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<prev • 272 results • page 1 of 10 • next >
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Normalize and filter RNA-seq data
limma rna-seq written 18 days ago by Phoenix Mu • 0
9
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1
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166
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1
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How to deal with large inter-sample variation when using GTEx RNA-seq data?
variation deseq2 rna-seq gtex limma written 28 days ago by Akos • 20
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1
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141
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A question about how the kegga function or KEGG analysis in general determines significance.
kegga rna-seq kegg edger limma written 4 weeks ago by brett.vanderwerff • 10
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70
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combine shRNA-Seq on gene level
ngs shrna-seq limma roast written 5 weeks ago by Assa Yeroslaviz • 1.1k
7
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3
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229
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5 follow
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Normalization for small non-coding RNA (piRNAs)
normalization deseq2 limma edger written 7 weeks ago by Konstantinos Yeles • 40 • updated 6 weeks ago by A. Domingues • 1.8k
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109
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How to eliminate batch effect using removeBatchEffect function for tissue expression profiles?
R batch-effect microarray limma written 8 weeks ago by rice.researcher • 130 • updated 8 weeks ago by zx8754 ♦ 6.2k
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233
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1
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RNA seq help: limma remove batch effect without full rank design
R batch-effect limma rna-seq written 3 months ago by jhasselm • 0 • updated 8 weeks ago by zx8754 ♦ 6.2k
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1
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143
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1
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RTqPCR Differential Expression with multivariate linnear models
R limma linnear model written 8 weeks ago by v82masae • 60 • updated 8 weeks ago by Kevin Blighe ♦ 35k
4
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1
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118
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1
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Remove lines from a toptable that have an empty ID (symbol)
gene R toptable limma written 8 weeks ago by mannoulag1 • 30 • updated 8 weeks ago by zx8754 ♦ 6.2k
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3
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16 follow
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How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental Biologist/non-bioinformatician
gene limma edger written 14 months ago by Mike • 1.1k • updated 10 weeks ago by enxxx23 • 200
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1
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Batch effect correction in DE analysis of single cell RNA-seq data and visualization
scde batch effect limma seurat rna-seq written 11 weeks ago by Poorya Parvizi • 40 • updated 11 weeks ago by Praneet Chaturvedi • 100
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258
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1
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RNA-Seq normalization using limma or DESeq2
normalization limma rna-seq dseq2 written 3 months ago by user56 • 10
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1
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224
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1
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EnhancedVolcano with gene names
R enhancedvolcano limma written 3 months ago by mannoulag1 • 30
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210
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designing loop for my Linear model function
array limma rna-seq written 3 months ago by rida.rehman • 0 • updated 3 months ago by genomax ♦ 60k
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2
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258
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2
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[limma] LogFC interpretation
R microarray logfc limma written 3 months ago by felix.lappe • 10 • updated 3 months ago by zx8754 ♦ 6.2k
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1.3k
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Problem in Heat map generation of DE genes in Agilent Microarray data analysis
R heatmap analysis microarray limma written 2.9 years ago by Vinay Singh • 40 • updated 3 months ago by RamRS ♦ 20k
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873
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Getting the actually expression values in a DEG analysis
bioconductor microarry limma written 2.9 years ago by hakimelakhrass • 70 • updated 3 months ago by RamRS ♦ 20k
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1
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186
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1
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Illumina bead chip data normalisation
illumina gene expression limma written 3 months ago by elb • 160 • updated 3 months ago by Kevin Blighe ♦ 35k
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1
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1.2k
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1
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Separate channel analysis of two-color microarray
software error R limma single-channel microarray written 2.9 years ago by acevedo.gonza • 0 • updated 4 months ago by RamRS ♦ 20k
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219
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Fake good model design: sum(result$adj.P.Val<0.05) [1] 1
model design limma model.matrix written 4 months ago by BioLite • 20 • updated 4 months ago by ATpoint ♦ 12k
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215
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Microarray analysis using limma multiple groups
limma affymetrix microarray written 4 months ago by Paul • 70 • updated 4 months ago by RamRS ♦ 20k
2
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1
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396
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6 follow
1
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
;logfc limma deg toptable written 4 months ago by BioLite • 20
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275
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 6 months ago by stefanos.bamopoulos • 30 • updated 4 months ago by Biostar ♦♦ 20
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gene filtering for agilent microarray using Limma
agilent microarray gene filtering limma R written 3.5 years ago by rohit • 30 • updated 4 months ago by Kevin Blighe ♦ 35k
6
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331
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lesser fold change value using RMA background correction
normalization rma microarray deg limma written 4 months ago by Paul • 70
4
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202
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News: sharing BiocWorkshops 2018
deseq2 rna-seq news limma glimma edger written 4 months ago by Bogdan • 690 • updated 4 months ago by Pierre Lindenbaum ♦ 116k
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199
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
differential analysis cheminformatics limma edger written 4 months ago by Alonzo • 10 • updated 4 months ago by Devon Ryan ♦ 87k
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263
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DE heatmap before or after limma adjustment
de heapmap limma written 6 months ago by boymin2020 • 20 • updated 5 months ago by Devon Ryan ♦ 87k
1
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1
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305
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1
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R Model Matrix has extra columns
R limma rna-seq written 6 months ago by tpham2654 • 0
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1
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1.6k
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1
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Gpr File - Dual Or Single Colour?
R limma written 5.4 years ago by secretjess • 170 • updated 6 months ago by Biostar ♦♦ 20
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