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<prev • 93 results • page 1 of 4 • next >
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Inconsistency between number of reads in Samtools flagstat and Macs2 total tags.
macs2 peak calling atac chip-seq written 2 days ago by ahmadammarmalik • 0 • updated 2 days ago by genomax ♦ 54k
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80
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Meaning of mfold upper limit?
mfold macs2 chip-seq written 10 days ago by mbk0asis • 360
1
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94
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What parameter values to change in peak calling with MACS2 when calculating IDR afterwards?
macs2 idr chip-seq written 17 days ago by salamandra • 160
0
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1
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501
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1
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file "_peaks.bed" on macs2
macs2 chip-seq peakcall written 14 months ago by Brice222 • 30 • updated 29 days ago by Biostar ♦♦ 20
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2
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217
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5 follow
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How can I look at find 'open chromatin' from ATAC-seq data using MACS2
macs2 atac-seq written 6 weeks ago by a.rex • 150 • updated 6 weeks ago by ATpoint ♦ 6.5k
1
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1
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137
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1
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how i get get same length of peaks by macs2
macs2 chip-seq written 6 weeks ago by mikysyc2016 • 10
2
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2
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991
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5 follow
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ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 6 months ago by stephenz • 0 • updated 6 weeks ago by Alternative • 210
2
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4
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1.7k
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4
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 2.6 years ago by lm687 • 50 • updated 7 weeks ago by oriolebaltimore • 60
0
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1
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165
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1
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Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 8 weeks ago by nanoide • 10 • updated 8 weeks ago by b.nota ♦ 4.6k
8
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2
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282
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8 follow
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 10 weeks ago by star • 60 • updated 10 weeks ago by Ram ♦ 17k
1
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3
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1.5k
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5 follow
3
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MACS2 with multiple replicates
macs2 chip-seq written 16 months ago by ariel.balter • 130 • updated 10 weeks ago by Hmd • 10
0
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3
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278
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3
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MACS2 output (fold enrichment)
macs chipseq macs2 written 11 weeks ago by samantha_jeschonek • 50 • updated 11 weeks ago by roma • 110
1
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0
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154
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nomarlizing sequencing depth when use macs2 bdgbroadpeaks
macs2 chip-seq sequencing written 3 months ago by langya • 20
0
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1
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249
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1
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Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 3 months ago by Bioinformatist Newbie • 230 • updated 3 months ago by igor ♦ 6.5k
1
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1
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248
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1
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Problem with MACS2 results
ngs macs2 written 3 months ago by eilluecaf • 0 • updated 3 months ago by Chris Fields • 1.9k
0
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1
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567
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1
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Difference in number of peaks called
macs2 chip-seq peakcalling written 14 months ago by anu014 • 150 • updated 4 months ago by colindaven • 770
0
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1
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267
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 5 months ago by erwan.scaon • 550 • updated 4 months ago by Rory Stark • 460
1
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0
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176
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0
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MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 4 months ago by takamichael • 0
0
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0
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339
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0
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ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 5 months ago by shawn.w.foley • 90
3
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1
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549
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1
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If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
duplicates macs2 chip-seq written 5 months ago by salamandra • 160 • updated 5 months ago by Biostar ♦♦ 20
0
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274
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1
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using MACS2 with hg38
macs2 hg38 written 5 months ago by varsha619 • 70 • updated 5 months ago by igor ♦ 6.5k
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339
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MACS2 MODEL VS NO MODEL FOR CHIRP SEQ
chirp-seq macs2 chip-seq peakcalling written 5 months ago by prathyushakonda • 0
0
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378
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ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools macs2 chip-seq computematrix rna-seq written 5 months ago by salamandra • 160
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238
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MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
macs2 chip-seq written 5 months ago by salamandra • 160
5
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2
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438
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2
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Files to compare ChIP vs Input on genome browser: after alignment or peak calling?
genome browser macs2 chip-seq written 5 months ago by salamandra • 160 • updated 5 months ago by Friederike • 2.0k
5
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1
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508
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1
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Biological significance of Fold_enrichment in macs2
macs2 written 8 months ago by Rose • 0 • updated 8 months ago by Ian ♦ 5.2k
0
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0
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270
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0
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How is the fold_enrichment in macs2 calculated?
macs2 written 8 months ago by Rose • 0
3
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0
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832
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5 follow
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How much does effective genome size affect the macs2 output?
chip-seq macs2 effective genome size written 12 months ago by urjaswita • 70 • updated 8 months ago by Biostar ♦♦ 20
0
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321
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BED columns used by MACS2
bed macs2 written 10 months ago by cpak1981 • 100
2
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1
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588
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1
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Narrow & Broad peaks from 'macs2 bdgdiff'
macs2 next-gen chip-seq peakcalling sequencing written 11 months ago by anu014 • 150 • updated 11 months ago by jared.andrews07 • 870
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