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<prev • 201 results • page 1 of 7 • next >
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What are the major differences in the computation of DE genes between deseq2 and limma?
R deseq2 limma differential expression rna-seq written 3 days ago by sbrown669 • 10
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2
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665
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different results with normal fit and contrast matrix fit
R limma written 21 months ago by Ice P • 0 • updated 8 days ago by Biostar ♦♦ 20
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115
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Batch effects : ComBat or removebatcheffects (limma package) ?
sva batch effects combat limma written 14 days ago by lessismore • 60
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127
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Limma model matrix question
design matrix contrasts limma rna-seq written 24 days ago by greener • 0
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144
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Identify up and down regulated genes in affy data
affy microarray limma written 25 days ago by j_jamal96 • 0
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140
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How do I calculate DE genes from RSEM data?
tcga rna-seq rsem limma written 4 weeks ago by snoopy84 • 0
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272
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Comparing statistics in different models
design limma written 8 months ago by Lluís R. • 520 • updated 5 weeks ago by Biostar ♦♦ 20
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2
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179
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2
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Differential Gene expression analysis and Gene ontology analysis
gcrma gene expression analysis affy limma written 6 weeks ago by anandprem1792 • 0 • updated 5 weeks ago by h.mon ♦ 8.0k
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1
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1
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fold change in Limma is calculated
limma written 6 weeks ago by Learner • 70
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149
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Using limma to find differentially methylated probes across clusters
R contrasts limma methylation written 10 weeks ago by yura.grabovska • 0
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140
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NOISeq Batch Correction to RNA-seq data
batch effect noiseq arsynseq rna-seq limma written 12 weeks ago by endikavarela • 0
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2
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Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 12 months ago by WouterDeCoster ♦ 20k
4
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1
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160
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1
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Very low p-values
p-value R results limma microarray written 12 weeks ago by ab123 • 0
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294
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1
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Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
de limma rna-seq splice junctions written 3 months ago by stefanos.bamopoulos • 30 • updated 3 months ago by Malcolm.Cook • 750
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Can Limma package be used for RNA-Seq Differential gene expression analysis for Quantile normalized log transformed RPKM data
tcga limma rna-seq written 2.3 years ago by David_emir • 200 • updated 3 months ago by biomiha • 10
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219
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Creating a contrast matrix for some datasets with no replicates with bunch of normal datasets with replicates
affy microarray limma written 3 months ago by Uma • 40
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206
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RNA-seq unbalanced batch effect correction
batch effect limma edger rna-seq written 3 months ago by endikavarela • 0
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292
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6 follow
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how to set threshold of fdr and p values
limma deg written 4 months ago by flavia • 0 • updated 4 months ago by b.nota • 3.5k
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1
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314
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1
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RNASeq differential expression: How to deal with few genes with extremely high expression levels
mtdna limma rna-seq voom written 5 months ago by komal.rathi • 2.9k • updated 5 months ago by Carlo Yague • 3.1k
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269
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Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray written 5 months ago by Tom • 10
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197
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Can I perform differential gene expression analysis using the Connectivity Map expression data?
R differnetial gene expression limma cmap written 5 months ago by Johnno • 0
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3
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Creating a targets matrix
limma rna-seq written 6 months ago by seth.m.jarvis • 10 • updated 6 months ago by theobroma22 • 890
1
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1
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305
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1
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Normalisation of arrays with global changes expected
microarray normalisation limma written 6 months ago by i.sudbery • 1.4k • updated 6 months ago by patrick.bradley • 30
2
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1
answer
271
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1
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Combining control samples from 2 separate studies. Model matrix for batch effect?
R limma gene expression model matrix batch effect written 6 months ago by tolgaturant • 20 • updated 6 months ago by Devon Ryan ♦ 70k
1
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469
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Using limma for Differential Expression test
limma differential expression written 8 months ago by v82masae • 20 • updated 6 months ago by Biostar ♦♦ 20
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1
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325
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1
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Help for limma DE interpretation.
rnaseq limma written 6 months ago by Picasa • 300 • updated 6 months ago by Devon Ryan ♦ 70k
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317
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How to extract common genes that are DE in each comparisons?
R bioiconductor limma microarray data analysis written 7 months ago by rkpathakbt • 10 • updated 7 months ago by genomax ♦ 32k
2
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321
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Question: error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma differential expression written 7 months ago by cemcdono • 0
3
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2
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475
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Multivariable linear regression using Limma package; Model Matrix design
multivariable R model matrix limma linear model written 7 months ago by erfan741 • 20
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1
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766
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1
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Limma strange low p-values.
R limma microarray written 14 months ago by lucasecardozo • 10 • updated 7 months ago by ZoeChing • 0
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