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Liftover nonmodel VCF
chain file satsuma liftover ucsc written 3 days ago by raf.marcondes • 30
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Lifting over results in coordinates that do not agree with what the rsid suggests the coordinates should be?
hla liftover written 6 days ago by curious • 340
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73
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Lifting over and harmonizing a plink file so major allele is forward on hg19?
strand plink liftover written 5 weeks ago by curious • 340
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3
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How to convert genomic region of following type to vcf file?
vcf conversion liftover written 8 weeks ago by svp • 100 • updated 8 weeks ago by Pierre Lindenbaum ♦ 129k
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5 follow
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Converting SNPs from hg19 to hg38
hg38 dbsnp summary statistics liftover hg19 written 9 weeks ago by ika • 30 • updated 9 weeks ago by brunobsouzaa • 210
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110
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LiftoverVcf no output
genome assembly picard liftover sequencing written 9 weeks ago by brismiller • 40
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149
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How to liftover SNPs between different assemblies from different databases?
ncbi ensembl snp liftover assembly written 6 months ago by rimgubaev • 180 • updated 4 months ago by Biostar ♦♦ 20
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751
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rs number conversion when performing liftover from hg18tohg19
snp liftover written 2.2 years ago by giulia.pagani • 10 • updated 4 months ago by andy.wang • 40
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149
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None of the variants updated from hg18 to 19
liftover imputation plink genomebuild written 5 months ago by NS • 0
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NCBI vs Liftover vs ENSEMBL for Assembly Conversion for SNP data (GRCh37 to GRCh38)
ncbi assembly snp liftover ensembl written 9 months ago by sarvism • 0 • updated 6 months ago by Biostar ♦♦ 20
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463
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LiftOver from b37
liftover written 8 months ago by vctrm67 • 10 • updated 8 months ago by Pierre Lindenbaum ♦ 129k
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Sequence mapping with reciprocal-best but not liftover chains?
alignment bnmapper liftover ucsc written 4.6 years ago by agd27 • 100 • updated 10 months ago by ATpoint ♦ 36k
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1
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CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lifted over
crossmap liftover written 11 months ago by mrodrigues.fernanda • 40 • updated 11 months ago by Brice Sarver • 3.5k
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Ideas on how to evaluate genomic coordinates remapping tools?
assembly remap remapping liftover variants written 12 months ago by juliette • 20 • updated 12 months ago by WouterDeCoster ♦ 44k
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Create Chain File for Converting Genome Coordinates
genome assembly coordinates liftover alignment written 12 months ago by Gabriel • 30 • updated 12 months ago by jean.elbers • 1.4k
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345
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One tool for get genome co-ordinates from rsIDs GWAS sumstats files, then liftOver from hg18 to hg19?
liftover gwas sumstats snp linux written 13 months ago by camerond • 150
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How to creat *over.chain.gz file
liftover chain file written 14 months ago by afli • 190 • updated 13 months ago by Biostar ♦♦ 20
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382
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1
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Convert physical positions from Hg18 to Hg19
liftover written 14 months ago by Mr Locuace • 100 • updated 14 months ago by ATpoint ♦ 36k
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343
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Lifting over macaque microarray data from one species reference (hg19) to another (macaque)
vcf iscan picard microarray liftover written 16 months ago by olikidrod • 0
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CrossMap liftover: REF alleles in VCF files overwritten by reference genome file.
vcf crossmap liftover affymetrix genotyping written 20 months ago by freezingsleet97 • 10 • updated 19 months ago by Biostar ♦♦ 20
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625
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bwtool stalled liftover
bigwig liftover bwtool written 23 months ago by rbronste • 360
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509
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Taking Imputation Results from Build37 to Build38 Using a NEW Chain File
imputation liftover written 24 months ago by bg1116 • 0
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How to create a BED file for liftOver form Plink .bed .bim and .fam filed
bed plink liftover written 2.1 years ago by OAJn8634 • 60
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649
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LiftOver Building a pseudo-molecule
liftover written 2.2 years ago by erik.kastman • 10
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GFF liftOver using CrossMap is failing.
software error gff crossmap liftover written 2.2 years ago by kirannbishwa01 • 1.2k
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What is the name of this build What is equivalent to build37.fa.bz2
vcf remap liftover written 2.3 years ago by Daisy • 60 • updated 2.3 years ago by finswimmer ♦ 13k
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121 follow
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 7.4 years ago by Malachi Griffith ♦ 18k
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comparing annotations between genomes.
annotation gff crossmap liftover written 2.6 years ago by Ric • 300
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Help Please! Stuck in .bed format and need to convert for Impute2
impute2 liftover written 2.7 years ago by whit18 • 20
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Crossmap liftover: Chromosome changed between hg38 and hg19???
next-gen liftover sequencing written 3.0 years ago by skim • 40 • updated 3.0 years ago by Devon Ryan ♦ 96k
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