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165

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Converting Ensembl stable ids to symbol, is version ID important for expression data?

lncrnas ensembl ids symbol conversion rna-seq written 7 months ago by Berghopper • 20

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136

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Association database between repetitive elements and ncRNAs

ncrnas lncrnas repetitive elements mirnas written 7 months ago by iraia.munoa • 70

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268

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lncPath deleted from CRAN

R lncrnas networks written 13 months ago by Pin.Bioinf • 260 • updated 13 months ago by zx8754 ♦ 8.3k

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487

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LncRNA isoforms RNA-seq

lncrnas isoforms rna-seq lncrna written 16 months ago by Martin B. • 10

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UCSC genes annotation of long non-coding RNAs in human

annotation lncrnas help rna-seq ucsc written 5.4 years ago by sasa_k • 0 • updated 3.0 years ago by Shicheng Guo • 7.8k

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Job: Open PhD position at bioinformatics group of University Leipzig (Germany)

lncrnas phd position job written 4.7 years ago by David Langenberger ♦ 9.1k

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Recent Replies

C: Is it necessary to trim adaptor sequences? by cpad0112 ♦ 12k
https://www.biostars.org/p/212136/ https://biostar.usegalaxy.org/p/26923/ http://seqanswers.com...
A: invalid compressed data--crc error by sppearce • 10
Did you manage to figure out what the issue was with this? I'm having the same issue with some fi...
C: db-GaP / GTEx analysis on the cloud. Easiest way? by ekwame001 • 10
Another cool thing about working with Google cloud and AnVil/Terra is that there maybe some alre...
C: Codons from rna seq bam file? by h.mon ♦ 28k
Is the reference a genome or transcriptome? Is the reference annotated? By "identify codons from ...
C: Problems installing the new VCF File Visualization tool VIVA by ekwame001 • 10
Ok! I assume you have cloned the [github Repo][1] if you haven't done it yet, you can follow the...
C: Is it necessary to trim adaptor sequences? by JC ♦ 9.1k
FastQC report should tell you if you have adapters and if trimming is needed. Also, SE50 is alrea...
A: Is it necessary to trim adaptor sequences? by swbarnes2 ♦ 6.9k
> I'm afraid that it's going to be too short for alignment (I used > SE50). If trimming a...
C: which scoring matrix to use in shore (shoremap) analysis by h.mon ♦ 28k
The paper [Plant Genetic Archaeology: Whole-Genome Sequencing Reveals the Pedigree of a Classical...
C: Problems installing the new VCF File Visualization tool VIVA by Amar • 400
Which code exactly? Is it step 2? edit: IMO that's a horrible installation setup. Not really wor...
C: Problems installing the new VCF File Visualization tool VIVA by ekwame001 • 10
sorry which specific line of the codes were you referring to? julia ]add VariantVisuali...
C: comparing multiple gene sets with expression values by h.mon ♦ 28k
If you already have the fold-changes, a heatmap like this can be made in MicroSoft Excel or Libre...
C: How to perform strand-aware (RNA-Seq) mapping using STAR? by chahat_u • 140
Thanks a lot! I am interested in finding novel non-coding transcripts. In that case, is it still ...

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