Showing: ldreset
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merge files with PLINK
snp plink ld written 11 days ago by Myosotis197910
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 14 days ago by felipead6630 • updated 14 days ago by RamRS22k
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Estimating LD score in PLINK
ldscore plink ld written 4 weeks ago by GabrielMontenegro520 • updated 4 weeks ago by RamRS22k
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Find region that full captures association signal
gwas ld pvalue written 5 weeks ago by User 7754230 • updated 4 weeks ago by christopher medway440
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How to plot LD decay?
ld r2 written 3.1 years ago by akang90 • updated 5 weeks ago by Kevin Blighe44k
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122
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PLINK LD matrix determine what variants were removed
ld plink snp written 7 weeks ago by andhamel0 • updated 7 weeks ago by chrchang5235.3k
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121
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minimum snp number from set in LD
snps ld minimum snp number written 10 weeks ago by RNAseqer 110 • updated 10 weeks ago by MatthewP120
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423
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Proxy SNPs from 1000 genome phase3
snp plink ld written 12 weeks ago by bayoteju10
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 3.7 years ago by jfertaj90 • updated 3 months ago by zx87547.5k
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281
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PLINK --r2 square: snp ids are not written
snp plink ld r2 written 4 months ago by Hamid10 • updated 4 months ago by chrchang5235.3k
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311
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444
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 6 months ago by alesierra280 • updated 6 months ago by Biostar ♦♦ 20
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LD pruning before imputation?
snp impute plink ld written 6 months ago by whtopjazz0 • updated 6 months ago by zx87547.5k
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find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 7 months ago by anamaria40 • updated 7 months ago by toralmanvar770
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 18 months ago by J.F.Jiang750 • updated 7 months ago by zx87547.5k
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5 follow
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 2.3 years ago by Veera 90 • updated 7 months ago by Shicheng Guo7.5k
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 8 months ago by JourneyToAbyss70 • updated 8 months ago by Kevin Blighe44k
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Prune SNPs in LD with a list of SNPs
snp plink ld written 8 months ago by aritra9040
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VCFtools version for LD calculations specifying bin size
vcftools ld written 9 months ago by Stephanie30 • updated 9 months ago by Kevin Blighe44k
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Find all SNPs in linkage disequilibrium
ensembl snp ld written 3.3 years ago by johanne.hh0 • updated 9 months ago by RamRS22k
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555
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SNPs in high LD after LD pruning
ld snprelate written 9 months ago by Ana170 • updated 9 months ago by Kevin Blighe44k
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