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<prev • 323 results • page 1 of 11 • next >
2
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1
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110
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illumina ht 12 v4 data analysis
illumina gene expression limma deg annotation written 7 days ago by amin.ghareyazi • 0 • updated 7 days ago by Gordon Smyth • 950
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2
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188
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6 follow
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Remove duplicate genes with lower significance in microarray data analysis
R limma rna-seq microarray written 16 days ago by banerjeeshayantan • 130 • updated 15 days ago by Chirag Parsania • 1.5k
3
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1
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119
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1
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analysis of multiple batches and multiple treatment conditions in scRNA-seq
scrna-seq deseq2 combat limma edger written 16 days ago by Bogdan • 850 • updated 15 days ago by sofiagreen72211 • 30
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0
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196
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0
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GSVA - finding consistently enriched pathways between multiple phenotypes?
R gsva limma written 11 weeks ago by steve.booth • 40 • updated 16 days ago by Biostar ♦♦ 20
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117
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0
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MIcroarray data analysis using limma
software error R limma written 16 days ago by banerjeeshayantan • 130
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0
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98
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0
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DEG tool for just 2 pair end data
deseq2 limma rna-seq edger written 20 days ago by sabaghianamir70 • 0 • updated 20 days ago by RamRS ♦ 23k
3
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1
answer
219
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1
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Why limma output has logFC when I fit the model to a continuous variable?
limma written 10 weeks ago by repinementer • 0 • updated 23 days ago by Gordon Smyth • 950
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127
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 25 days ago by Mari • 0
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1
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147
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1
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Differential Expression Analysis with batches which have different biological groups
R dea limma rna-seq batch effect written 4 weeks ago by joldare • 10
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128
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0
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Batch effects and MDSPlot in limma
galaxy batcheffects limma mds written 4 weeks ago by sonayuv • 0
11
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2
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191
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8 follow
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 4 weeks ago by zhaoliang0302 • 0 • updated 4 weeks ago by kristoffer.vittingseerup • 2.2k
2
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1
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99
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1
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Microarray data gene name annotation and multiple probes mapped one gene.
microarray limma written 5 weeks ago by MatthewP • 200 • updated 5 weeks ago by Kevin Blighe ♦ 46k
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126
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0
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Extracting Residuals from Differential Expression Model
model residuals limma statistics written 5 weeks ago by JourneyToAbyss • 80
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124
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0
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Reproducing normalized values from raw data in GSE20346
illumina normalization limma neqc quantile written 5 weeks ago by jn_bf • 0
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1
answer
137
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1
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How to proceed after removing batch effect with limma?
batch-effect deseq2 limma rna-seq written 5 weeks ago by slapiiv • 40 • updated 5 weeks ago by Pietro • 90
0
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1
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124
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1
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how to adjust for continuous covariates in limma?
de limma continuous covariates written 5 weeks ago by RNAseqer • 110 • updated 5 weeks ago by i.sudbery ♦ 5.1k
2
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1
answer
208
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1
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limma voom - mean variance trend
limma voom mean-variance trend limma rna-seq voom written 7 weeks ago by furrdinand • 0 • updated 6 weeks ago by Gordon Smyth • 950
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2
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136
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2
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Does is make sense if I select a subset from the count matrix to do DE analysis?
deseq2 limma rna-seq written 6 weeks ago by vw • 20 • updated 6 weeks ago by Bastien Hervé ♦ 4.4k
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184
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0
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model matrix for longitudinal pairwise data: linear regression or linear mixed model?
rnaseq model matrix deseq2 edger limma written 7 weeks ago by agm123 • 0
2
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1
answer
141
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1
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RNAseq: how to make design matrix for limma
deseq2 limma rna-seq written 7 weeks ago by vw • 20 • updated 7 weeks ago by kristoffer.vittingseerup • 2.2k
2
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0
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183
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5 follow
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DE analysis of genes with different number of samples in Tumor and control group
tcga tcga biolinks limma differential expression written 3 months ago by hAjmal • 30 • updated 7 weeks ago by Biostar ♦♦ 20
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2
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446
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How to correctly filer out gene expression matrix by measuring Pearson correlation coefficients?
limma microarray gene-expression written 8 weeks ago by Jurat Shahidin • 80
1
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1
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147
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1
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Filtering proteomics matrix before diff. exp.
deseq2 limma edger written 8 weeks ago by rpraveenkumarbio • 10 • updated 8 weeks ago by JC ♦ 8.2k
2
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1
answer
153
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1
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How to run removeBatchEffect function?
removebatcheffect limma written 8 weeks ago by anamaria • 60 • updated 8 weeks ago by andrew.j.skelton73 ♦ 5.8k
1
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1
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184
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1
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Do we need to filter out control probes and low expressed probes (as given in LIMMA user guide 2016 page number 111) for all Agilent microarray platform
agilent microarray limma written 4 months ago by anandprem1792 • 0 • updated 8 weeks ago by Biostar ♦♦ 20
5
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1
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527
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1
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Illumina bead chip data normalisation
illumina gene expression limma written 11 months ago by elb • 160 • updated 9 weeks ago by murshad.60ali • 10
5
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1
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188
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1
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What is the accurate order of preprocessing steps in DNA Microarray gene expression analysis?
preprocessing limma sam microarray written 10 weeks ago by J. Smith • 0 • updated 10 weeks ago by Santosh Anand ♦ 4.9k
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FDR and mixed FDR in limma fry()
fdr limma written 11 weeks ago by Melinda • 0
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1.1k
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0
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strange results from differential methylation analysis using limma
R methylation limma written 2.6 years ago by ZoeChing • 0 • updated 11 weeks ago by talk2jameed • 0
2
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0
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149
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0
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changing feature names (row names) for expressionset object?
rownames expressionset limma written 11 weeks ago by RNAseqer • 110
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