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<prev • 105 results • page 1 of 4 • next >
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How to calculate SNP LD values from haplotype data
haplotype linkage disequilibrium ld snp written 5 weeks ago by williamtenoriotenorio • 0
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100
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r-squared calculation && GAP package error
R snp linkage disequilibrium plink ld written 6 weeks ago by Mk • 0
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103
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Generating random sets of LD-independent SNPs from GWAS and calculating an empirical p-value
snp permutation testing empirical p-value r2 ld written 9 weeks ago by AB • 0
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1
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116
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1
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How to match alleles for a pair of SNPs using PLINK?
allele matching plink ld written 10 weeks ago by Tao • 230
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1
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133
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1
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How to read a ".ld.bin" file produced by PLINK
R plink ld written 11 weeks ago by andreagarcia871 • 60
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2.5k
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1
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Use LD statistics to find proxy SNP
vcf snp ld written 2.5 years ago by sabir.saluja • 0 • updated 3 months ago by Biostar ♦♦ 20
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1
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262
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1
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Create linkage disequilibrium file
locusexplorer snp linkage disequilibrium plink ld written 3 months ago by Dhana • 60 • updated 3 months ago by zx8754 ♦ 4.8k
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3
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1.8k
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5 follow
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Obtain the LD matrix from a list of SNP
snp ld written 13 months ago by janhuang.cn • 90 • updated 3 months ago by zx8754 ♦ 4.8k
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293
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Linkage Disequilibrium calculation
snps ld written 5 months ago by alessandrotestori7 • 300
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3
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10k
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6 follow
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Plotting Linkage Disequilibrium Decay Across The Genome
snps plink ld plot written 4.8 years ago by Javier2013 • 110 • updated 6 months ago by hfang4 • 0
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1
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1
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Negative and positive linkage disequilibrium
linkage gwas plink ld written 22 months ago by fatima • 10 • updated 6 months ago by seta • 1000
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1
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543
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1
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Plink: compute LD between all SNP pairs
snp linkage disequilibrium plink ld written 6 months ago by rmf • 320 • updated 6 months ago by chrchang523 ♦ 3.7k
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311
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simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 7 months ago by J.F.Jiang • 710
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276
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LD between CNVs and exterior SNPs
snp cnv ld written 7 months ago by Ana • 100
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409
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How to convert recombination rate data from LDHAT into a recombination map for imputation in IMPUTE2
recombination ld genetic map written 8 months ago by Shab86 • 220
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1
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466
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1
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Haplotype LD block without genotypes
gwas haplotype ld written 9 months ago by alessandrotestori7 • 300 • updated 8 months ago by sathish.periyasamy • 20
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1
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855
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1
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linkage disequilibrium analysis
different chromosomes snps ld written 9 months ago by tarek.mohamed • 180 • updated 9 months ago by Kevin Blighe ♦ 26k
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2.0k
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1
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How to plot LD decay?
ld r2 written 2.2 years ago by akang • 90 • updated 9 months ago by gezgrm • 0
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473
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regioneR, but for Linkage Disequilibrium, not just overlap?
ld snp written 10 months ago by Philipp Bayer ♦ 5.6k
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310
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veqtl-mapper in a replication study --perm option
permutations veqtl-mapper ld replication written 10 months ago by DataFanatic • 100
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2
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1.1k
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2
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ld matrix in plink
matrix ld written 12 months ago by janhuang.cn • 90 • updated 10 months ago by DataFanatic • 100
1
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1
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815
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1
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plink calculating LD using R2 command
plink ld r2 written 10 months ago by janhuang.cn • 90 • updated 10 months ago by pfs • 250
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480
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1
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GWAS: How to estimate probability of SNP association being result of one specific regulatory element, rather than others in LD
calculus gwas snp ld algorithms written 11 months ago by michael.nagle • 90 • updated 11 months ago by Sam • 2.1k
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623
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Haploview cannot connect to the internet?
haploview ld written 13 months ago by Sheila • 240 • updated 13 months ago by Pierre Lindenbaum ♦ 111k
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0
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640
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Window and step size for LD-independent SNPs
plink ld snp r2 written 14 months ago by willgilks • 240
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428
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Is there any tool to extract LD SNPs based on any other databases (except 1K database)?
ld snps 1000genome mutations written 14 months ago by bioinforesearchquestions • 150
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571
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Using Plink to calculate LD between loci on different chromosomes
ld plink snp written 15 months ago by jr.azaria • 0
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895
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1
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Is it more correct to use r2 or D' for selecting SNPs in LD?
linkage disequilibrium ld written 17 months ago by Milos Pjanic • 20 • updated 15 months ago by Vincent Laufer • 980
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2
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735
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LD calculation using LD plugin for VEP
linkage disequilibrium vep ld written 16 months ago by eXpander • 90 • updated 16 months ago by Ben_Ensembl • 600
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Paper for Plink LD clumping 'greedy algorithm'
gwas greedy plink ld clumping written 19 months ago by Lou • 0 • updated 17 months ago by Biostar ♦♦ 20
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