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Recent Votes
- A: Questions regarding VST/rlog correction to plot sample distances between RNA-seq
- C: Convert (Copy Number Variation) CNV to gene
- A: Plotting Human Karyotype - Software
- A: How to create/get cytoband file for Maize (non-model organism) genome
- C: Find Intersections Between ClinVar Track and VCF In IGV
- Convert (Copy Number Variation) CNV to gene
- A: sorting a BAM file
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Recent Replies
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C: fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output by
Shicheng Guo • 5.2k
Just check whether you are latest fastPHASE. I just run it now and -F works.
-
C: Convert (Copy Number Variation) CNV to gene by
Ram ♦ 16k
What do you know of CNVs? CNVs are not comparable to genes, because CNV is a type of mutation and...
-
A: fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output by
1490784292 • 0
hi！do you know how to use the fasephase,I can't get the freqs in output,can you give me some advi...
-
C: sorting a BAM file by
Bogdan • 530
Thank you Philipp for your suggestion !
-
A: sorting a BAM file by
Philipp Bayer ♦ 5.5k
That seems to be a very strange read, how can it have a MAPQ > 0? Anyway, you can either try...
-
C: CWL: Getting output file of a CommandLineTool using glob by
kaushik.ghose • 30
Are the files being produced in the working directory? Do you have Rabix Executor installed by an...
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A: CWL: Getting output file of a CommandLineTool using glob by
inutano • 0
The latest version of cwltool set memory resource 1024m in default ("--memory=1024m" In the log f...
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C: CWL: Getting output file of a CommandLineTool using glob by
skanwal • 20
Same error: [job kallisto-quant.cwl] Job error: Error collecting output for parameter 'q...
-
C: CWL: Getting output file of a CommandLineTool using glob by
kaushik.ghose • 30
Could you try "*.tsv" for the glob please?
-
A: CWL: Getting output file of a CommandLineTool using glob by
skanwal • 20
Hi Kaushik, Thanks for replying. Yes, I have run this tool a few times, using a conda installa...
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A: normal sample of ovarian cancer in TCGA dataset by
Kevin Blighe ♦ 24k
Yes, *Solid Normal Tissue* is one of the 'normal' tissues that were used in the TCGA. You can in...
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A: CWL: Getting output file of a CommandLineTool using glob by
kaushik.ghose • 30
Hi! On the face of it the tool is not producing the abundance.tsv. When you run the tool bare (by...
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