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3
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Using limma for scRNAseq data
limma scrnaseq written 3 days ago by annadv0 • updated 3 days ago by igor10k
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Limma: how can I maintain molecule names in the matrix?
R limma differential expression written 12 days ago by rbravos870 • updated 11 days ago by Kevin Blighe59k
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DESeq2/RNA-Seq: Cross-study comparisons with large control-variance?
deseq2 rna-seq edger limma written 15 days ago by Felix0 • updated 14 days ago by Kevin Blighe59k
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13 follow
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Trying to understand the maths behind one Limma function
batch effect limma rna-seq batch written 28 days ago by Mozart190 • updated 28 days ago by Gordon Smyth1.6k
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Limma contrasts in Time series analysis
time series makecontrasts limma rna-seq written 28 days ago by anoopta880 • updated 28 days ago by ATpoint34k
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Illumina HumanHT-12 V4.0 expression beadchip
R limma lumi written 7 weeks ago by zelda20 • updated 7 weeks ago by Kevin Blighe59k
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109
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Confusion about Limma group design
R limma written 8 weeks ago by A3.7k • updated 8 weeks ago by ATpoint34k
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116
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Limma for RNA-Seq between two pre-defined clusters.
R limma rna-seq written 9 weeks ago by simran.ven0 • updated 9 weeks ago by Kevin Blighe59k
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Clarity for proper design model matrix with paired sample analysis
R design limma rna-seq statistics written 12 months ago by reskejak20 • updated 9 weeks ago by Biostar ♦♦ 20
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282
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How to know if I should use voomWithQualityWeights() or not?
voom limma deg rna-seq written 12 weeks ago by pedrodcb50 • updated 11 weeks ago by Kevin Blighe59k
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Limma to Compare Bulk RNA Seq using makeContrasts and eBayes
R bioconductor limma rna-seq written 12 weeks ago by crystalize1230 • updated 12 weeks ago by h.mon29k
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197
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Normalizing genes between arrays with Limma
microarray limma written 3 months ago by BioinformaticsLad150 • updated 3 months ago by Gordon Smyth1.6k
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216
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Design matrix for voom: with or without batch blocking?
proteomics R limma voom written 16 months ago by Sebastian Hesse100 • updated 4 months ago by Gordon Smyth1.6k
3
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458
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limma voom problem
R next-gen limma rna-seq voom written 4 months ago by iskysinger0 • updated 4 months ago by Gordon Smyth1.6k
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1.6k
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How to correctly correct for batch effects
removebatcheffect R pvca limma written 15 months ago by Sebastian Hesse100 • updated 4 months ago by Biostar ♦♦ 20
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5 follow
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How to compare two sets of results from Limma?
R limma rna-seq voom written 4 months ago by Colari1940 • updated 4 months ago by kristoffer.vittingseerup3.2k
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4
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How to remove spike ins from illumina beadchip data
ercc illumina limma microarray beadchip written 5 months ago by maria2019100 • updated 5 months ago by Kevin Blighe59k
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Script for analyzing idat (illumina) microarray files with limma, any suggestion?
R idat limma written 3.9 years ago by Pol60 • updated 5 months ago by Gordon Smyth1.6k
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230
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Error in inputting multiple illumina microarray idat files to limma
R idat limma microarray written 5 months ago by maria2019100 • updated 5 months ago by Gordon Smyth1.6k
0
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174
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differential expression analysis with z score normalized microarray data
microarray deg limma written 5 months ago by gracie20 • updated 5 months ago by Biostar ♦♦ 20
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422
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