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<prev • 416 results • page 1 of 14 • next >
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How can I identify and remove outliers samples based on a MDS plot (limma package)?
R tcga limma edger rna-seq written 36 minutes ago by andresllucena • 0
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202
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Surrogate variable, celltype composition correction and overfitting in DNA methylation data
array sva methylation limma written 3 days ago by Papyrus • 620
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2
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70
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Limma help (creating design matrix)
limma written 5 days ago by d808bc07 • 0
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47
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How to get gene level of differential expression from 2 color channel array with limma?
limma microarray written 5 days ago by MatthewP • 850 • updated 5 days ago by Gordon Smyth • 2.1k
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6 follow
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Microarray analysis in limma
R limma written 3.1 years ago by Leite • 1.1k • updated 7 days ago by Gordon Smyth • 2.1k
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How to analysis 2 color microarray data from GEO with limma?
limma written 14 days ago by MatthewP • 850 • updated 8 days ago by Gordon Smyth • 2.1k
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TCGAbiolinks workflow to perform differential expression analysis using limma method
tcgabiolinks R tcga limma rna-seq written 13 days ago by emibaffo • 0
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116
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Use RLE normalised RNA-seq data in limma?
deseq2 small rna limma rna-seq written 5 weeks ago by nikita.telkar3 • 0
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227
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Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
lasso limma deseq edger rf written 3 months ago by fr • 150 • updated 7 weeks ago by Biostar ♦♦ 20
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171
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sign of logfc in limma
limma differential gene expression analysis written 7 weeks ago by im • 0
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169
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Absence of significant values in the analyzes with GEO2R
geo expression limma written 8 weeks ago by RafaelMP • 110
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1.8k
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Filtering genes with limma-voom
R limma-voom limma rna-seq voom written 8 weeks ago by im • 0
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115
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How calculate the inflation factor after a linear model run with Limma?
inflation epic methylation limma written 9 weeks ago by sara.pischedda01 • 0
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169
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1
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Data processing order: normalisation or batch effect correction first?
R batch_effect limma proteome written 10 weeks ago by Sebastian Hesse • 190
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239
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How to plot heatmap of differentially expressed genes using limma results
expression microarray limma heatmap written 12 weeks ago by saw44 • 10 • updated 12 weeks ago by _r_am ♦ 32k
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Is the TaqMan Advanced miRNA Human A and B Cards a single and dual color microarray
taqman mir array cards limma microrna batch written 12 weeks ago by danielle • 0
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My script is not filtering correctly and it worked previously on 2 datasets
limma affy microarray genefilter written 4.9 years ago by hakimelakhrass • 80 • updated 3 months ago by Biostar ♦♦ 20
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Does the order of the samples matter in the design matrix? (paired samples - limma package)
limma linear model microarray written 3 months ago by cg1440 • 20
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188
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1
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Limma contrasts matrix drops columns and considers them as reference column
design limma written 3 months ago by fr • 150 • updated 3 months ago by Luiz • 30
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184
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Limma contrasts and design: should it be split based on time points?
design limma written 3 months ago by fr • 150
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Contrast matrix for paired samples in limma
R limma written 4.9 years ago by ddzhangzz • 90 • updated 3 months ago by starick.marick • 0
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Clarity for proper design model matrix with paired sample analysis
R design limma rna-seq statistics written 20 months ago by reskejak • 30 • updated 3 months ago by starick.marick • 0
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205
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1
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Differentially expressed genes machine learning classifier
degs machine learning limma written 3 months ago by devknight009 • 30 • updated 3 months ago by Kevin Blighe ♦ 69k
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197
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Non-uniform p-value distribution
dna methylation ewas limma written 3 months ago by calen.p.ryan • 0 • updated 3 months ago by h.mon ♦ 32k
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248
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How to Identify Housekeeping genes from gene expression matrix and normalize the data
normalization housekeeping genes limma edger R written 4 months ago by bioyas • 0
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308
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2
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Getting error when using lmfit (LIMMA) for Microarray data analysis
R microarray limma written 4 months ago by DataStoryTeller • 10
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217
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limma voom normalization of train and test set
machine learning data leakage rna-seq limma written 4 months ago by asalimih • 30
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386
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Too many differentially expressed genes in voom
R limma rna-seq voom written 8 months ago by rzm0015 • 0 • updated 4 months ago by _r_am ♦ 32k
2
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297
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How to choose threshold for filtering low counts before Voom transformation?
R limma rna-seq voom written 5 months ago by ihc.europa • 20 • updated 4 months ago by h.mon ♦ 32k
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206
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1
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Summarize by gene for agilent microarray data - one color
R microarray limma written 4 months ago by salamandra • 350 • updated 4 months ago by Kevin Blighe ♦ 69k
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