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<prev • 149 results • page 1 of 5 • next >
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How can I filter/extract called peaks based on their peak height?
peak calling peak height macs2 atac-seq written 29 days ago by jiekwo1 • 0
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99
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Peak calling for CUT&Tag data
cut&amp;tag seacr macs2 peak calling written 5 weeks ago by xmLiu • 0
2
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0
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124
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0
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Providing R1,R2 to macs2
macs2 chip-seq written 5 weeks ago by Sam • 50
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0
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152
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Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad peaks?
cut&amp;run chipseq macs2 chromhmm cutandrun written 11 weeks ago by Melinda • 0
3
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1
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1.0k
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5 follow
1
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ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 22 months ago by Susmita Mandal • 70 • updated 12 weeks ago by liang795 • 0
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128
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Effective genome size for MACS2 in allele specific Chip-Seq
chip-seq macs2 genome size written 12 weeks ago by liang795 • 0
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1.3k
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Discrepancy with MACS2.0 and MACS2.1 broad peaks
macs2 chip-seq macs2.1 written 5.0 years ago by ivivek_ngs • 5.0k • updated 12 weeks ago by Biostar ♦♦ 20
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186
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Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
peak calling macs2 chip-seq homer written 4 months ago by science_lizard • 0
4
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1
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247
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1
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What could be a reason for peaks called via Macs2 not appearing as real peaks in IGV?
macs2 igv written 5 months ago by Sam • 50 • updated 5 months ago by ATpoint ♦ 41k
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354
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bedGraphToBigWig file converter
macs2 sequence chip-seq bedgraphtobigwig written 7 months ago by iridha • 0 • updated 6 months ago by Biostar ♦♦ 20
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188
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how to call weak peak using macs2
macs2 chip-seq written 7 months ago by huangweiping.official • 0
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2
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296
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2
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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 9 months ago by sonark • 10
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203
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Why pileup values of MACS2 output have decimal values?
macs2 written 8 months ago by Sam • 50
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1
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353
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5 follow
1
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 8 months ago by Assa Yeroslaviz • 1.4k • updated 8 months ago by Rory Stark • 880
2
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1
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340
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1
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MACS2 --nolambda fold enrichment cutoff
macs2 atac-seq written 9 months ago by emre.cto • 0 • updated 9 months ago by ATpoint ♦ 41k
1
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0
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262
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0
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Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 9 months ago by fdewards • 10 • updated 9 months ago by kinalimeric • 20
0
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0
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295
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0
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Paired End RIP-seq analysis with MACS2 reasonable parameters?
macs peak caller macs2 rna-seq rip-seq written 10 months ago by ddierks91 • 0
0
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1
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396
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1
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 10 months ago by ahmed.saadawi • 0 • updated 10 months ago by Biostar ♦♦ 20
4
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3
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5.6k
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3
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Problem with MACS2 Install?
python macs2 chip-seq written 5.3 years ago by priyasshah • 0 • updated 11 months ago by Shicheng Guo • 8.5k
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2
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274
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2
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Chip-Seq macs2 peak calling
ngs macs2 chip-seq written 12 months ago by Molinia • 10 • updated 12 months ago by jared.andrews07 ♦ 7.9k
0
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0
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229
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Chip exo data analysis
chip exo macs2 gem written 13 months ago by amitpande74 • 0
4
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0
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615
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(Galaxy) MACS2 peaks threshold
macs2 chip-seq written 14 months ago by Morris_Chair • 220
2
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1
answer
925
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1
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ATAC-seq peak calling
peak calling macs2 atac-seq written 14 months ago by mickey_95 • 10 • updated 14 months ago by ATpoint ♦ 41k
3
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1
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962
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 14 months ago by Researcher • 60 • updated 14 months ago by Rory Stark • 880
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425
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 14 months ago by Researcher • 60
2
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1
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383
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1
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MACS2 transcription start site analysis of .BAM files
macs2 chip-seq tss written 15 months ago by carlee.bettler • 10 • updated 15 months ago by ATpoint ♦ 41k
0
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1
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898
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.7 years ago by erwan.scaon • 810 • updated 16 months ago by kieran.short • 0
1
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 18 months ago by mmaqueda • 0 • updated 16 months ago by Biostar ♦♦ 20
1
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1
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1
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 3.6 years ago by 14134125465346445 • 3.5k • updated 16 months ago by Grinch • 90
3
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2
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916
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2
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Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 17 months ago by bioinfouser • 70 • updated 17 months ago by colin.kern • 930
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