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117
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55k
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67 follow
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 4.6 years ago by Malachi Griffith ♦ 16k • updated 4 days ago by devikaparvathy • 10
5
votes
1
answer
235
views
1
answer
Crossmap liftover: Chromosome changed between hg38 and hg19???
next-gen liftover sequencing written 11 weeks ago by skim • 20 • updated 11 weeks ago by Devon Ryan ♦ 71k
3
votes
1
answer
207
views
1
answer
Extracting VCF information to use in LiftOver
vcf liftover written 3 months ago by cookersjs • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 99k
0
votes
0
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613
views
0
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SNP array liftover data with p values
p value snp liftover written 22 months ago by nuketbilgen • 30 • updated 3 months ago by Biostar ♦♦ 20
4
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2
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1.2k
views
2
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Build 21 - Which Hg (Liftover)?
liftover written 5.1 years ago by zx8754 ♦ 3.7k • updated 6 months ago by Biostar ♦♦ 20
0
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0
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289
views
0
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liftOver narrowPeak file
assembly liftover written 8 months ago by rbronste • 150
4
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2
answers
320
views
2
answers
Same liftover position for different positions
genome liftover written 8 months ago by priyanka16161 • 0 • updated 8 months ago by dyollluap • 270
3
votes
2
answers
2.1k
views
2
answers
How Does Ucsc Liftover Handle Loci That Map To Multiple Genome Positions?
liftover written 6.8 years ago by Andrea_Bio • 2.4k • updated 9 months ago by apa@stowers • 320
3
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0
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407
views
0
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Best tools for lifting over genome coordinates for non model organism (custom) reference genomes
liftover written 10 months ago by William • 4.0k
2
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1
answer
442
views
1
answer
UCSC Liftover from hg19 to chimp changes segment lengths
chimpanzee liftover hg19 written 14 months ago by sskvera • 0
5
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2
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2.4k
views
2
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Liftover Bam File
bam samtools liftover written 4.1 years ago by dfernan • 600 • updated 14 months ago by microfuge • 710
1
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2
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494
views
2
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Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 16 months ago by Irene@Sequencing.com • 200 • updated 16 months ago by Denise - Open Targets • 4.0k
2
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1
answer
1.8k
views
1
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Convert Soft Liftover Usage
liftover conversion written 6.1 years ago by Liyf • 290 • updated 17 months ago by Biostar ♦♦ 20
1
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0
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644
views
0
answers
Extracting SNPs from a different genome version
picard samtools liftover written 20 months ago by emilyepuckett • 0
0
votes
1
answer
539
views
1
answer
LiftOver with zero-based UCSC chain file
ucsc liftover chain file written 20 months ago by Zhenyu • 150 • updated 20 months ago by Devon Ryan ♦ 71k
0
votes
0
answers
571
views
0
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chain files for mouse mm9 to ensembl version 75
ensembl ucsc chain files liftover bed written 20 months ago by Saad Khan • 310 • updated 20 months ago by Emily_Ensembl ♦ 13k
0
votes
0
answers
566
views
0
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Sequence mapping with reciprocal-best but not liftover chains?
alignment sequence bnmapper liftover written 21 months ago by agd27 • 50
4
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2
answers
1.8k
views
5 follow
2
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How To Liftover Genomic Regions From Dm3 (Drosophila) To Mm9 (Mouse)
mouse liftover written 4.9 years ago by biorepine • 1.3k • updated 21 months ago by Hugo A F Santos • 0
0
votes
1
answer
1.0k
views
1
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lift-over hg19 to GRch38
liftover error written 22 months ago by kanwarjag • 800
1
vote
1
answer
589
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1
answer
Pipeable command to Liftover (UCSC) builds?
genome build liftover bash written 22 months ago by Tafelplankje • 120 • updated 22 months ago by Ram ♦ 12k
2
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2
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1.5k
views
2
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liftOver error: not reading the coordinate position correctly?
hg18 snp liftover hg19 written 2.9 years ago by Neal • 40 • updated 22 months ago by morovatunc • 360
8
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1
answer
5.2k
views
1
answer
Genome Coordinates Between Assemblies: Liftover A Snp Array
array assembly snp liftover hg19 written 3.7 years ago by Jimbou • 580
3
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1
answer
2.0k
views
1
answer
liftover using GWAS summary data and PLINK binary files (bed/bim/fam)
gwas snp liftover plink written 2.8 years ago by Joey • 410 • updated 2.3 years ago by dora • 70
0
votes
0
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786
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0
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Feasibility of functional Impact prediction of mouse variants based on liftedOver mm10 to hg19 co-ordinates
liftover written 2.6 years ago by Parthav Jailwala • 0
1
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1
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1.2k
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1
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Reversing direction of chain files (E.g. from hg18-->hg19 to hg19-->hg18)
alignment chain files liftover written 2.6 years ago by dylkot • 0 • updated 2.6 years ago by Brian Bushnell ♦ 14k
3
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0
answers
1.8k
views
0
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23andme: Convert Human Assembly Build 36 to Build 37
genome bed format snp liftover written 2.9 years ago by samorjoy • 10 • updated 2.8 years ago by Biostar ♦♦ 20
2
votes
1
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1.3k
views
1
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LiftOver in R (error)
genome R bioconductor liftover written 2.9 years ago by viniciushs.z • 10 • updated 2.9 years ago by Sean Davis ♦ 23k
0
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0
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729
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0
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liftover one to one mappings
onetoone mapping liftover written 2.9 years ago by Saad Khan • 310
3
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0
answers
1.9k
views
0
answers
How to create chain file to change genome coordinates from one genome version to another
chain format remap liftover written 3.1 years ago by iraun • 3.2k • updated 2.9 years ago by Biostar ♦♦ 20
0
votes
0
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2.4k
views
0
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Convert Vcf From Hg18 To Hg19 Using Liftovervcf.Pl
vcf conversion liftover hg written 5.9 years ago by Raony Guimaraes • 100 • updated 3.0 years ago by Biostar ♦♦ 20
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