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samtools mpileup quality filtering for long read ONT data
samtools long reads ont written 21 days ago by regue.hadrien • 30
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How does long reads help in the repeated regions of the genome
bioinformatics short reads long reads ont illumina written 10 weeks ago by Ashi • 10 • updated 10 weeks ago by Jorge Amigo ♦ 12k
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Oxford nanopore sequnces with unequal base content?
forum sequence long reads nanopore sequencing written 12 weeks ago by alexanderbeatovic450 • 0
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Good Books/Resources to learn metagenomic analysis?
assembly metagenomics bacteria long reads nanopore written 3 months ago by jimpinney • 10 • updated 3 months ago by Mensur Dlakic • 7.1k
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Subset long reads and optimal coverage
assembly long reads written 6 months ago by Picasa • 570 • updated 6 months ago by Biostar ♦♦ 20
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Mapping (minimap2) nanopore reads to parent species to confirm hybridization
minimap2 parents hybrids long reads written 8 months ago by ricardoguerreiro2121 • 60
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Multiple mapping with longreads - Get primary mapping
minimap2 long reads samtools mapping pacbio written 8 months ago by ricardoguerreiro2121 • 60 • updated 8 months ago by WouterDeCoster ♦ 44k
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Tutorial: Using the MinION MinKNOW software on Ubuntu 1604
tutorial minion long reads oxford nanopore written 16 months ago by colindaven • 2.5k
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Proportion of long-read sequencing out of all sequencing?
long reads written 10 months ago by liorglic • 340
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Scaffolding a genome with long reads.
assembly long reads pacbio written 13 months ago by Picasa • 570 • updated 13 months ago by lieven.sterck ♦ 8.9k
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.bam format is not enough for mapped long reads
file formats alignment long reads written 14 months ago by anastasiia.satyr • 20 • updated 13 months ago by Biostar ♦♦ 20
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Direct cDNA nanopore strandness discover - 2D approach
direct cdna long reads nanopore strand written 18 months ago by ruisergioluis • 30
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Job: Postdocs/Scientists: Long Reads, Epigenomes and Human Diseases
epigenomics chip-seq long reads rna-seq job written 19 months ago by fanggang • 90
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QC of Oxford Nanopore fastq files with NanoPlot
long reads tool oxford nanopore written 18 months ago by s.m.frampton • 10 • updated 18 months ago by WouterDeCoster ♦ 44k
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Binning Tools for Long Reads/Contigs
long reads metagenomics contigs binning written 20 months ago by vijinim • 100
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Using Bandage to finish ambiguous long-read assembly?
unicycler assembly long reads bandage written 23 months ago by predeus • 1.4k • updated 22 months ago by Biostar ♦♦ 20
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Transcript assembly with nanopore long reads
assembly long reads transcriptome written 22 months ago by caggtaagtat • 1.3k • updated 22 months ago by colindaven • 2.5k
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Job: Postdoc & Scientist (New York City): Microbiome and Human Diseases
microbiome metagenomics metagenome long reads job written 2.3 years ago by fanggang • 90
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Possible to call variants from PacBio reads from a mixed sample?
long reads pacbio snp written 2.1 years ago by nchuang • 230
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Raw Data from Oxford Nanopore Sequencing Technology
naopore ngs minion long reads rawdata written 2.5 years ago by midox • 260 • updated 2.5 years ago by h.mon ♦ 31k
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Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp
long reads tool pacbio oxford nanopore written 3.2 years ago by WouterDeCoster ♦ 44k
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RNA-seq long reads vs. transcripts
assembly long reads rna-seq written 2.8 years ago by tunl • 60
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Length distribution of PacBio RNA-seq
long reads rna-seq pacbio written 3.2 years ago by tunl • 60
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Question about downloading RNA-seq long reads and short reads for the same sample
long reads rna-seq pacbio written 3.2 years ago by tunl • 60 • updated 3.2 years ago by magdoll • 20
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Using long reads to find a combination of mutations
long reads nanopore snp variants written 3.4 years ago by eayasi • 0 • updated 3.4 years ago by colindaven • 2.5k
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Use kallisto with ONT (nanopore) cDNA long reads
long reads kallisto nanopore written 3.4 years ago by Nicolas Rosewick ♦ 9.2k
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Oxford Nanopore BWA MEM alignments
long reads bwa mem bwa oxford nanopore written 3.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 3.6 years ago by WouterDeCoster ♦ 44k
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Polishing Reads long or Short
polishing ngs short reads long reads polish written 3.8 years ago by midox • 260 • updated 3.8 years ago by Medhat ♦ 8.8k
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PacBio Technology Assemblers
assembly long reads pacbio written 6.1 years ago by midox • 260 • updated 4.0 years ago by Picasa • 570
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6 follow
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Pacbio: extract fastq from h5 file based on quality filtering
assembly hgap long reads celera pacbio written 5.8 years ago by merodev • 140 • updated 4.1 years ago by mehmetgoktay1989 • 0
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