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<prev • 194 results • page 1 of 7 • next >
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Using limma to find differentially methylated probes across clusters
R contrasts limma methylation written 19 days ago by yura.grabovska • 0
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82
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NOISeq Batch Correction to RNA-seq data
batch effect noiseq arsynseq rna-seq limma written 29 days ago by endikavarela • 0
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Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 11 months ago by WouterDeCoster ♦ 19k
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1
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117
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1
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Very low p-values
p-value R results limma microarray written 4 weeks ago by ab123 • 0
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198
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1
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Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
de limma rna-seq splice junctions written 6 weeks ago by stefanos.bamopoulos • 30 • updated 6 weeks ago by Malcolm.Cook • 720
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1
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Can Limma package be used for RNA-Seq Differential gene expression analysis for Quantile normalized log transformed RPKM data
tcga limma rna-seq written 2.1 years ago by David_emir • 180 • updated 8 weeks ago by biomiha • 10
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166
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Creating a contrast matrix for some datasets with no replicates with bunch of normal datasets with replicates
affy microarray limma written 8 weeks ago by Uma • 40
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145
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RNA-seq unbalanced batch effect correction
batch effect limma edger rna-seq written 9 weeks ago by endikavarela • 0
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6 follow
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how to set threshold of fdr and p values
limma deg written 10 weeks ago by flavia • 0 • updated 10 weeks ago by b.nota • 3.5k
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251
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1
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RNASeq differential expression: How to deal with few genes with extremely high expression levels
mtdna limma rna-seq voom written 3 months ago by komal.rathi • 2.9k • updated 3 months ago by Carlo Yague • 2.9k
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209
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Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray written 3 months ago by Tom • 10
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147
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Can I perform differential gene expression analysis using the Connectivity Map expression data?
R differnetial gene expression limma cmap written 3 months ago by Johnno • 0
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3
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3
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Creating a targets matrix
limma rna-seq written 4 months ago by seth.m.jarvis • 10 • updated 4 months ago by theobroma22 • 710
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1
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Normalisation of arrays with global changes expected
microarray normalisation limma written 4 months ago by i.sudbery • 1.3k • updated 4 months ago by patrick.bradley • 30
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1
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231
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1
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Combining control samples from 2 separate studies. Model matrix for batch effect?
R limma gene expression model matrix batch effect written 4 months ago by tolgaturant • 20 • updated 4 months ago by Devon Ryan ♦ 68k
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348
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Using limma for Differential Expression test
limma differential expression written 6 months ago by v82masae • 20 • updated 4 months ago by Biostar ♦♦ 20
1
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1
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260
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1
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Help for limma DE interpretation.
rnaseq limma written 5 months ago by Picasa • 290 • updated 5 months ago by Devon Ryan ♦ 68k
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275
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How to extract common genes that are DE in each comparisons?
R bioiconductor limma microarray data analysis written 5 months ago by rkpathakbt • 10 • updated 5 months ago by genomax ♦ 29k
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263
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Question: error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma differential expression written 5 months ago by cemcdono • 0
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2
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402
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Multivariable linear regression using Limma package; Model Matrix design
multivariable R model matrix limma linear model written 5 months ago by erfan741 • 20
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694
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1
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Limma strange low p-values.
R limma microarray written 12 months ago by lucasecardozo • 10 • updated 5 months ago by ZoeChing • 0
3
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2
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393
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2
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Help with linear regression model design
differential expession limma written 5 months ago by mforde84 • 560
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1
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636
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1
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Is limma suitable for identifying differentially expressed genes across species?
microarray timecourse gene expression limma written 21 months ago by EvoGen • 10 • updated 5 months ago by Biostar ♦♦ 20
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311
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strange results from differential methylation analysis using limma
R methylation limma written 5 months ago by ZoeChing • 0
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1
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315
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1
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Creating design matrix in LIMMA
R limma written 5 months ago by sgblackpearl • 0 • updated 5 months ago by apa@stowers • 320
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251
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What are all the different methods available for identifying the DEG?
microarray limma written 6 months ago by mathavanbioinfo • 0
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370
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DEG analysis by limma
up and down regulated genes limma written 6 months ago by Shamim Sarhadi • 170
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221
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Comparing statistics in different models
design limma written 6 months ago by Lluís R. • 490
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364
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Weird MA-plot from array data - help?
array R limma written 7 months ago by fanli.gcb • 590
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How can I combine GDSeSet with limma to identify differentially expressed genes?
R gds affy limma gdseset written 7 months ago by StephanieK • 60
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