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<prev • 134 results • page 1 of 5 • next >
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ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 12 months ago by Susmita Mandal • 60 • updated 15 hours ago by Ankit • 120
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1
answer
114
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1
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 15 days ago by ahmed.saadawi • 0 • updated 1 day ago by Biostar ♦♦ 20
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3
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4.4k
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3
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Problem with MACS2 Install?
python macs2 chip-seq written 4.4 years ago by priyasshah • 0 • updated 22 days ago by Shicheng Guo • 8.0k
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2
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141
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2
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Chip-Seq macs2 peak calling
ngs macs2 chip-seq written 10 weeks ago by Molinia • 0 • updated 10 weeks ago by jared.andrews07 • 4.3k
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76
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Chip exo data analysis
chip exo macs2 gem written 11 weeks ago by amitpande74 • 0
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0
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274
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0
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(Galaxy) MACS2 peaks threshold
macs2 chip-seq written 3 months ago by Morris_Chair • 170
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1
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322
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1
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ATAC-seq peak calling
peak calling macs2 atac-seq written 3 months ago by mickey_95 • 10 • updated 3 months ago by ATpoint ♦ 28k
3
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1
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380
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 4 months ago by Researcher • 50 • updated 4 months ago by Rory Stark • 550
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260
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0
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 4 months ago by Researcher • 50
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1
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199
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1
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MACS2 transcription start site analysis of .BAM files
macs2 chip-seq tss written 5 months ago by carlee.bettler • 10 • updated 5 months ago by ATpoint ♦ 28k
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1
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678
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 22 months ago by erwan.scaon • 730 • updated 5 months ago by kieran.short • 0
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427
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 8 months ago by mmaqueda • 0 • updated 5 months ago by Biostar ♦♦ 20
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1
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 2.7 years ago by 14134125465346445 • 3.5k • updated 6 months ago by Grinch • 70
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2
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404
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2
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Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 7 months ago by sikhtechai • 30 • updated 6 months ago by colin.kern • 770
2
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1
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208
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1
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MACS2 result of FDR
false discovery rate macs2 chip-seq q-value written 7 months ago by chaudharyc61 • 20 • updated 7 months ago by genomax ♦ 76k
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0
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383
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macs2 callpeak results
callpeak macs2 chip-seq written 7 months ago by nehoralevi • 0 • updated 7 months ago by Biostar ♦♦ 20
1
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1
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390
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1
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Why ranges of narrowPeak file and that of bed file are not identical
macs2 chip-seq sequencing written 7 months ago by Wang • 10 • updated 7 months ago by ATpoint ♦ 28k
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0
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291
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MACS2 result analysis
peak calling macs2 chip-seq tool written 7 months ago by chaudharyc61 • 20 • updated 7 months ago by ATpoint ♦ 28k
2
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1
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239
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1
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Simulated background and peak smoothing in MACS2
background macs2 peakcalling written 7 months ago by 9606 • 320 • updated 7 months ago by ATpoint ♦ 28k
3
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1
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1.6k
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1
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ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 22 months ago by shawn.w.foley • 1.1k • updated 8 months ago by ATpoint ♦ 28k
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3
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3.4k
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3
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macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 3.9 years ago by biocyberman • 810 • updated 8 months ago by Stefan.Kurtenbach • 50
0
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0
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384
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0
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Different parameters for macs2 to call narrow marks and broad marks?
peak histone modification macs2 chip-seq written 8 months ago by ben.kunfang • 10
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0
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500
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MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 8 months ago by Ankit • 120
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585
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MACS2- struct.error: unpack requires a string argument of length 4
macs2 chip-seq written 8 months ago by 200dumplings • 10 • updated 8 months ago by ATpoint ♦ 28k
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1
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331
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1
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Correct approach to identify differential binding in samples (with no duplicates) from two subtypes of a cancer
macs2 chip-seq histone written 8 months ago by Researcher • 50 • updated 8 months ago by genomax ♦ 76k
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0
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277
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0
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how to deal with H3K4me3 and H3K4me1 overlap peaks?
peak histone modification macs2 chip-seq written 8 months ago by ben.kunfang • 10
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Why the estimated fragment length result is different between SPP and macs2 predictd?
macs2 spp estimate fragment length written 8 months ago by ben.kunfang • 10
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7 follow
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MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 14 months ago by varunorama • 30 • updated 9 months ago by nanoide • 40
1
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1
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256
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1
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Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 9 months ago by nanoide • 40 • updated 9 months ago by jared.andrews07 • 4.3k
3
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1
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350
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1
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Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
macs2 chip-seq written 9 months ago by lhaiyan3 • 30 • updated 9 months ago by ATpoint ♦ 28k
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