Showing: ldreset
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PLINK --r2 square: snp ids are not written
snp plink ld r2 written 13 days ago by Hamid10 • updated 13 days ago by chrchang5234.7k
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 11 weeks ago by alesierra280 • updated 11 weeks ago by Biostar ♦♦ 20
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189
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LD pruning before imputation?
snp impute plink ld written 12 weeks ago by whtopjazz0 • updated 12 weeks ago by zx87546.6k
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180
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find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 3 months ago by anamaria0 • updated 3 months ago by toralmanvar750
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580
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 14 months ago by J.F.Jiang740 • updated 3 months ago by zx87546.6k
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5 follow
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 2.0 years ago by Veera 90 • updated 3 months ago by Shicheng Guo7.4k
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 4 months ago by JourneyToAbyss30 • updated 4 months ago by Kevin Blighe37k
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249
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Prune SNPs in LD with a list of SNPs
snp plink ld written 4 months ago by aritra9020
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VCFtools version for LD calculations specifying bin size
vcftools ld written 5 months ago by Stephanie30 • updated 5 months ago by Kevin Blighe37k
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Find all SNPs in linkage disequilibrium
ensembl snp ld written 3.0 years ago by johanne.hh0 • updated 5 months ago by RamRS20k
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SNPs in high LD after LD pruning
ld snprelate written 5 months ago by Ana130 • updated 5 months ago by Kevin Blighe37k
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Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 2.1 years ago by Lou10 • updated 5 months ago by Biostar ♦♦ 20
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Use LD statistics to find proxy SNP
vcf snp ld written 3.0 years ago by sabir.saluja0 • updated 9 months ago by Biostar ♦♦ 20
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Create linkage disequilibrium file
locusexplorer snp linkage disequilibrium plink ld written 9 months ago by Dhana70 • updated 9 months ago by zx87546.6k
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Obtain the LD matrix from a list of SNP
snp ld written 19 months ago by janhuang.cn130 • updated 9 months ago by zx87546.6k
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