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<prev • 131 results • page 1 of 5 • next >
4
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0
answers
159
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0
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(Galaxy) MACS2 peaks threshold
macs2 chip-seq written 17 days ago by Morris_Chair • 140
2
votes
1
answer
119
views
1
answer
ATAC-seq peak calling
peak calling macs2 atac-seq written 20 days ago by mickey_95 • 0 • updated 20 days ago by ATpoint ♦ 24k
3
votes
1
answer
257
views
1
answer
Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 6 weeks ago by Researcher • 50 • updated 29 days ago by Rory Stark • 550
0
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0
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192
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0
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 5 weeks ago by Researcher • 50
2
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1
answer
136
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1
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MACS2 transcription start site analysis of .BAM files
macs2 chip-seq tss written 10 weeks ago by carlee.bettler • 10 • updated 10 weeks ago by ATpoint ♦ 24k
0
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1
answer
618
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1
answer
Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 19 months ago by erwan.scaon • 720 • updated 11 weeks ago by kieran.short • 0
1
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0
answers
312
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0
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 5 months ago by mmaqueda • 0 • updated 12 weeks ago by Biostar ♦♦ 20
1
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1
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1.4k
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1
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 2.5 years ago by 14134125465346445 • 3.5k • updated 3 months ago by Grinch • 70
3
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2
answers
263
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2
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Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 4 months ago by sikhtechai • 30 • updated 3 months ago by colin.kern • 500
2
votes
1
answer
144
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1
answer
MACS2 result of FDR
false discovery rate macs2 chip-seq q-value written 4 months ago by chaudharyc61 • 10 • updated 4 months ago by genomax ♦ 73k
0
votes
0
answers
245
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0
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macs2 callpeak results
callpeak macs2 chip-seq written 4 months ago by nehoralevi • 0 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
278
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1
answer
Why ranges of narrowPeak file and that of bed file are not identical
macs2 chip-seq sequencing written 4 months ago by Wang • 0 • updated 4 months ago by ATpoint ♦ 24k
0
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0
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188
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0
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MACS2 result analysis
peak calling macs2 chip-seq tool written 4 months ago by chaudharyc61 • 10 • updated 4 months ago by ATpoint ♦ 24k
2
votes
1
answer
172
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1
answer
Simulated background and peak smoothing in MACS2
background macs2 peakcalling written 4 months ago by 9606 • 320 • updated 4 months ago by ATpoint ♦ 24k
2
votes
1
answer
1.4k
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1
answer
ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 19 months ago by shawn.w.foley • 1.1k • updated 5 months ago by ATpoint ♦ 24k
5
votes
3
answers
3.2k
views
3
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macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 3.6 years ago by biocyberman • 800 • updated 5 months ago by Stefan.Kurtenbach • 0
0
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0
answers
261
views
0
answers
Different parameters for macs2 to call narrow marks and broad marks?
peak histone modification macs2 chip-seq written 5 months ago by ben.kunfang • 10
0
votes
0
answers
394
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0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 5 months ago by Ankit • 120
0
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0
answers
406
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0
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MACS2- struct.error: unpack requires a string argument of length 4
macs2 chip-seq written 5 months ago by 200dumplings • 0 • updated 5 months ago by ATpoint ♦ 24k
1
vote
1
answer
271
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1
answer
Correct approach to identify differential binding in samples (with no duplicates) from two subtypes of a cancer
macs2 chip-seq histone written 5 months ago by Researcher • 50 • updated 5 months ago by genomax ♦ 73k
0
votes
0
answers
224
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0
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how to deal with H3K4me3 and H3K4me1 overlap peaks?
peak histone modification macs2 chip-seq written 5 months ago by ben.kunfang • 10
1
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0
answers
252
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0
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Why the estimated fragment length result is different between SPP and macs2 predictd?
macs2 spp estimate fragment length written 5 months ago by ben.kunfang • 10
1
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0
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1.0k
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0
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MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 11 months ago by varunorama • 0 • updated 6 months ago by nanoide • 30
1
vote
1
answer
208
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1
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 6 months ago by nanoide • 30 • updated 6 months ago by jared.andrews07 • 3.4k
3
votes
1
answer
273
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1
answer
Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
macs2 chip-seq written 6 months ago by lhaiyan3 • 30 • updated 6 months ago by ATpoint ♦ 24k
4
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2
answers
498
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2
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help with MACS2 installation errors
hpc macs2 install pip written 7 months ago by g.sathish.k • 0
1
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0
answers
254
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0
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 7 months ago by star • 190
1
vote
0
answers
219
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0
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No called peaks from macse 2 and the alignment rate 90%
macs2 chip-seq written 7 months ago by sahhomaha • 0 • updated 7 months ago by h.mon ♦ 27k
9
votes
1
answer
1.2k
views
1
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MACS2 option for ATAC seq?
chip-seq peak-calling macs2 endcode atac-seq written 8 months ago by star • 190
7
votes
1
answer
615
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1
answer
ChipSeq using MACS2 - option to not call peaks with only few reads ?
macs2 chip-seq written 8 months ago by Bastien Hervé ♦ 4.4k
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