Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: ld • reset
or   Classic search
<prev • 87 results • page 1 of 3 • next >
0
votes
2
answers
128
views
2
answers
Obtain the LD matrix from a list of SNP
snp ld written 5 days ago by janhuang.cn • 10 • updated 21 hours ago by aays • 20
0
votes
1
answer
111
views
1
answer
Haploview cannot connect to the internet?
haploview ld written 24 days ago by Sheila • 170 • updated 24 days ago by Pierre Lindenbaum ♦ 96k
1
vote
0
answers
131
views
0
answers
Window and step size for LD-independent SNPs
plink ld snp r2 written 4 weeks ago by willgilks • 210
0
votes
0
answers
113
views
0
answers
Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
ld snps 1000genome mutations written 6 weeks ago by bioinforesearchquestions • 80
0
votes
0
answers
129
views
0
answers
Using Plink to calculate LD between loci on different chromosomes
ld plink snp written 9 weeks ago by jr.azaria • 0
1
vote
1
answer
161
views
1
answer
Is it more correct to use r2 or D' for selecting SNPs in LD?
linkage disequilibrium ld written 4 months ago by Milos Pjanic • 20 • updated 10 weeks ago by Vincent Laufer • 870
2
votes
2
answers
300
views
2
answers
LD calculation using LD plugin for VEP
linkage disequilibrium vep ld written 3 months ago by eXpander • 70 • updated 3 months ago by Ben_Ensembl • 280
0
votes
0
answers
314
views
0
answers
Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 6 months ago by Lou • 0 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
2.3k
views
0
answers
Problems Using R2 (Ld Decay) Command In Plink!
ld plink snp plot written 3.7 years ago by Javier2013 • 100 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
170
views
1
answer
Simulate genotypes based on reference genotypes with same LD structure?
simulate plink ld genotype written 5 months ago by Veera • 60 • updated 5 months ago by Petr Ponomarenko • 2.4k
4
votes
1
answer
303
views
1
answer
Adding gene diagram to output from snp.plotter
gene diagram ld heatmap written 5 months ago by Vincent Laufer • 870 • updated 5 months ago by cannin • 220
1
vote
0
answers
249
views
0
answers
Locus Zoom issues no error but prints file with no LD information displayed
linkage disequilibrium ld locuszoom written 5 months ago by Vincent Laufer • 870
7
votes
2
answers
1.7k
views
2
answers
Ld Mapping Using A ~30G File With Perl Script
perl ld written 4.7 years ago by J.F.Jiang • 640 • updated 7 months ago by Biostar ♦♦ 20
4
votes
2
answers
7.4k
views
5 follow
2
answers
Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 3.8 years ago by Javier2013 • 100 • updated 7 months ago by mpt.gene.93 • 0
1
vote
1
answer
472
views
1
answer
Linkage Disequilibrium to Rare SNPs
linkage disequilibrium ld written 15 months ago by Shicheng Guo • 4.4k • updated 8 months ago by Biostar ♦♦ 20
6
votes
1
answer
711
views
1
answer
Vcftools r2 Error: Insufficient sites remained after filtering or No data left for analysis!
vcftools ld r2 written 14 months ago by hellbio • 230 • updated 8 months ago by zhengchenfei • 30
0
votes
0
answers
296
views
0
answers
Variant calling and linkage disequilibrium when using de novo assembles
linkage assembly snp assembly-quality ld written 8 months ago by avismirabilis • 40
0
votes
1
answer
548
views
1
answer
PLINK: Compute LD from list of SNPs using 1000 Genomes
1000 genomes plink ld written 9 months ago by 8chocinco • 0 • updated 9 months ago by Floris Brenk • 790
0
votes
0
answers
298
views
0
answers
Linkage disequlibrium decay for a haploid fungi
haploid snp ld written 9 months ago by jigarnt • 30
0
votes
0
answers
312
views
0
answers
Negative and positive linkage disequilibrium
linkage gwas plink ld written 9 months ago by fatima • 10
0
votes
0
answers
347
views
0
answers
Calculate linkage disequilibrium from Hudson's ms simulated binary data
hudson ms software cosi ld r2 written 11 months ago by Mr Locuace • 10 • updated 10 months ago by Biostar ♦♦ 20
3
votes
3
answers
499
views
3
answers
Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 12 months ago by Bahar • 40 • updated 12 months ago by chrchang523 • 2.4k
0
votes
0
answers
319
views
0
answers
Is it possible to get LD statistics keeping haplotype in mind?
shapeit haplotype plink ld r2 written 12 months ago by QVINTVS_FABIVS_MAXIMVS • 1.9k
0
votes
0
answers
804
views
0
answers
How to plot LD decay?
ld r2 written 14 months ago by akang • 90
0
votes
0
answers
422
views
0
answers
Generalization of the concept of LD to polyallelic variants and / or variants that are within SV and CNV events
sv linkage disequilibrium ld cnv snv written 15 months ago by Vincent Laufer • 870
0
votes
0
answers
655
views
0
answers
Population-wise decay of linkage disequilibrium (LD)
plink ld plot written 16 months ago by akang • 90
0
votes
1
answer
980
views
1
answer
Use LD statistics to find proxy SNP
vcf snp ld written 17 months ago by sabir.saluja • 0 • updated 17 months ago by Veera • 60
0
votes
1
answer
772
views
1
answer
Find all SNPs in linkage disequilibrium
ensembl snp ld written 17 months ago by johanne.hh • 0
1
vote
0
answers
517
views
0
answers
LD plot for both microsatellites and SNP data (Haploview)
ld written 17 months ago by Shicheng Guo • 4.4k
0
votes
2
answers
697
views
2
answers
How to remove the high correlated SNPs in R
snp ld written 17 months ago by zwang10 • 0 • updated 17 months ago by swti6690 • 0
<prev • 87 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • Bergen, Norway, 1 minute ago
  • United Kingdom, 1 minute ago
  • France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
  • Brazil, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1273 users visited in the last hour