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<prev • 137 results • page 1 of 5 • next >
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Post GWAS Interpretation - What Next?
gwas haplotype ld written 3 days ago by petebrotherwood • 10
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134
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Interpret contribution of regions in Partitioning heritability enrichment result
ldsc enrichment snp ld written 3 months ago by niu.shengyong • 50
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98
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What does the exclamation mark (!) means in Haploview output?
haploview ld haploblocks written 4 months ago by rimgubaev • 140
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105
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Is it possible to assign haplotypes to individuals using haploview?
vcf haplotype blocks haploview ld plink written 4 months ago by rimgubaev • 140
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166
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Anyone have experience with crossing methylation markers (CpGs) with SNPs?
gwas ld snp cpg written 4 months ago by spela.salamon • 0
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1
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247
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1
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 4 months ago by spela.salamon • 0 • updated 4 months ago by Corentin • 430
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186
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 4 months ago by rimgubaev • 140
1
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1
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131
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1
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Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 5 months ago by Pramod • 0 • updated 4 months ago by Asaf ♦ 6.5k
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173
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merge files with PLINK
snp plink ld written 5 months ago by Myosotis1979 • 10
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254
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 5 months ago by felipead66 • 40 • updated 5 months ago by RamRS ♦ 24k
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320
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Estimating LD score in PLINK
ldscore plink ld written 6 months ago by GabrielMontenegro • 540 • updated 6 months ago by RamRS ♦ 24k
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1
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225
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1
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Find region that full captures association signal
gwas ld pvalue written 6 months ago by User 7754 • 230 • updated 6 months ago by christopher medway • 440
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1
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3.2k
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1
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How to plot LD decay?
ld r2 written 3.5 years ago by akang • 90 • updated 6 months ago by Kevin Blighe ♦ 51k
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1
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257
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1
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PLINK LD matrix determine what variants were removed
ld plink snp written 6 months ago by andhamel • 0 • updated 6 months ago by chrchang523 ♦ 5.8k
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1
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213
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1
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minimum snp number from set in LD
snps ld minimum snp number written 7 months ago by RNAseqer • 110 • updated 7 months ago by MatthewP • 290
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1
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531
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1
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Proxy SNPs from 1000 genome phase3
snp plink ld written 7 months ago by bayoteju • 10
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1
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1.3k
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1
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 4.1 years ago by jfertaj • 90 • updated 8 months ago by zx8754 ♦ 8.4k
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643
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Filtering SNPS by minimum LD value in bcftools?
vcf bcftools vcftools ld r2 written 8 months ago by RNAseqer • 110
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291
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1
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PLINK --r2 square: snp ids are not written
snp plink ld r2 written 9 months ago by Hamid • 10 • updated 9 months ago by chrchang523 ♦ 5.8k
7
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1
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623
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1
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Get all SNPs that are in high linkage disequilibrium (based on D') for a set of SNPs
snp plink ld written 10 months ago by Mr Locuace • 90 • updated 10 months ago by chrchang523 ♦ 5.8k
4
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369
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Genome-wide LD PLINK | empty file for chromosome 24
genome ld plink snp written 10 months ago by Abdel • 20
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357
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Input file LD in Haploview
ld next-gen haploview snp tassel written 11 months ago by alesierra28 • 0
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383
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How to define the LD interval where a SNP locates?
genetics plink ld written 11 months ago by Tao • 350
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513
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Haplotype block in PLINK using r2 values
haplotypes snp plink ld written 11 months ago by GabrielMontenegro • 540
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632
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 11 months ago by alesierra28 • 0 • updated 11 months ago by Biostar ♦♦ 20
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534
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LD pruning before imputation?
snp impute plink ld written 11 months ago by whtopjazz • 0 • updated 11 months ago by zx8754 ♦ 8.4k
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1
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386
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1
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find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 12 months ago by anamaria • 80 • updated 12 months ago by toralmanvar • 820
3
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1
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872
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1
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 23 months ago by J.F.Jiang • 760 • updated 12 months ago by zx8754 ♦ 8.4k
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2
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5 follow
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 2.7 years ago by Veera • 90 • updated 12 months ago by Shicheng Guo • 7.8k
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10 follow
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Tutorial: Fast LD computation from VCF files using tomahawk
bcftools ld vcf tutorial snp vcftools written 12 months ago by rmf • 750
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