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written 12 months ago by
wkmustahs21 • 30
• updated
12 months ago by
zx8754 ♦ 8.7k
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Recent Replies
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C: Visualisation of SNPs in R by
Colari19 • 40
Thank you, this is exactly the kind of thing I'm after.
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A: What is the difference between multiple docking and ensemble docking? by
Jean-Karim Heriche ♦ 21k
Ensemble docking refers to the approach of generating multiple structures of the target molecule ...
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C: Visualisation of SNPs in R by
cpad0112 ♦ 12k
see if this vignette makes sense to you: https://bioconductor.org/packages/release/bioc/vignette...
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A: ERROR in sam to bam conversion by
ATpoint ♦ 26k
It is not recommended to directly dump files, be it fastq or sam from NCBI. The connection is too...
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C: How do I compute ld blocks from the hapmap ld_data? by
Kevin Blighe ♦ 52k
Then, first, you have to identify the LD blocks, which are calculated at the SNP level and not th...
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C: Remove part of the header from multi-fasta file (another one) by
cpad0112 ♦ 12k
with [seqkit][1]: $ seqkit replace -p "[-_].*" -r "" input.fa check if it makes sense to re...
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A: Testing similarity between functional genomic annotations by
Jean-Karim Heriche ♦ 21k
There are plenty of similarity measures for binary vectors. Check for example the [R package prox...
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C: Differential expression tool that can take TPM as input? by
ATpoint ♦ 26k
None of it is ideal. You should start from raw counts if possible. If not and TPM is the only thi...
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C: How do I compute ld blocks from the hapmap ld_data? by
endrebak • 800
I thank you for your reply. I should have been more explicit; I wanted bed files with the ld-bloc...
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A: What is the difference between Intracellular Signaling Network and Gene Regulato by
Jean-Karim Heriche ♦ 21k
Intracellular signalling networks are composed of pathways that process signals both from outside...
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C: logFC in topTable problem- almost identical to average expression by
Kevin Blighe ♦ 52k
I just noticed this thread on Bioconductor, too: https://support.bioconductor.org/p/126919/
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C: Differential expression tool that can take TPM as input? by
Tye Kahn • 10
Already searched for it, but none of the results was informative. About the link, CPM, unlike TP...
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