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<prev • 205 results • page 1 of 7 • next >
7
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4
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215
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5 follow
4
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Selecting genes that best separate between two groups
ttest feature selection limma filtering rna-seq written 6 days ago by lirongrossmann • 10
0
votes
1
answer
95
views
1
answer
Analyzing specific genes in a microarray (RNA expression)
bioconductor limma microarrays written 2 days ago by Pol • 50 • updated 2 days ago by h.mon ♦ 8.7k
0
votes
1
answer
487
views
1
answer
Removing control probes from hugene20st arrays
microarry hugenest20 limma written 19 months ago by hakimelakhrass • 70 • updated 2 days ago by Kevin Blighe • 1.2k
0
votes
1
answer
997
views
1
answer
Affymetrix miRNA 4.0 Normalization and Analysis
R mirna limma microarray written 19 months ago by VHahaut • 940 • updated 11 days ago by Kevin Blighe • 1.2k
0
votes
0
answers
140
views
0
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Perform differential expression for illumina data
illumina limma differential expression written 12 days ago by Agaz Hussain Wani • 40
2
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1
answer
214
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1
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What are the major differences in the computation of DE genes between deseq2 and limma?
R deseq2 limma differential expression rna-seq written 5 weeks ago by sbrown669 • 10 • updated 16 days ago by Kevin Blighe • 1.2k
3
votes
1
answer
131
views
1
answer
Differential Gene Expression Analysis using data_RNA_Seq_v2_expression_median RSEM.Normalized
R limma rna-seq dge written 19 days ago by gokce.ouz • 30
9
votes
2
answers
698
views
2
answers
different results with normal fit and contrast matrix fit
R limma written 23 months ago by Ice P • 0 • updated 5 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
174
views
0
answers
Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 6 weeks ago by lessismore • 170
0
votes
0
answers
153
views
0
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Limma model matrix question
design matrix contrasts limma rna-seq written 8 weeks ago by greener • 0
0
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0
answers
169
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0
answers
Identify up and down regulated genes in affy data
affy microarray limma written 8 weeks ago by j_jamal96 • 0
0
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0
answers
178
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0
answers
How do I calculate DE genes from RSEM data?
tcga rna-seq rsem limma written 9 weeks ago by snoopy84 • 0
0
votes
0
answers
285
views
0
answers
Comparing statistics in different models
design limma written 9 months ago by Lluís R. • 550 • updated 9 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
199
views
2
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Differential Gene expression analysis and Gene ontology analysis
gcrma gene expression analysis affy limma written 11 weeks ago by anandprem1792 • 0 • updated 10 weeks ago by h.mon ♦ 8.7k
5
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1
answer
267
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1
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fold change in Limma is calculated
limma written 11 weeks ago by Learner • 70
0
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0
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180
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0
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Using limma to find differentially methylated probes across clusters
R contrasts limma methylation written 3 months ago by yura.grabovska • 0
0
votes
0
answers
172
views
0
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NOISeq Batch Correction to RNA-seq data
batch effect noiseq arsynseq rna-seq limma written 3 months ago by endikavarela • 0
23
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2
answers
1.4k
views
2
answers
Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 14 months ago by WouterDeCoster ♦ 21k
4
votes
1
answer
190
views
1
answer
Very low p-values
p-value R results limma microarray written 4 months ago by ab123 • 0
1
vote
1
answer
335
views
1
answer
Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
de limma rna-seq splice junctions written 4 months ago by stefanos.bamopoulos • 30 • updated 4 months ago by Malcolm.Cook • 760
9
votes
1
answer
5.2k
views
1
answer
Can Limma package be used for RNA-Seq Differential gene expression analysis for Quantile normalized log transformed RPKM data
tcga limma rna-seq written 2.4 years ago by David_emir • 200 • updated 4 months ago by biomiha • 10
0
votes
0
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252
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0
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Creating a contrast matrix for some datasets with no replicates with bunch of normal datasets with replicates
affy microarray limma written 4 months ago by Uma • 50
0
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0
answers
239
views
0
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RNA-seq unbalanced batch effect correction
batch effect limma edger rna-seq written 5 months ago by endikavarela • 0
2
votes
2
answers
336
views
6 follow
2
answers
how to set threshold of fdr and p values
limma deg written 5 months ago by flavia • 0 • updated 5 months ago by b.nota • 3.5k
4
votes
1
answer
348
views
1
answer
RNASeq differential expression: How to deal with few genes with extremely high expression levels
mtdna limma rna-seq voom written 6 months ago by komal.rathi • 2.9k • updated 6 months ago by Carlo Yague • 3.2k
4
votes
0
answers
306
views
0
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Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray written 6 months ago by Tom • 10
0
votes
0
answers
231
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0
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Can I perform differential gene expression analysis using the Connectivity Map expression data?
R differnetial gene expression limma cmap written 6 months ago by Johnno • 0
6
votes
3
answers
376
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3
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Creating a targets matrix
limma rna-seq written 7 months ago by seth.m.jarvis • 10 • updated 7 months ago by theobroma22 • 930
1
vote
1
answer
326
views
1
answer
Normalisation of arrays with global changes expected
microarray normalisation limma written 7 months ago by i.sudbery • 1.6k • updated 7 months ago by patrick.bradley • 30
2
votes
1
answer
289
views
1
answer
Combining control samples from 2 separate studies. Model matrix for batch effect?
R limma gene expression model matrix batch effect written 7 months ago by tolgaturant • 20 • updated 7 months ago by Devon Ryan ♦ 70k
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