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<prev • 152 results • page 1 of 6 • next >
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LD Complete lookup table problem
pop_gen ldhat ld written 9 days ago by timothy.delory • 0
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105
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GWAS results and linkage disequilibrium issue
gwas linkage disequilibrium ld risk score written 24 days ago by seta • 1.4k
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2
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Is there a list of high Linkage Disequilibrium (LD) regions for genome Build 38?
gwas gwas qc build 38 ld linkage disequilibrium written 8 months ago by yy237 • 20 • updated 11 weeks ago by arctic • 20
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286
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1
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What is a suitable LD threshold for LD pruning of snp data?
snp eqtl ld written 3 months ago by Colari19 • 50 • updated 3 months ago by reza.jabal • 440
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152
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LD calculation with plink
ld sequence plink snp written 4 months ago by naghme.vahabi94 • 0
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1
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429
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1
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Pruning GWAS summary statistics for LD
plink ldpred pruning ld cojo written 4 months ago by ika • 40 • updated 4 months ago by Sam • 3.2k
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5 follow
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How Can I Make An Ld Plot Of My Region Of Interest Using 1000 Genomes Data?
1000genomes haplotype ld snp written 8.4 years ago by mdgallagher71 • 20 • updated 4 months ago by Biostar ♦♦ 20
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1.6k
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Controlling For Linkage Disequilibrium
genome linkage snp ld written 6.8 years ago by anthillparks • 30 • updated 4 months ago by Biostar ♦♦ 20
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1
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186
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1
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Plink 1.9 haplotype blocks with not phased data
blocks plink ld phased written 5 months ago by Peixe • 600 • updated 5 months ago by chrchang523 ♦ 7.3k
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132
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Trying to figure out coordinates for long range LD regions on build 38 for flashpca
flashpca ld written 6 months ago by curious • 450
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464
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1
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How to calculate the LD from a list of SNPs using plink
snp ld plink written 7 months ago by 1587620186 • 0 • updated 7 months ago by JFF • 0
3
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1
answer
323
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1
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ld-pruning to a specific number of SNPs
linkage ld-pruning plink ld written 8 months ago by javadjamshidi • 40 • updated 8 months ago by chrchang523 ♦ 7.3k
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2
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How to read a ".ld.bin" file produced by PLINK
R plink ld written 2.4 years ago by andreagarcia871 • 60 • updated 8 months ago by lenore.pipes • 20
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211
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1
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Linkage disequilibrium with one sample
ld plink19 written 9 months ago by felipead66 • 70 • updated 9 months ago by chrchang523 ♦ 7.3k
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246
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1
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Consistency of LD in the two populations
consistency ld written 10 months ago by adele • 60 • updated 10 months ago by Yean • 120
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284
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How to calculate linkage disequilibrium (LD) with only two genomes?
linkage disequilibrium plink ld vcftools written 10 months ago by KL_STKLBK • 0
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2
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361
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2
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How do I compute ld blocks from the hapmap ld_data?
snps ld written 10 months ago by endrebak • 840
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126
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How many Individuals should I use in order to define haploblocks?
sample size haploblocks ld population genetics written 11 months ago by rimgubaev • 190
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1
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288
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1
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Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
--ld plink ld written 11 months ago by Tao • 420 • updated 11 months ago by chrchang523 ♦ 7.3k
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247
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Interpret contribution of regions in Partitioning heritability enrichment result
ldsc enrichment snp ld written 14 months ago by niu.shengyong • 60
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216
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What does the exclamation mark (!) means in Haploview output?
haploview ld haploblocks written 15 months ago by rimgubaev • 190
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225
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Is it possible to assign haplotypes to individuals using haploview?
vcf haplotype blocks haploview ld plink written 15 months ago by rimgubaev • 190
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276
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Anyone have experience with crossing methylation markers (CpGs) with SNPs?
gwas ld snp cpg written 15 months ago by spela.salamon • 0
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1
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614
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1
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 16 months ago by spela.salamon • 0 • updated 16 months ago by Corentin • 450
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362
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How to make association studies using haplotype (LD) blocks instead of SNPs?
snps gwas haplotype ld written 16 months ago by rimgubaev • 190
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256
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1
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Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 16 months ago by Pramod Shinde • 0 • updated 16 months ago by Asaf ♦ 8.4k
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338
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merge files with PLINK
snp plink ld written 16 months ago by Myosotis1979 • 10
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822
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 16 months ago by felipead66 • 70 • updated 16 months ago by RamRS ♦ 30k
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914
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Estimating LD score in PLINK
ldscore plink ld written 17 months ago by GabrielMontenegro • 560 • updated 17 months ago by RamRS ♦ 30k
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1
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374
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1
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Find region that full captures association signal
gwas ld pvalue written 17 months ago by User 7754 • 240 • updated 17 months ago by christopher medway • 440
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