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<prev • 142 results • page 1 of 5 • next >
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bedGraphToBigWig file converter
macs2 sequence chip-seq bedgraphtobigwig written 8 weeks ago by iridha • 0 • updated 9 days ago by Biostar ♦♦ 20
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92
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how to call weak peak using macs2
macs2 chip-seq written 7 weeks ago by huangweiping.official • 0
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2
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165
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2
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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 3 months ago by sonark • 10
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89
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Why pileup values of MACS2 output have decimal values?
macs2 written 9 weeks ago by Sam • 0
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5 follow
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 3 months ago by Assa Yeroslaviz • 1.3k • updated 3 months ago by Rory Stark • 660
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128
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MACS2 --nolambda fold enrichment cutoff
macs2 atac-seq written 3 months ago by emre.cto • 0 • updated 3 months ago by ATpoint ♦ 35k
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180
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Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 3 months ago by fdewards • 10 • updated 3 months ago by kinalimeric • 20
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160
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Paired End RIP-seq analysis with MACS2 reasonable parameters?
macs peak caller macs2 rna-seq rip-seq written 4 months ago by ddierks91 • 0
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661
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ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 16 months ago by Susmita Mandal • 60 • updated 4 months ago by Ankit • 130
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1
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234
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1
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 5 months ago by ahmed.saadawi • 0 • updated 4 months ago by Biostar ♦♦ 20
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3
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3
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Problem with MACS2 Install?
python macs2 chip-seq written 4.8 years ago by priyasshah • 0 • updated 5 months ago by Shicheng Guo • 8.2k
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2
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205
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2
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Chip-Seq macs2 peak calling
ngs macs2 chip-seq written 7 months ago by Molinia • 0 • updated 7 months ago by jared.andrews07 ♦ 5.5k
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147
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Chip exo data analysis
chip exo macs2 gem written 7 months ago by amitpande74 • 0
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417
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(Galaxy) MACS2 peaks threshold
macs2 chip-seq written 8 months ago by Morris_Chair • 180
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1
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595
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1
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ATAC-seq peak calling
peak calling macs2 atac-seq written 8 months ago by mickey_95 • 10 • updated 8 months ago by ATpoint ♦ 35k
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1
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622
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 9 months ago by Researcher • 50 • updated 8 months ago by Rory Stark • 660
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341
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 8 months ago by Researcher • 50
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1
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1
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MACS2 transcription start site analysis of .BAM files
macs2 chip-seq tss written 10 months ago by carlee.bettler • 10 • updated 10 months ago by ATpoint ♦ 35k
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1
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773
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.2 years ago by erwan.scaon • 790 • updated 10 months ago by kieran.short • 0
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 12 months ago by mmaqueda • 0 • updated 10 months ago by Biostar ♦♦ 20
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 3.1 years ago by 14134125465346445 • 3.5k • updated 10 months ago by Grinch • 80
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2
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611
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Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 11 months ago by bioinfouser • 70 • updated 11 months ago by colin.kern • 900
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404
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1
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MACS2 result of FDR
false discovery rate macs2 chip-seq q-value written 11 months ago by chaudharyc61 • 20 • updated 11 months ago by genomax ♦ 84k
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559
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macs2 callpeak results
callpeak macs2 chip-seq written 12 months ago by nehoralevi • 0 • updated 11 months ago by Biostar ♦♦ 20
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554
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1
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Why ranges of narrowPeak file and that of bed file are not identical
macs2 chip-seq sequencing written 12 months ago by Wang • 10 • updated 12 months ago by ATpoint ♦ 35k
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481
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MACS2 result analysis
peak calling macs2 chip-seq tool written 12 months ago by chaudharyc61 • 20 • updated 12 months ago by ATpoint ♦ 35k
2
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1
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369
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1
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Simulated background and peak smoothing in MACS2
background macs2 peakcalling written 12 months ago by 9606 • 320 • updated 12 months ago by ATpoint ♦ 35k
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ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 2.2 years ago by shawn.w.foley • 1.2k • updated 12 months ago by ATpoint ♦ 35k
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3
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macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 4.2 years ago by biocyberman • 810 • updated 12 months ago by Stefan.Kurtenbach • 50
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562
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Different parameters for macs2 to call narrow marks and broad marks?
peak histone modification macs2 chip-seq written 12 months ago by ben.kunfang • 10
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