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4
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2
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1.2k
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2
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Build 21 - Which Hg (Liftover)?
liftover written 4.8 years ago by zx8754 ♦ 3.7k • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
200
views
0
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liftOver narrowPeak file
assembly liftover written 4 months ago by rbronste • 110
4
votes
2
answers
249
views
2
answers
Same liftover position for different positions
genome liftover written 4 months ago by priyanka16161 • 0 • updated 4 months ago by dyollluap • 180
3
votes
2
answers
1.9k
views
2
answers
How Does Ucsc Liftover Handle Loci That Map To Multiple Genome Positions?
liftover written 6.5 years ago by Andrea_Bio • 2.4k • updated 5 months ago by apa@stowers • 320
3
votes
0
answers
293
views
0
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Best tools for lifting over genome coordinates for non model organism (custom) reference genomes
liftover written 6 months ago by William • 3.9k
2
votes
1
answer
356
views
1
answer
UCSC Liftover from hg19 to chimp changes segment lengths
chimpanzee liftover hg19 written 10 months ago by sskvera • 0
5
votes
2
answers
2.2k
views
2
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Liftover Bam File
bam samtools liftover written 3.8 years ago by dfernan • 590 • updated 10 months ago by microfuge • 470
1
vote
2
answers
393
views
2
answers
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 12 months ago by Irene@Sequencing.com • 190 • updated 12 months ago by Denise - Open Targets • 3.9k
2
votes
1
answer
1.7k
views
1
answer
Convert Soft Liftover Usage
liftover conversion written 5.8 years ago by Liyf • 290 • updated 13 months ago by Biostar ♦♦ 20
1
vote
0
answers
540
views
0
answers
Extracting SNPs from a different genome version
picard samtools liftover written 16 months ago by emilyepuckett • 0
0
votes
1
answer
456
views
1
answer
LiftOver with zero-based UCSC chain file
ucsc liftover chain file written 16 months ago by Zhenyu • 150 • updated 16 months ago by Devon Ryan ♦ 68k
0
votes
0
answers
465
views
0
answers
chain files for mouse mm9 to ensembl version 75
ensembl ucsc chain files liftover bed written 17 months ago by Saad Khan • 310 • updated 17 months ago by Emily_Ensembl ♦ 11k
0
votes
0
answers
510
views
0
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SNP array liftover data with p values
p value snp liftover written 18 months ago by nuketbilgen • 30 • updated 17 months ago by Biostar ♦♦ 20
0
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0
answers
484
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0
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Sequence mapping with reciprocal-best but not liftover chains?
alignment sequence bnmapper liftover written 17 months ago by agd27 • 50
4
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2
answers
1.7k
views
5 follow
2
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How To Liftover Genomic Regions From Dm3 (Drosophila) To Mm9 (Mouse)
mouse liftover written 4.6 years ago by biorepine • 1.2k • updated 17 months ago by Hugo A F Santos • 0
0
votes
1
answer
867
views
1
answer
lift-over hg19 to GRch38
liftover error written 18 months ago by kanwarjag • 750
1
vote
1
answer
500
views
1
answer
Pipeable command to Liftover (UCSC) builds?
genome build liftover bash written 18 months ago by Tafelplankje • 110 • updated 18 months ago by Ram ♦ 11k
2
votes
2
answers
1.3k
views
2
answers
liftOver error: not reading the coordinate position correctly?
hg18 snp liftover hg19 written 2.6 years ago by Neal • 40 • updated 18 months ago by morovatunc • 340
8
votes
1
answer
4.8k
views
1
answer
Genome Coordinates Between Assemblies: Liftover A Snp Array
array assembly snp liftover hg19 written 3.4 years ago by Jimbou • 560
112
votes
1
answer
50k
views
66 follow
1
answer
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 4.3 years ago by Malachi Griffith ♦ 15k
3
votes
1
answer
1.8k
views
1
answer
liftover using GWAS summary data and PLINK binary files (bed/bim/fam)
gwas snp liftover plink written 2.5 years ago by Joey • 400 • updated 23 months ago by dora • 70
0
votes
0
answers
708
views
0
answers
Feasibility of functional Impact prediction of mouse variants based on liftedOver mm10 to hg19 co-ordinates
liftover written 2.2 years ago by Parthav Jailwala • 0
1
vote
1
answer
1.0k
views
1
answer
Reversing direction of chain files (E.g. from hg18-->hg19 to hg19-->hg18)
alignment chain files liftover written 2.3 years ago by dylkot • 0 • updated 2.3 years ago by Brian Bushnell ♦ 12k
3
votes
0
answers
1.6k
views
0
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23andme: Convert Human Assembly Build 36 to Build 37
genome bed format snp liftover written 2.6 years ago by samorjoy • 10 • updated 2.5 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.2k
views
1
answer
LiftOver in R (error)
genome R bioconductor liftover written 2.6 years ago by viniciushs.z • 10 • updated 2.6 years ago by Sean Davis ♦ 23k
0
votes
0
answers
662
views
0
answers
liftover one to one mappings
onetoone mapping liftover written 2.6 years ago by Saad Khan • 310
3
votes
0
answers
1.6k
views
0
answers
How to create chain file to change genome coordinates from one genome version to another
chain format remap liftover written 2.7 years ago by iraun • 3.1k • updated 2.6 years ago by Biostar ♦♦ 20
0
votes
0
answers
2.3k
views
0
answers
Convert Vcf From Hg18 To Hg19 Using Liftovervcf.Pl
vcf conversion liftover hg written 5.6 years ago by Raony Guimaraes • 100 • updated 2.6 years ago by Biostar ♦♦ 20
0
votes
0
answers
604
views
0
answers
Storing liftover chain data in a data structure
comparative genomics datastructure liftover written 2.7 years ago by Saad Khan • 310
1
vote
1
answer
707
views
1
answer
genome version conversion
genome snp liftover written 2.9 years ago by lilia.romdhane • 10 • updated 2.7 years ago by Biostar ♦♦ 20
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