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What is a suitable LD threshold for LD pruning of snp data?
snp eqtl ld written 3 months ago by Colari1950 • updated 3 months ago by reza.jabal440
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Pruning GWAS summary statistics for LD
plink ldpred pruning ld cojo written 4 months ago by ika40 • updated 4 months ago by Sam3.2k
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Controlling For Linkage Disequilibrium
genome linkage snp ld written 6.8 years ago by anthillparks30 • updated 4 months ago by Biostar ♦♦ 20
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Plink 1.9 haplotype blocks with not phased data
blocks plink ld phased written 5 months ago by Peixe600 • updated 5 months ago by chrchang5237.3k
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How to calculate the LD from a list of SNPs using plink
snp ld plink written 7 months ago by 15876201860 • updated 7 months ago by JFF0
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ld-pruning to a specific number of SNPs
linkage ld-pruning plink ld written 8 months ago by javadjamshidi40 • updated 8 months ago by chrchang5237.3k
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How to read a ".ld.bin" file produced by PLINK
R plink ld written 2.4 years ago by andreagarcia87160 • updated 8 months ago by lenore.pipes20
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Linkage disequilibrium with one sample
ld plink19 written 9 months ago by felipead6670 • updated 9 months ago by chrchang5237.3k
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Consistency of LD in the two populations
consistency ld written 10 months ago by adele60 • updated 10 months ago by Yean120
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Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
--ld plink ld written 11 months ago by Tao420 • updated 11 months ago by chrchang5237.3k
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 16 months ago by spela.salamon0 • updated 16 months ago by Corentin450
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merge files with PLINK
snp plink ld written 16 months ago by Myosotis197910
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 16 months ago by felipead6670 • updated 16 months ago by RamRS30k
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Estimating LD score in PLINK
ldscore plink ld written 17 months ago by GabrielMontenegro560 • updated 17 months ago by RamRS30k
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Find region that full captures association signal
gwas ld pvalue written 17 months ago by User 7754240 • updated 17 months ago by christopher medway440
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