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<prev • 370 results • page 1 of 13 • next >
3
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2
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77
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2
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Using limma for scRNAseq data
limma scrnaseq written 3 days ago by annadv • 0 • updated 3 days ago by igor ♦ 10k
0
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1
answer
50
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1
answer
Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
sva differential expression splicing rna-seq limma written 3 days ago by eggerj • 0 • updated 3 days ago by geek_y ♦ 11k
0
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0
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40
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0
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Weights in normalizeCyclicLoess (Limma, R)
R limma normalizecyclicloess written 4 days ago by Sebastian Hesse • 100
2
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1
answer
64
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1
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Does the expression data from GEO Series Matrix File(s) can directly be used with limma workflow
normalization rma micro-array limma R written 10 days ago by spriyansh29 • 30 • updated 10 days ago by Kevin Blighe ♦ 59k
5
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1
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93
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1
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Limma: how can I maintain molecule names in the matrix?
R limma differential expression written 12 days ago by rbravos87 • 0 • updated 11 days ago by Kevin Blighe ♦ 59k
2
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0
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281
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0
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Forum: Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R shapiro-wilk mann-whitney forum limma written 15 days ago by innyus • 10 • updated 12 days ago by heididunst • 0
0
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1
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88
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1
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DESeq2/RNA-Seq: Cross-study comparisons with large control-variance?
deseq2 rna-seq edger limma written 15 days ago by Felix • 0 • updated 14 days ago by Kevin Blighe ♦ 59k
28
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1
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286
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13 follow
1
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Trying to understand the maths behind one Limma function
batch effect limma rna-seq batch written 28 days ago by Mozart • 190 • updated 28 days ago by Gordon Smyth • 1.6k
0
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1
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83
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1
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Limma contrasts in Time series analysis
time series makecontrasts limma rna-seq written 28 days ago by anoopta88 • 0 • updated 28 days ago by ATpoint ♦ 34k
0
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2
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106
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2
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Differential gene expression
R limma differential gene expression written 5 weeks ago by innyus • 10
0
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0
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88
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0
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How to select/exclude specific conditions or cell types for further analysis with Limma?
R bioconductor limma written 5 weeks ago by astromonocyte • 0
2
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1
answer
143
views
1
answer
Illumina HumanHT-12 V4.0 expression beadchip
R limma lumi written 7 weeks ago by zelda • 20 • updated 7 weeks ago by Kevin Blighe ♦ 59k
3
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1
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109
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1
answer
Confusion about Limma group design
R limma written 8 weeks ago by A • 3.7k • updated 8 weeks ago by ATpoint ♦ 34k
0
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1
answer
116
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1
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Limma for RNA-Seq between two pre-defined clusters.
R limma rna-seq written 9 weeks ago by simran.ven • 0 • updated 9 weeks ago by Kevin Blighe ♦ 59k
0
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0
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491
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0
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Clarity for proper design model matrix with paired sample analysis
R design limma rna-seq statistics written 12 months ago by reskejak • 20 • updated 9 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
282
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1
answer
How to know if I should use voomWithQualityWeights() or not?
voom limma deg rna-seq written 12 weeks ago by pedrodcb • 50 • updated 11 weeks ago by Kevin Blighe ♦ 59k
1
vote
1
answer
119
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1
answer
Limma to Compare Bulk RNA Seq using makeContrasts and eBayes
R bioconductor limma rna-seq written 12 weeks ago by crystalize123 • 0 • updated 12 weeks ago by h.mon ♦ 29k
3
votes
1
answer
197
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1
answer
Normalizing genes between arrays with Limma
microarray limma written 3 months ago by BioinformaticsLad • 150 • updated 3 months ago by Gordon Smyth • 1.6k
0
votes
1
answer
216
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1
answer
How to create a proper design matrix/contrast matrix for methylation 850k analysis in limma?
methylation analysis R design matrix 850k limma written 3 months ago by miky.zo • 20
1
vote
2
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610
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2
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Design matrix for voom: with or without batch blocking?
proteomics R limma voom written 16 months ago by Sebastian Hesse • 100 • updated 4 months ago by Gordon Smyth • 1.6k
3
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1
answer
458
views
1
answer
limma voom problem
R next-gen limma rna-seq voom written 4 months ago by iskysinger • 0 • updated 4 months ago by Gordon Smyth • 1.6k
3
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2
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1.6k
views
2
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miRNA differential expression analysis, no significant adjusted p-values
R limma differential expression mirna written 3.8 years ago by Alexander Skates • 360 • updated 4 months ago by husainbioinfos • 0
1
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0
answers
596
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0
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How to correctly correct for batch effects
removebatcheffect R pvca limma written 15 months ago by Sebastian Hesse • 100 • updated 4 months ago by Biostar ♦♦ 20
5
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2
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218
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5 follow
2
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How to compare two sets of results from Limma?
R limma rna-seq voom written 4 months ago by Colari19 • 40 • updated 4 months ago by kristoffer.vittingseerup • 3.2k
2
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0
answers
165
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0
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How to plot gene_names besides CpGs in microarray methylation heatmap?
differential cpg limma heatmap.2 microarray written 4 months ago by maria2019 • 100
4
votes
1
answer
189
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1
answer
How to remove spike ins from illumina beadchip data
ercc illumina limma microarray beadchip written 5 months ago by maria2019 • 100 • updated 5 months ago by Kevin Blighe ♦ 59k
2
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2
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2.9k
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2
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Script for analyzing idat (illumina) microarray files with limma, any suggestion?
R idat limma written 3.9 years ago by Pol • 60 • updated 5 months ago by Gordon Smyth • 1.6k
4
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1
answer
230
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1
answer
Error in inputting multiple illumina microarray idat files to limma
R idat limma microarray written 5 months ago by maria2019 • 100 • updated 5 months ago by Gordon Smyth • 1.6k
0
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0
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174
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0
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differential expression analysis with z score normalized microarray data
microarray deg limma written 5 months ago by gracie • 20 • updated 5 months ago by Biostar ♦♦ 20
0
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0
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422
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0
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Where to set intensity filtering threshold if oligo::rma returns large peak of very low intensities for Affymetrix microarrays?
microarray filtering limma written 10 months ago by Mari • 0 • updated 5 months ago by Biostar ♦♦ 20
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