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<prev • 262 results • page 1 of 9 • next >
3
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1
answer
98
views
1
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EnhancedVolcano with gene names
R enhancedvolcano limma written 9 days ago by mannoulag1 • 20
0
votes
0
answers
107
views
0
answers
designing loop for my Linear model function
array limma rna-seq written 13 days ago by rida.rehman • 0 • updated 13 days ago by genomax ♦ 57k
0
votes
1
answer
90
views
1
answer
RNA seq help: limma remove batch effect without full rank design
removebatcheffect limma rna-seq written 14 days ago by jhasselm • 0
6
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2
answers
104
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2
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[limma] LogFC interpretation
R microarray logfc limma written 23 days ago by felix.lappe • 10 • updated 23 days ago by zx8754 ♦ 5.3k
0
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0
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1.2k
views
0
answers
Problem in Heat map generation of DE genes in Agilent Microarray data analysis
R heatmap analysis microarray limma written 2.7 years ago by Vinay Singh • 40 • updated 25 days ago by RamRS ♦ 18k
0
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0
answers
818
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0
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Getting the actually expression values in a DEG analysis
bioconductor microarry limma written 2.6 years ago by hakimelakhrass • 70 • updated 25 days ago by RamRS ♦ 18k
4
votes
1
answer
91
views
1
answer
Illumina bead chip data normalisation
illumina gene expression limma written 26 days ago by elb • 140 • updated 26 days ago by Kevin Blighe ♦ 30k
1
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1
answer
1.1k
views
1
answer
Separate channel analysis of two-color microarray
software error R limma single-channel microarray written 2.6 years ago by acevedo.gonza • 0 • updated 4 weeks ago by RamRS ♦ 18k
0
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0
answers
144
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0
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Fake good model design: sum(result$adj.P.Val<0.05) [1] 1
model design limma model.matrix written 5 weeks ago by BioLite • 0 • updated 5 weeks ago by ATpoint ♦ 8.0k
0
votes
0
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110
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0
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Microarray analysis using limma multiple groups
limma affymetrix microarray written 5 weeks ago by Paul • 60 • updated 5 weeks ago by RamRS ♦ 18k
2
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1
answer
279
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6 follow
1
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
;logfc limma deg toptable written 5 weeks ago by BioLite • 0
0
votes
0
answers
193
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0
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 3 months ago by stefanos.bamopoulos • 30 • updated 5 weeks ago by Biostar ♦♦ 20
1
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1
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1.4k
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1
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gene filtering for agilent microarray using Limma
agilent microarray gene filtering limma R written 3.2 years ago by rohit • 30 • updated 6 weeks ago by Kevin Blighe ♦ 30k
6
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0
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248
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0
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lesser fold change value using RMA background correction
normalization rma microarray deg limma written 6 weeks ago by Paul • 60
5
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0
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161
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5 follow
0
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News: sharing BiocWorkshops 2018
deseq2 rna-seq news limma glimma edger written 7 weeks ago by Bogdan • 660 • updated 7 weeks ago by Pierre Lindenbaum ♦ 113k
0
votes
1
answer
148
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1
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
differential analysis cheminformatics limma edger written 7 weeks ago by Alonzo • 10 • updated 7 weeks ago by Devon Ryan ♦ 85k
0
votes
1
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191
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1
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DE heatmap before or after limma adjustment
de heapmap limma written 3 months ago by boymin2020 • 10 • updated 8 weeks ago by Devon Ryan ♦ 85k
1
vote
1
answer
179
views
1
answer
R Model Matrix has extra columns
R limma rna-seq written 3 months ago by tpham2654 • 0
3
votes
1
answer
1.5k
views
1
answer
Gpr File - Dual Or Single Colour?
R limma written 5.2 years ago by secretjess • 170 • updated 3 months ago by Biostar ♦♦ 20
0
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0
answers
100
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0
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Analysing dose data separately or together
multivariate limma plsda written 3 months ago by ab123 • 30
2
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0
answers
249
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0
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Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
confounding limma rna-seq voom written 3 months ago by stefanos.bamopoulos • 30
1
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0
answers
204
views
0
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Differential expression: High variability inter-samples
deseq2 limma edger written 4 months ago by VHahaut • 1.1k
1
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0
answers
158
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0
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Repeated Measures or Not
linear regression repeated measures limma written 4 months ago by ab123 • 30
4
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1
answer
218
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5 follow
1
answer
Differential expression - design matrix with multiple factors and paired samples
limma rna-seq written 4 months ago by ivanarg2 • 40 • updated 4 months ago by Devon Ryan ♦ 85k
4
votes
1
answer
198
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1
answer
subsetting limma EList in a dataframe
R limma microarray written 4 months ago by salvatore.raieli2 • 30 • updated 4 months ago by Kevin Blighe ♦ 30k
0
votes
1
answer
248
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1
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Noise Analysis for RNAseq Data
deseq2 limma rna-seq voom written 5 months ago by biocool2018 • 10 • updated 5 months ago by Friederike • 2.3k
0
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1
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1.2k
views
1
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How to create "design" for RNA-seq experiment using limma?
design limma rna-seq written 2.7 years ago by Parham • 1.3k • updated 5 months ago by sneha108ss • 0
0
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0
answers
187
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0
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illumina microarray analysis using lumi(lumiR) and limma(read.ilmn)
lumir read.ilmn limma lumi written 5 months ago by swordbreadjj • 0 • updated 5 months ago by WouterDeCoster ♦ 32k
4
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1
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312
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1
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Differences between lfc=log2(1.5) and lcf=1.5
R limma microarray written 5 months ago by Joe Kherery • 30 • updated 5 months ago by h.mon ♦ 20k
4
votes
2
answers
346
views
2
answers
differential gene expression analysis
confounders edger limma rna-seq regression written 5 months ago by DataFanatic • 110
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