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Subset long reads and optimal coverage
assembly long reads written 8 weeks ago by Picasa • 530 • updated 6 weeks ago by Biostar ♦♦ 20
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189
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Mapping (minimap2) nanopore reads to parent species to confirm hybridization
minimap2 parents hybrids long reads written 3 months ago by ricardoguerreiro2121 • 60
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135
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Multiple mapping with longreads - Get primary mapping
minimap2 long reads samtools mapping pacbio written 3 months ago by ricardoguerreiro2121 • 60 • updated 3 months ago by WouterDeCoster ♦ 44k
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5 follow
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Tutorial: Using the MinION MinKNOW software on Ubuntu 1604
tutorial minion long reads oxford nanopore written 11 months ago by colindaven • 2.3k
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Proportion of long-read sequencing out of all sequencing?
long reads written 5 months ago by liorglic • 310
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Scaffolding a genome with long reads.
assembly long reads pacbio written 8 months ago by Picasa • 530 • updated 8 months ago by lieven.sterck ♦ 7.9k
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398
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.bam format is not enough for mapped long reads
file formats alignment long reads written 9 months ago by anastasiia.satyr • 20 • updated 8 months ago by Biostar ♦♦ 20
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421
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Direct cDNA nanopore strandness discover - 2D approach
direct cdna long reads nanopore strand written 13 months ago by ruisergioluis • 30
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Job: Postdocs/Scientists: Long Reads, Epigenomes and Human Diseases
epigenomics chip-seq long reads rna-seq job written 14 months ago by fanggang • 90
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QC of Oxford Nanopore fastq files with NanoPlot
long reads tool oxford nanopore written 13 months ago by s.m.frampton • 10 • updated 13 months ago by WouterDeCoster ♦ 44k
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1
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Binning Tools for Long Reads/Contigs
long reads metagenomics contigs binning written 15 months ago by vijinim • 100
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5 follow
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Using Bandage to finish ambiguous long-read assembly?
unicycler assembly long reads bandage written 18 months ago by predeus • 1.4k • updated 17 months ago by Biostar ♦♦ 20
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Transcript assembly with nanopore long reads
assembly long reads transcriptome written 17 months ago by caggtaagtat • 1.0k • updated 17 months ago by colindaven • 2.3k
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Job: Postdoc & Scientist (New York City): Microbiome and Human Diseases
microbiome metagenomics metagenome long reads job written 22 months ago by fanggang • 90
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491
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Possible to call variants from PacBio reads from a mixed sample?
long reads pacbio snp written 20 months ago by nchuang • 210
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Raw Data from Oxford Nanopore Sequencing Technology
naopore ngs minion long reads rawdata written 2.1 years ago by midox • 260 • updated 2.1 years ago by h.mon ♦ 30k
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10 follow
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Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp
long reads tool pacbio oxford nanopore written 2.8 years ago by WouterDeCoster ♦ 44k
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5 follow
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RNA-seq long reads vs. transcripts
assembly long reads rna-seq written 2.4 years ago by tunl • 60
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Length distribution of PacBio RNA-seq
long reads rna-seq pacbio written 2.8 years ago by tunl • 60
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Question about downloading RNA-seq long reads and short reads for the same sample
long reads rna-seq pacbio written 2.8 years ago by tunl • 60 • updated 2.8 years ago by magdoll • 20
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Using long reads to find a combination of mutations
long reads nanopore snp variants written 3.0 years ago by eayasi • 0 • updated 3.0 years ago by colindaven • 2.3k
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Use kallisto with ONT (nanopore) cDNA long reads
long reads kallisto nanopore written 3.0 years ago by Nicolas Rosewick ♦ 8.8k
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9 follow
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Oxford Nanopore BWA MEM alignments
long reads bwa mem bwa oxford nanopore written 3.2 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 3.2 years ago by WouterDeCoster ♦ 44k
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Polishing Reads long or Short
polishing ngs short reads long reads polish written 3.4 years ago by midox • 260 • updated 3.4 years ago by Medhat ♦ 8.7k
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PacBio Technology Assemblers
assembly long reads pacbio written 5.7 years ago by midox • 260 • updated 3.6 years ago by Picasa • 530
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4
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6 follow
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Pacbio: extract fastq from h5 file based on quality filtering
assembly hgap long reads celera pacbio written 5.4 years ago by merodev • 140 • updated 3.7 years ago by mehmetgoktay1989 • 0
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2.2k
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Read length distribution of PacBio
reads ngs long reads pacbio sequencing written 3.8 years ago by midox • 260 • updated 3.8 years ago by Antonio R. Franco • 4.5k
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download PacBio long reads for E.coli
ngs sequencing long reads pacbio download written 3.8 years ago by midox • 260 • updated 3.8 years ago by Medhat ♦ 8.7k
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1
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Align long nanopore minion cDNA reads
alignment long reads nanopore written 4.9 years ago by Nicolas Rosewick ♦ 8.8k • updated 4.9 years ago by mark.ziemann • 1.2k
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HGAP assembly algorithm(help)
assembly long reads algorithms written 5.4 years ago by midox • 260
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