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77
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R Model Matrix has extra columns
R limma rna-seq written 3 days ago by tpham2654 • 0
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0
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62
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 11 days ago by stefanos.bamopoulos • 30
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1
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1.5k
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1
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Gpr File - Dual Or Single Colour?
R limma written 4.9 years ago by secretjess • 170 • updated 15 days ago by Biostar ♦♦ 20
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50
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0
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Analysing dose data separately or together
multivariate limma plsda written 19 days ago by ab123 • 20
2
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0
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140
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Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
confounding limma rna-seq voom written 24 days ago by stefanos.bamopoulos • 30
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0
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124
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0
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Differential expression: High variability inter-samples
deseq2 limma edger written 4 weeks ago by VHahaut • 1.1k
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86
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Repeated Measures or Not
linear regression repeated measures limma written 4 weeks ago by ab123 • 20
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1
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139
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5 follow
1
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Differential expression - design matrix with multiple factors and paired samples
limma rna-seq written 4 weeks ago by ivanarg2 • 40 • updated 4 weeks ago by Devon Ryan ♦ 81k
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1
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102
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1
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subsetting limma EList in a dataframe
R limma microarray written 5 weeks ago by salvatore.raieli2 • 30 • updated 4 weeks ago by Kevin Blighe ♦ 24k
0
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1
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166
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1
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Noise Analysis for RNAseq Data
deseq2 limma rna-seq voom written 8 weeks ago by biocool2018 • 10 • updated 8 weeks ago by Friederike • 1.8k
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1
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1.1k
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1
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How to create "design" for RNA-seq experiment using limma?
design limma rna-seq written 2.5 years ago by Parham • 1.3k • updated 9 weeks ago by sneha108ss • 0
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0
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107
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0
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illumina microarray analysis using lumi(lumiR) and limma(read.ilmn)
lumir read.ilmn limma lumi written 9 weeks ago by swordbreadjj • 0 • updated 9 weeks ago by WouterDeCoster ♦ 30k
4
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1
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186
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1
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Differences between lfc=log2(1.5) and lcf=1.5
R limma microarray written 9 weeks ago by Joe Kherery • 30 • updated 9 weeks ago by h.mon ♦ 16k
4
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2
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216
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2
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differential gene expression analysis
confounders edger limma rna-seq regression written 9 weeks ago by DataFanatic • 100
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0
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169
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0
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Differential gene Expression analysis
R limma affymetrix written 10 weeks ago by sujasubramanian • 20 • updated 10 weeks ago by h.mon ♦ 16k
3
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0
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217
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0
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How to handle Log2 Transformation that creates Nan Values
geo R microarray limma written 12 weeks ago by farzaneafzali • 10 • updated 12 weeks ago by WouterDeCoster ♦ 30k
8
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1
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291
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5 follow
1
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Design/contrast matrix for Multivariate experimental design in limma
design matrix limma deg written 3 months ago by 1234anjalianjali1234 • 30 • updated 3 months ago by h.mon ♦ 16k
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0
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182
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0
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differential expression analysis from microarray data
microarray limma written 3 months ago by au.rinki.bio • 0
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0
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118
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0
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differential expression from multiple sequencing panels
limma rna-seq differential expression written 3 months ago by glocke01 • 160
3
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2
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458
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2
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The result of differential gene expression analysis should be extracted based on adj.p.value ?
R bioconductor limma microarray toptable() written 6 months ago by R.A. • 20 • updated 3 months ago by swbarnes2 ♦ 3.8k
1
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0
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150
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0
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Design matrix for edge R analysis?
R bioconductor limma edger statistics written 3 months ago by star • 60
2
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1
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198
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1
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removebatcheffect give same foldchange
R limma written 3 months ago by skadum • 20
1
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1
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823
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1
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Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
de limma rna-seq splice junctions written 14 months ago by stefanos.bamopoulos • 30 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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186
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0
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Analysing CGH data from GEO Dataset
R geoquery limma cgh written 4 months ago by salvatore.raieli2 • 30 • updated 3 months ago by zx8754 ♦ 4.6k
1
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0
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101
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0
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How to do within-sample gene comparisons with limma-voom?
limma rna-seq voom written 3 months ago by samey • 10
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1
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539
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1
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Extract genomic feature related to point from mean-variance plot in limma/voom
limma voom written 2.0 years ago by James Ashmore • 2.5k • updated 3 months ago by h.mon ♦ 16k
3
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1
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303
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1
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Limma design and makeContrasts
design makecontrasts limma written 3 months ago by Matina • 150 • updated 3 months ago by theobroma22 • 1.1k
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0
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199
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0
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Differential Gene Analysis
limma rna-seq dge written 4 months ago by kalyanimeha • 20
6
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3
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330
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5 follow
3
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Why different DEGs between my result and the author's result?
microarray differential gene expression limma written 4 months ago by fernardo • 110 • updated 4 months ago by dariober ♦ 9.2k
2
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1
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200
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1
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Differential Expression fro GEO Data
geo R limma rna-seq written 4 months ago by kalyanimeha • 20 • updated 4 months ago by Sean Davis ♦ 24k
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