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ld-pruning to a specific number of SNPs
linkage ld-pruning plink ld written 12 days ago by javadjamshidi30 • updated 12 days ago by chrchang5236.5k
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How to read a ".ld.bin" file produced by PLINK
R plink ld written 21 months ago by andreagarcia87160 • updated 13 days ago by lenore.pipes20
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Linkage disequilibrium with one sample
ld plink19 written 7 weeks ago by felipead6650 • updated 7 weeks ago by chrchang5236.5k
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102
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Consistency of LD in the two populations
consistency ld written 7 weeks ago by adele60 • updated 7 weeks ago by Yean10
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Inspect the LD relation between a single pair of SNPs in detail using Plink --ld
--ld plink ld written 3 months ago by Tao370 • updated 3 months ago by chrchang5236.5k
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Post GWAS Interpretation - What Next?
gwas haplotype ld written 3 months ago by petebrotherwood30 • updated 3 months ago by Kevin Blighe55k
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Finding a SNP in LD with a known SNP (rs number) on a list of SNPs
snp ld written 7 months ago by spela.salamon0 • updated 7 months ago by Corentin450
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Linkage disequilibrium in Human Mitochondrial genome
mitochondria association ld linkage disequilibrium written 8 months ago by Pramod0 • updated 8 months ago by Asaf7.0k
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merge files with PLINK
snp plink ld written 8 months ago by Myosotis197910
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Linkage disequilibrium from multi-sample vcf file
vcf snpeff vcftools ld written 8 months ago by felipead6650 • updated 8 months ago by RamRS25k
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Estimating LD score in PLINK
ldscore plink ld written 9 months ago by GabrielMontenegro540 • updated 9 months ago by RamRS25k
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Find region that full captures association signal
gwas ld pvalue written 9 months ago by User 7754230 • updated 9 months ago by christopher medway440
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How to plot LD decay?
ld r2 written 3.8 years ago by akang90 • updated 9 months ago by Kevin Blighe55k
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PLINK LD matrix determine what variants were removed
ld plink snp written 9 months ago by andhamel0 • updated 9 months ago by chrchang5236.5k
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minimum snp number from set in LD
snps ld minimum snp number written 10 months ago by RNAseqer 130 • updated 10 months ago by MatthewP390
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Proxy SNPs from 1000 genome phase3
snp plink ld written 11 months ago by bayoteju10
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Add rsid to LD output from vcftools
vcf snp ld vcftools written 4.3 years ago by jfertaj90 • updated 11 months ago by zx87549.0k
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PLINK --r2 square: snp ids are not written
snp plink ld r2 written 12 months ago by Hamid10 • updated 12 months ago by chrchang5236.5k
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Get all SNPs that are in high linkage disequilibrium (based on D') for a set of SNPs
snp plink ld written 13 months ago by Mr Locuace100 • updated 13 months ago by chrchang5236.5k
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