Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: ld • reset
or   Classic search
<prev • 130 results • page 1 of 5 • next >
0
votes
0
answers
37
views
0
answers
Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 3 days ago by Pramod • 0
0
votes
0
answers
60
views
0
answers
merge files with PLINK
snp plink ld written 11 days ago by Myosotis1979 • 10
0
votes
0
answers
81
views
0
answers
Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 14 days ago by felipead66 • 30 • updated 14 days ago by RamRS ♦ 22k
0
votes
0
answers
104
views
0
answers
Estimating LD score in PLINK
ldscore plink ld written 4 weeks ago by GabrielMontenegro • 520 • updated 4 weeks ago by RamRS ♦ 22k
0
votes
1
answer
134
views
1
answer
Find region that full captures association signal
gwas ld pvalue written 5 weeks ago by User 7754 • 230 • updated 4 weeks ago by christopher medway • 440
0
votes
1
answer
2.8k
views
1
answer
How to plot LD decay?
ld r2 written 3.1 years ago by akang • 90 • updated 5 weeks ago by Kevin Blighe ♦ 44k
1
vote
1
answer
122
views
1
answer
PLINK LD matrix determine what variants were removed
ld plink snp written 7 weeks ago by andhamel • 0 • updated 7 weeks ago by chrchang523 ♦ 5.3k
0
votes
1
answer
121
views
1
answer
minimum snp number from set in LD
snps ld minimum snp number written 10 weeks ago by RNAseqer • 110 • updated 10 weeks ago by MatthewP • 120
1
vote
1
answer
423
views
1
answer
Proxy SNPs from 1000 genome phase3
snp plink ld written 12 weeks ago by bayoteju • 10
2
votes
1
answer
1.2k
views
1
answer
Add rsid to LD output from vcftools
vcf snp ld vcftools written 3.7 years ago by jfertaj • 90 • updated 3 months ago by zx8754 ♦ 7.5k
1
vote
0
answers
281
views
0
answers
Filtering SNPS by minimum LD value in bcftools?
vcf bcftools vcftools ld r2 written 3 months ago by RNAseqer • 110
1
vote
1
answer
187
views
1
answer
PLINK --r2 square: snp ids are not written
snp plink ld r2 written 4 months ago by Hamid • 10 • updated 4 months ago by chrchang523 ♦ 5.3k
7
votes
1
answer
387
views
1
answer
Get all SNPs that are in high linkage disequilibrium (based on D') for a set of SNPs
snp plink ld written 5 months ago by Mr Locuace • 90 • updated 5 months ago by chrchang523 ♦ 5.3k
4
votes
0
answers
250
views
0
answers
Genome-wide LD PLINK | empty file for chromosome 24
genome ld plink snp written 5 months ago by Abdel • 20
0
votes
0
answers
250
views
0
answers
Input file LD in Haploview
ld next-gen haploview snp tassel written 6 months ago by alesierra28 • 0
0
votes
0
answers
269
views
0
answers
How to define the LD interval where a SNP locates?
genetics plink ld written 6 months ago by Tao • 300
0
votes
0
answers
311
views
0
answers
Haplotype block in PLINK using r2 values
haplotypes snp plink ld written 6 months ago by GabrielMontenegro • 520
0
votes
0
answers
444
views
0
answers
Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 6 months ago by alesierra28 • 0 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
334
views
0
answers
LD pruning before imputation?
snp impute plink ld written 6 months ago by whtopjazz • 0 • updated 6 months ago by zx8754 ♦ 7.5k
0
votes
1
answer
283
views
1
answer
find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 7 months ago by anamaria • 40 • updated 7 months ago by toralmanvar • 770
3
votes
1
answer
736
views
1
answer
Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 18 months ago by J.F.Jiang • 750 • updated 7 months ago by zx8754 ♦ 7.5k
4
votes
2
answers
958
views
5 follow
2
answers
Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 2.3 years ago by Veera • 90 • updated 7 months ago by Shicheng Guo • 7.5k
15
votes
0
answers
916
views
10 follow
0
answers
Tutorial: Fast LD computation from VCF files using tomahawk
bcftools ld vcf tutorial snp vcftools written 7 months ago by rmf • 670
1
vote
1
answer
296
views
1
answer
HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calculator
ensembl snp ld written 8 months ago by Scott • 80 • updated 8 months ago by Emily_Ensembl ♦ 18k
7
votes
1
answer
2.6k
views
10 follow
1
answer
Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 8 months ago by JourneyToAbyss • 70 • updated 8 months ago by Kevin Blighe ♦ 44k
1
vote
0
answers
413
views
0
answers
Prune SNPs in LD with a list of SNPs
snp plink ld written 8 months ago by aritra90 • 40
3
votes
1
answer
919
views
1
answer
VCFtools version for LD calculations specifying bin size
vcftools ld written 9 months ago by Stephanie • 30 • updated 9 months ago by Kevin Blighe ♦ 44k
0
votes
0
answers
339
views
0
answers
LD pruning before or after phasing for calculating site frequency spectrum?
snp ld written 9 months ago by Mr Locuace • 90
0
votes
1
answer
1.7k
views
1
answer
Find all SNPs in linkage disequilibrium
ensembl snp ld written 3.3 years ago by johanne.hh • 0 • updated 9 months ago by RamRS ♦ 22k
0
votes
1
answer
555
views
1
answer
SNPs in high LD after LD pruning
ld snprelate written 9 months ago by Ana • 170 • updated 9 months ago by Kevin Blighe ♦ 44k
<prev • 130 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • United Kingdom, just now
  • Limoges, CBRS, France, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1837 users visited in the last hour