
2.3k
views
5 follow
3
answers
Obtain the LD matrix from a list of SNP
snp ld written 15 months ago by janhuang.cn • 90 • updated 5 months ago by zx8754 ♦ 5.3k
0
votes
0
answers
366
views
0
answers
Linkage Disequilibrium calculation
snps ld written 7 months ago by alessandrotestori7 • 300
4
votes
2
answers
11k
views
6 follow
2
answers
Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 5.0 years ago by Javier2013 • 110 • updated 8 months ago by hfang4 • 0
0
votes
1
answer
882
views
1
answer
Negative and positive linkage disequilibrium
linkage gwas plink ld written 2.0 years ago by fatima • 10 • updated 8 months ago by seta • 1.0k
0
votes
1
answer
756
views
1
answer
Plink: compute LD between all SNP pairs
snp linkage disequilibrium plink ld written 8 months ago by rmf • 370 • updated 8 months ago by chrchang523 ♦ 3.9k
0
votes
0
answers
367
views
0
answers
simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 9 months ago by J.F.Jiang • 710
1
vote
0
answers
317
views
0
answers
LD between CNVs and exterior SNPs
snp cnv ld written 9 months ago by Ana • 100
0
votes
0
answers
493
views
0
answers
How to convert recombination rate data from LDHAT into a recombination map for imputation in IMPUTE2
recombination ld genetic map written 10 months ago by Shab86 • 220
2
votes
1
answer
542
views
1
answer
Haplotype LD block without genotypes
gwas haplotype ld written 11 months ago by alessandrotestori7 • 300 • updated 10 months ago by sathish.periyasamy • 20
2
votes
1
answer
1.0k
views
1
answer
linkage disequilibrium analysis
different chromosomes snps ld written 11 months ago by tarek.mohamed • 180 • updated 11 months ago by Kevin Blighe ♦ 30k
0
votes
1
answer
2.1k
views
1
answer
How to plot LD decay?
ld r2 written 2.4 years ago by akang • 90 • updated 11 months ago by gezgrm • 0
0
votes
0
answers
526
views
0
answers
regioneR, but for Linkage Disequilibrium, not just overlap?
ld snp written 12 months ago by Philipp Bayer ♦ 5.7k
0
votes
0
answers
342
views
0
answers
veqtl-mapper in a replication study --perm option
permutations veqtl-mapper ld replication written 12 months ago by DataFanatic • 110
2
votes
2
answers
1.3k
views
2
answers
ld matrix in plink
matrix ld written 14 months ago by janhuang.cn • 90 • updated 12 months ago by DataFanatic • 110
<prev • 112 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • Pakistan, 1 minute ago
  • European Union, 3 minutes ago
  • United Kingdom, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1150 users visited in the last hour