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<prev • 398 results • page 1 of 14 • next >
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Clarity for proper design model matrix with paired sample analysis
R design limma rna-seq statistics written 17 months ago by reskejak • 30 • updated 2 days ago by starick.marick • 0
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80
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Differentially expressed genes machine learning classifier
degs machine learning limma written 2 days ago by devknight009 • 30 • updated 2 days ago by Kevin Blighe ♦ 66k
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Non-uniform p-value distribution
dna methylation ewas limma written 7 days ago by calen.p.ryan • 0 • updated 6 days ago by h.mon ♦ 31k
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How to Identify Housekeeping genes from gene expression matrix and normalize the data
normalization housekeeping genes limma edger R written 16 days ago by bioyas • 0
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Getting error when using lmfit (LIMMA) for Microarray data analysis
R microarray limma written 27 days ago by DataStoryTeller • 10
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110
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limma voom normalization of train and test set
machine learning data leakage rna-seq limma written 24 days ago by asalimih • 30
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Too many differentially expressed genes in voom
R limma rna-seq voom written 4 months ago by rzm0015 • 0 • updated 4 weeks ago by RamRS ♦ 30k
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How to choose threshold for filtering low counts before Voom transformation?
R limma rna-seq voom written 8 weeks ago by ihc.europa • 20 • updated 4 weeks ago by h.mon ♦ 31k
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Summarize by gene for agilent microarray data - one color
R microarray limma written 5 weeks ago by salamandra • 330 • updated 5 weeks ago by Kevin Blighe ♦ 66k
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148
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limma DEG analysis with count matrix as input
limma microarray meta-analysis written 5 weeks ago by asumani • 60
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1
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139
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1
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R design on 2-way interaction not displaying all options
modeling design limma edger deseq written 5 weeks ago by fr • 130
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1
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169
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1
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differentially expressed genes among multiple groups
degs expression limma rna-seq microarray written 6 weeks ago by Iván • 20 • updated 6 weeks ago by ATpoint ♦ 39k
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254
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1
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DE analysis with limma (What to include in the model?)
de analysis limma differential expression written 8 weeks ago by grayapply2009 • 220
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161
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Using Limma in R to get log2 fold change data for GSE series data, want to get rid of iso-form expression value
R limma microarray written 8 weeks ago by sslimb95 • 0 • updated 8 weeks ago by Alex Nesmelov • 110
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Differential Gene Expression with Replicates for some of the samples
deseq2 rna-seq edger limma written 8 weeks ago by rezaeir75 • 10 • updated 8 weeks ago by Ali T. A. • 30
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236
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Limma: Coefficients not estimable
R limma rna-seq written 8 weeks ago by Davide • 10 • updated 8 weeks ago by h.mon ♦ 31k
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1
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1
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Limma Differential Expression RNASeq, please help
R limma rna-seq written 8 weeks ago by Davide • 10 • updated 8 weeks ago by i.sudbery ♦ 9.3k
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178
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1
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Batch correct batch 2 while leaving batch 1 unchanged.
batch correction machine learning limma written 9 weeks ago by i.sudbery ♦ 9.3k
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226
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1
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Help with differential expression microarray data using oligo: adjusted p values are very high
R oligo microarray limma written 8 weeks ago by gina.abdelaal • 0
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How to Interpreting voom : Mean-variance trend ?
limma rna-seq voom written 8 weeks ago by sunnykevin97 • 140 • updated 8 weeks ago by h.mon ♦ 31k
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178
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Can transcripts per million be fed into edgeR and voom?
R rna-seq edger limma written 9 weeks ago by joetaylor268 • 10 • updated 9 weeks ago by h.mon ♦ 31k
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How to correctly assign the matrix row for DGE analysis?
matrix microarray makecontrasts limma dge written 10 weeks ago by Microuser • 0
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Strange Mean-Variance plot after Voom Normalization (RNAseq)
normalizaton limma rna-seq voom written 12 weeks ago by grayapply2009 • 220 • updated 11 weeks ago by Biostar ♦♦ 20
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How can Differentially Expressed Genes be found by limma package after removing batch effect by ComBat function in sva package?
R sva limma batch effect written 3 months ago by amirmehrgou • 0 • updated 3 months ago by RamRS ♦ 30k
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How to create "design" for RNA-seq experiment using limma?
design limma rna-seq written 4.7 years ago by Parham • 1.5k • updated 3 months ago by Gordon Smyth • 1.9k
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159
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Design matrix for ANOVA using limma
proteomics R limma statistics written 3 months ago by gustavofw • 0
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1
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149
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1
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nearestTSS function in edgeR for differential methylation analysis
rrbs nearesttss limma rna-seq edger written 3 months ago by osa.zuta • 0
6
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1
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226
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1
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Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R humanmethylation450 methylation limma written 3 months ago by geocarvalho • 150 • updated 3 months ago by Charles Warden ♦ 7.9k
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Can one plot % of variance using the plotMDS function?
pcoa plotmds pca limma % of varience written 3 months ago by harelarik • 70 • updated 3 months ago by Gordon Smyth • 1.9k
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350
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6 follow
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Is plotMDS (from limma package) a PCA (Principal Component Analysis) or a PCoA (Principal Coordinate Analysis)?
R plotmds pca limma rna-seq written 3 months ago by harelarik • 70 • updated 3 months ago by Gordon Smyth • 1.9k
<prev • 398 results • page 1 of 14 • next >
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