Showing: ldreset
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Understanding LD with tassel results
gwas linkage disequilibrium tassel ld gbs written 6 weeks ago by alesierra280 • updated 6 weeks ago by Biostar ♦♦ 20
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LD pruning before imputation?
snp impute plink ld written 7 weeks ago by whtopjazz0 • updated 7 weeks ago by zx87546.2k
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find LD of list of SNPs, located on different chromosomes
different chromosomes list snps ld written 7 weeks ago by anamaria0 • updated 7 weeks ago by toralmanvar730
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 12 months ago by J.F.Jiang730 • updated 8 weeks ago by zx87546.2k
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Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 23 months ago by Veera 90 • updated 8 weeks ago by Shicheng Guo7.3k
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 3 months ago by Werewolf10 • updated 3 months ago by Kevin Blighe35k
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Prune SNPs in LD with a list of SNPs
snp plink ld written 3 months ago by aritra9020
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VCFtools version for LD calculations specifying bin size
vcftools ld written 4 months ago by Stephanie30 • updated 3 months ago by Kevin Blighe35k
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Find all SNPs in linkage disequilibrium
ensembl snp ld written 2.9 years ago by johanne.hh0 • updated 4 months ago by RamRS20k
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SNPs in high LD after LD pruning
ld snprelate written 4 months ago by Ana130 • updated 4 months ago by Kevin Blighe35k
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Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 2.0 years ago by Lou10 • updated 4 months ago by Biostar ♦♦ 20
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Use LD statistics to find proxy SNP
vcf snp ld written 2.9 years ago by sabir.saluja0 • updated 8 months ago by Biostar ♦♦ 20
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Create linkage disequilibrium file
locusexplorer snp linkage disequilibrium plink ld written 8 months ago by Dhana70 • updated 8 months ago by zx87546.2k
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Obtain the LD matrix from a list of SNP
snp ld written 18 months ago by janhuang.cn120 • updated 8 months ago by zx87546.2k
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Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 5.2 years ago by Javier2013110 • updated 11 months ago by hfang40
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Negative and positive linkage disequilibrium
linkage gwas plink ld written 2.3 years ago by fatima10 • updated 11 months ago by seta1.1k
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