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CrossMap liftover: REF alleles in VCF files overwritten by reference genome file.
vcf crossmap liftover affymetrix genotyping written 20 days ago by freezingsleet97 • 10
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187
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bwtool stalled liftover
bigwig liftover bwtool written 3 months ago by rbronste • 230
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166
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0
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Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 3 months ago by bg1116 • 0
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305
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How to create a BED file for liftOver form Plink .bed .bim and .fam filed
bed plink liftover written 5 months ago by o.ajnakina • 10
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222
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LiftOver Building a pseudo-molecule
liftover written 6 months ago by erik.kastman • 10
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210
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rs number conversion when performing liftover from hg18tohg19
snp liftover written 6 months ago by giulia.pagani • 0
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283
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GFF liftOver using CrossMap is failing.
software error gff crossmap liftover written 6 months ago by kirannbishwa01 • 890
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1
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182
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1
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What is the name of this build What is equivalent to build37.fa.bz2
vcf remap liftover written 7 months ago by Daisy • 10 • updated 7 months ago by finswimmer ♦ 7.8k
147
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3
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72k
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89 follow
3
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.8 years ago by Malachi Griffith ♦ 17k
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2
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357
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2
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comparing annotations between genomes.
annotation gff crossmap liftover written 11 months ago by Ric • 190
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458
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Help Please! Stuck in .bed format and need to convert for Impute2
impute2 liftover written 12 months ago by whit18 • 10
5
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1
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860
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1
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Crossmap liftover: Chromosome changed between hg38 and hg19???
next-gen liftover sequencing written 16 months ago by skim • 20 • updated 16 months ago by Devon Ryan ♦ 86k
3
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1
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676
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1
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Extracting VCF information to use in LiftOver
vcf liftover written 16 months ago by cookersjs • 10 • updated 16 months ago by Pierre Lindenbaum ♦ 115k
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890
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SNP array liftover data with p values
p value snp liftover written 3.0 years ago by nuketbilgen • 30 • updated 17 months ago by Biostar ♦♦ 20
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2
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1.5k
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2
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Build 21 - Which Hg (Liftover)?
liftover written 6.3 years ago by zx8754 ♦ 6.0k • updated 19 months ago by Biostar ♦♦ 20
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661
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0
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liftOver narrowPeak file
assembly liftover written 22 months ago by rbronste • 230
4
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2
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601
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2
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Same liftover position for different positions
genome liftover written 22 months ago by priyanka16161 • 0 • updated 22 months ago by dyollluap • 300
3
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2
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2.6k
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2
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How Does Ucsc Liftover Handle Loci That Map To Multiple Genome Positions?
liftover written 7.9 years ago by Andrea_Bio • 2.5k • updated 23 months ago by apa@stowers • 380
3
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999
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Best tools for lifting over genome coordinates for non model organism (custom) reference genomes
liftover written 2.0 years ago by William • 4.3k
2
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1
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936
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1
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UCSC Liftover from hg19 to chimp changes segment lengths
chimpanzee liftover hg19 written 2.4 years ago by sskvera • 0
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2
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3.4k
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2
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Liftover Bam File
bam samtools liftover written 5.2 years ago by dfernan • 640 • updated 2.4 years ago by microfuge • 950
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2
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953
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2
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Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 2.5 years ago by Irene@Sequencing.com • 230 • updated 2.5 years ago by Denise - Open Targets • 4.7k
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1
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2.2k
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1
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Convert Soft Liftover Usage
liftover conversion written 7.3 years ago by Liyf • 290 • updated 2.6 years ago by Biostar ♦♦ 20
1
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1.1k
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0
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Extracting SNPs from a different genome version
picard samtools liftover written 2.8 years ago by emilyepuckett • 0
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1
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906
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1
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LiftOver with zero-based UCSC chain file
ucsc liftover chain file written 2.8 years ago by Zhenyu • 220 • updated 2.8 years ago by Devon Ryan ♦ 86k
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923
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chain files for mouse mm9 to ensembl version 75
ensembl ucsc chain files liftover bed written 2.9 years ago by Saad Khan • 310 • updated 2.9 years ago by Emily_Ensembl ♦ 16k
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882
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Sequence mapping with reciprocal-best but not liftover chains?
alignment sequence bnmapper liftover written 2.9 years ago by agd27 • 60
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2
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2.3k
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5 follow
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How To Liftover Genomic Regions From Dm3 (Drosophila) To Mm9 (Mouse)
mouse liftover written 6.0 years ago by biorepine • 1.4k • updated 2.9 years ago by Hugo A F Santos • 0
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2.0k
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1
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lift-over hg19 to GRch38
liftover error written 3.0 years ago by kanwarjag • 910
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1
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Pipeable command to Liftover (UCSC) builds?
genome build liftover bash written 3.0 years ago by Tafelplankje • 120 • updated 3.0 years ago by RamRS ♦ 19k
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