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Pruning GWAS summary statistics for LD
plink ldpred pruning ld cojo written 17 days ago by ika30 • updated 17 days ago by Sam2.9k
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Controlling For Linkage Disequilibrium
genome linkage snp ld written 6.5 years ago by anthillparks30 • updated 27 days ago by Biostar ♦♦ 20
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Plink 1.9 haplotype blocks with not phased data
blocks plink ld phased written 7 weeks ago by Peixe600 • updated 7 weeks ago by chrchang5237.1k
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How to calculate the LD from a list of SNPs using plink
snp ld plink written 3 months ago by 15876201860 • updated 3 months ago by JFF0
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ld-pruning to a specific number of SNPs
linkage ld-pruning plink ld written 4 months ago by javadjamshidi40 • updated 4 months ago by chrchang5237.1k
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How to read a ".ld.bin" file produced by PLINK
R plink ld written 2.1 years ago by andreagarcia87160 • updated 4 months ago by lenore.pipes20
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Linkage disequilibrium with one sample
ld plink19 written 6 months ago by felipead6660 • updated 6 months ago by chrchang5237.1k
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Consistency of LD in the two populations
consistency ld written 6 months ago by adele60 • updated 6 months ago by Yean100
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Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
--ld plink ld written 7 months ago by Tao370 • updated 7 months ago by chrchang5237.1k
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 12 months ago by spela.salamon0 • updated 12 months ago by Corentin450
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Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 12 months ago by Pramod0 • updated 12 months ago by Asaf8.0k
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merge files with PLINK
snp plink ld written 12 months ago by Myosotis197910
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 13 months ago by felipead6660 • updated 13 months ago by RamRS27k
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Estimating LD score in PLINK
ldscore plink ld written 13 months ago by GabrielMontenegro560 • updated 13 months ago by RamRS27k
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Find region that full captures association signal
gwas ld pvalue written 13 months ago by User 7754240 • updated 13 months ago by christopher medway440
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How to plot LD decay?
ld r2 written 4.1 years ago by akang90 • updated 13 months ago by Kevin Blighe61k
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PLINK LD matrix determine what variants were removed
ld plink snp written 14 months ago by andhamel0 • updated 14 months ago by chrchang5237.1k
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minimum snp number from set in LD
snps ld minimum snp number written 15 months ago by RNAseqer 130 • updated 15 months ago by MatthewP660
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