leukemia Posts

C: Detecting highly variable genes within replicates by pawan12394 • 0
Can a vst transformation be used insted of rlog ?
A: Plot read density across a normalized gene model for its each exon/intron length by benformatics • 1.2k
You could try the [Guitar][1] package. [1]: https://bioconductor.org/packages/release/bioc/htm...
C: Is 1 deleted T in a T stretch always detected, assuming enough coverage of cours by Marvin • 150
"I guess you simply do not have a variant and all you see are artifacts" -> No, in my made up ...
C: Bioinformatics vs. the Climate Crisis by Emily_Ensembl ♦ 20k
Is bioinformatics needed for producing lab-grown meat? That's certainly one way to reduce cattle ...
C: Bioinformatics vs. the Climate Crisis by Joe ♦ 15k
We definitely need innovative approaches to solve the problem whilst thinking a little outside th...
C: Plot read density across a normalized gene model for its each exon/intron length by kashiff007 • 130
Thanks but unfortunately none of the above work for gene model normalization.
C: Integrating scRNA-seq datasets with different numbers of biological replicates by ATpoint ♦ 26k
I removed the links to your website from this and all your previous posts. Please stop advertisin...
C: conversion between branch length to SNP numbers by thomasrsewell • 0
Did you solve this? Do you need to include the rate of heterogeneity in your conversion calculati...
A: How to adjust/add cytoband information in specific regions of karyoplot? by zx8754 ♦ 8.6k
Not tested (will check later when have more time). *kp$cytobands* has cytoband ranges, we need t...
A: Plot read density across a normalized gene model for its each exon/intron length by yusuf • 30
1 - tool - http://www.iam.u-tokyo.ac.jp/nakatolab/softwares/drompa/index.html 2 - by SGA files ht...
A: Integrating scRNA-seq datasets with different numbers of biological replicates by Biological information research group of Harbin medical university daqing campus • 10
If you want to integrate several different scrna-seq data sets, you can use Seurat3.
C: Working with VEP in anaconda by Emily_Ensembl ♦ 20k
needs to be `--genomes` at the end, not `--genome`