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Design matrix for voom: with or without batch blocking?
proteomics R limma voom written 13 months ago by hesse.sebastian80 • updated 29 days ago by Gordon Smyth1.4k
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limma voom problem
R next-gen limma rna-seq voom written 5 weeks ago by iskysinger0 • updated 29 days ago by Gordon Smyth1.4k
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How to correctly correct for batch effects
removebatcheffect R pvca limma written 11 months ago by hesse.sebastian80 • updated 5 weeks ago by Biostar ♦♦ 20
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How to compare two sets of results from Limma?
R limma rna-seq voom written 6 weeks ago by Colari1940 • updated 5 weeks ago by kristoffer.vittingseerup3.0k
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How to remove spike ins from illumina beadchip data
ercc illumina limma microarray beadchip written 8 weeks ago by maria201990 • updated 7 weeks ago by Kevin Blighe54k
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Script for analyzing idat (illumina) microarray files with limma, any suggestion?
R idat limma written 3.6 years ago by Pol60 • updated 8 weeks ago by Gordon Smyth1.4k
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Error in inputting multiple illumina microarray idat files to limma
R idat limma microarray written 8 weeks ago by maria201990 • updated 8 weeks ago by Gordon Smyth1.4k
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differential expression analysis with z score normalized microarray data
microarray deg limma written 9 weeks ago by gracie20 • updated 8 weeks ago by Biostar ♦♦ 20
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Differentially expressed genes analysis Limma microarray
R limma microarrays written 9 weeks ago by judhenaosa0 • updated 9 weeks ago by h.mon29k
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Interpretation of normalized counts
normalization limma rna-seq voom written 10 weeks ago by ika10 • updated 10 weeks ago by Devon Ryan94k
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logFC in topTable problem- almost identical to average expression
R bioconductor limma rna-seq voom written 11 weeks ago by pennakiza50 • updated 11 weeks ago by russhh5.1k
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Functional analysis of RNASeq differentially expressed genes
camera rna-seq ipa gsea limma written 3 months ago by Colari1940 • updated 3 months ago by h.mon29k
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Contrast matrix for paired samples in limma
R limma written 3.9 years ago by ddzhangzz90 • updated 3 months ago by h.mon29k
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Voom with QuSAGE
R qusage limma rna-seq voom written 4 months ago by Colari1940 • updated 4 months ago by Gordon Smyth1.4k
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p-value in Limma vs Graphpad
p-value adj p limma graphpad written 4 months ago by LuisNagano40 • updated 4 months ago by dsull830
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Error when reading microarray idat files from illumina
illumina illuminaio limma R microarray written 4 months ago by salamandra280 • updated 4 months ago by h.mon29k
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Analyzing normalized microarray data
R microarray limma written 4 months ago by klarcha0 • updated 4 months ago by Gordon Smyth1.4k
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