Showing: ldreset
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 4 months ago by spela.salamon0 • updated 4 months ago by Corentin430
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Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 5 months ago by Pramod0 • updated 4 months ago by Asaf6.5k
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merge files with PLINK
snp plink ld written 5 months ago by Myosotis197910
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 5 months ago by felipead6640 • updated 5 months ago by RamRS24k
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Estimating LD score in PLINK
ldscore plink ld written 6 months ago by GabrielMontenegro540 • updated 6 months ago by RamRS24k
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Find region that full captures association signal
gwas ld pvalue written 6 months ago by User 7754230 • updated 6 months ago by christopher medway440
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How to plot LD decay?
ld r2 written 3.5 years ago by akang90 • updated 6 months ago by Kevin Blighe51k
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PLINK LD matrix determine what variants were removed
ld plink snp written 6 months ago by andhamel0 • updated 6 months ago by chrchang5235.8k
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minimum snp number from set in LD
snps ld minimum snp number written 7 months ago by RNAseqer 110 • updated 7 months ago by MatthewP290
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Proxy SNPs from 1000 genome phase3
snp plink ld written 7 months ago by bayoteju10
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 4.1 years ago by jfertaj90 • updated 8 months ago by zx87548.4k
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PLINK --r2 square: snp ids are not written
snp plink ld r2 written 9 months ago by Hamid10 • updated 9 months ago by chrchang5235.8k
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Get all SNPs that are in high linkage disequilibrium (based on D') for a set of SNPs
snp plink ld written 10 months ago by Mr Locuace90 • updated 10 months ago by chrchang5235.8k
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 11 months ago by alesierra280 • updated 11 months ago by Biostar ♦♦ 20
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LD pruning before imputation?
snp impute plink ld written 11 months ago by whtopjazz0 • updated 11 months ago by zx87548.4k
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find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 12 months ago by anamaria80 • updated 12 months ago by toralmanvar820
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 23 months ago by J.F.Jiang760 • updated 12 months ago by zx87548.4k
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 2.7 years ago by Veera 90 • updated 12 months ago by Shicheng Guo7.8k
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