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5
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1
answer
81
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1
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Functional analysis of RNASeq differentially expressed genes
camera rna-seq ipa gsea limma written 4 days ago by Colari19 • 20 • updated 4 days ago by h.mon ♦ 28k
0
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0
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37
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0
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differential abundance with Voom - blocking per subject - making contrasts
differential abundance limma voom written 5 days ago by gaio.transposon • 0
2
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1
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51
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1
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Finding DEGenes taking into account the DEG of a compared control condition
R sgrna limma rna-seq edger written 9 days ago by mcalleja • 80
0
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1.7k
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0
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Contrast matrix for paired samples in limma
R limma written 3.7 years ago by ddzhangzz • 90 • updated 25 days ago by h.mon ♦ 28k
0
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96
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0
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Defining the design for a complicated multi-level experiment in Limma
R limma rna-seq voom written 25 days ago by Colari19 • 20
3
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1
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102
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1
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Voom with QuSAGE
R qusage limma rna-seq voom written 4 weeks ago by Colari19 • 20 • updated 4 weeks ago by Gordon Smyth • 1.1k
2
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1
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161
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1
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p-value in Limma vs Graphpad
p-value adj p limma graphpad written 4 weeks ago by LuisNagano • 20 • updated 4 weeks ago by dsull • 420
0
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1
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92
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1
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Error when reading microarray idat files from illumina
illumina illuminaio limma R microarray written 4 weeks ago by salamandra • 240 • updated 4 weeks ago by h.mon ♦ 28k
1
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0
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115
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0
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Differential Expression Analysis of Two Groups Time Series Data with Limma
microarray limma rna-seq differential expression written 4 weeks ago by hkarakurt • 80
5
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2
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214
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5 follow
2
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Analyzing normalized microarray data
R microarray limma written 7 weeks ago by klarcha • 0 • updated 5 weeks ago by Gordon Smyth • 1.1k
1
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1
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337
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1
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How to use limma for a categorial outcome variable? Where outcome is the cohort status and predictor is gene expression.
next-gen rna limma rna-seq written 7 months ago by halo22 • 130 • updated 7 weeks ago by Biostar ♦♦ 20
1
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0
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140
views
0
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Multi-factor experiment RNAseq limma-voom
limma rna-seq written 7 weeks ago by judhenaosa • 0
1
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1
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129
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1
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 8 weeks ago by APJ • 20
0
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0
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93
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0
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Making a contrast matrix with multiple co-variates for differential expression analysis
R limma linear model differential expression written 9 weeks ago by dodausp • 120
1
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1
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175
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1
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Limma for metabolomics data
metabolomics R de limma rna-seq written 9 weeks ago by Finn • 0 • updated 9 weeks ago by Kevin Blighe ♦ 51k
1
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1
answer
313
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1
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Looking for a Viable Design Matrix for Differential Gene Expression Using Paired Sample
R bioconductor limma written 9 weeks ago by bdighera • 0
2
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0
answers
312
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0
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Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for doing "Ensemble of Gene Set Enrichment Analyses"
egsea biomart rna-seq edger limma written 11 weeks ago by F. Golestan • 20 • updated 11 weeks ago by RamRS ♦ 24k
6
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0
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323
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0
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Integration of Microarray datasets with different platforms and biological groups
integrating dea batch effect limma microarray written 12 weeks ago by asalimih • 20
8
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1
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174
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1
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How to know expression matrix on GEO is normalized or not?
geo limma written 12 weeks ago by MatthewP • 290 • updated 12 weeks ago by jared.andrews07 • 3.9k
0
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0
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139
views
0
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Namespace dependency not required limma
R bioconductor limma written 12 weeks ago by Dylan Wang • 40 • updated 12 weeks ago by RamRS ♦ 24k
2
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1
answer
199
views
1
answer
illumina ht 12 v4 data analysis
illumina gene expression limma deg annotation written 3 months ago by amin.ghareyazi • 0 • updated 3 months ago by Gordon Smyth • 1.1k
3
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2
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308
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6 follow
2
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Remove duplicate genes with lower significance in microarray data analysis
R limma rna-seq microarray written 3 months ago by banerjeeshayantan • 140 • updated 3 months ago by Chirag Parsania • 1.7k
3
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1
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275
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1
answer
analysis of multiple batches and multiple treatment conditions in scRNA-seq
scrna-seq deseq2 combat limma edger written 3 months ago by Bogdan • 880 • updated 3 months ago by sofiagreen72211 • 30
2
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0
answers
273
views
0
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GSVA - finding consistently enriched pathways between multiple phenotypes?
R gsva limma written 5 months ago by steve.booth • 40 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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178
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0
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MIcroarray data analysis using limma
software error R limma written 3 months ago by banerjeeshayantan • 140
1
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0
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145
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0
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DEG tool for just 2 pair end data
deseq2 limma rna-seq edger written 3 months ago by sabaghianamir70 • 10 • updated 3 months ago by RamRS ♦ 24k
3
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1
answer
361
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1
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Why limma output has logFC when I fit the model to a continuous variable?
limma written 5 months ago by repinementer • 0 • updated 3 months ago by Gordon Smyth • 1.1k
0
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0
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200
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0
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 3 months ago by Mari • 0
2
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1
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225
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1
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Differential Expression Analysis with batches which have different biological groups
R dea limma rna-seq batch effect written 4 months ago by asalimih • 20
1
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0
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212
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0
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Batch effects and MDSPlot in limma
galaxy batcheffects limma mds written 4 months ago by sonayuv • 0
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