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<prev • 126 results • page 1 of 5 • next >
2
votes
1
answer
48
views
1
answer
MACS2 result of FDR
false discovery rate macs2 chip-seq q-value written 4 days ago by chaudharyc61 • 0 • updated 4 days ago by genomax ♦ 68k
0
votes
0
answers
106
views
0
answers
macs2 callpeak results
callpeak macs2 chip-seq written 13 days ago by nehoralevi • 0 • updated 6 days ago by Biostar ♦♦ 20
3
votes
1
answer
86
views
1
answer
Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
chip-seq macs2 chromhmm written 12 days ago by sikhtechai • 30 • updated 12 days ago by Ar • 860
1
vote
1
answer
144
views
1
answer
Why ranges of narrowPeak file and that of bed file are not identical
macs2 chip-seq sequencing written 23 days ago by Wang • 0 • updated 22 days ago by ATpoint ♦ 18k
0
votes
0
answers
94
views
0
answers
MACS2 result analysis
peak calling macs2 chip-seq tool written 23 days ago by chaudharyc61 • 0 • updated 23 days ago by ATpoint ♦ 18k
2
votes
1
answer
73
views
1
answer
Simulated background and peak smoothing in MACS2
background macs2 peakcalling written 25 days ago by 9606 • 320 • updated 25 days ago by ATpoint ♦ 18k
2
votes
1
answer
1.1k
views
1
answer
ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 15 months ago by shawn.w.foley • 750 • updated 4 weeks ago by ATpoint ♦ 18k
1
vote
0
answers
137
views
0
answers
Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 5 weeks ago by mmaqueda • 0 • updated 5 weeks ago by ATpoint ♦ 18k
5
votes
3
answers
2.9k
views
3
answers
macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 3.3 years ago by biocyberman • 770 • updated 5 weeks ago by Stefan.Kurtenbach • 0
0
votes
0
answers
106
views
0
answers
Different parameters for macs2 to call narrow marks and broad marks?
peak histone modification macs2 chip-seq written 5 weeks ago by ben.kunfang • 10
0
votes
0
answers
271
views
0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 6 weeks ago by Ankit • 100
0
votes
0
answers
183
views
0
answers
MACS2- struct.error: unpack requires a string argument of length 4
macs2 chip-seq written 6 weeks ago by 200dumplings • 0 • updated 6 weeks ago by ATpoint ♦ 18k
1
vote
1
answer
191
views
1
answer
Correct approach to identify differential binding in samples (with no duplicates) from two subtypes of a cancer
macs2 chip-seq histone written 7 weeks ago by Researcher • 30 • updated 7 weeks ago by genomax ♦ 68k
0
votes
0
answers
142
views
0
answers
how to deal with H3K4me3 and H3K4me1 overlap peaks?
peak histone modification macs2 chip-seq written 7 weeks ago by ben.kunfang • 10
1
vote
0
answers
148
views
0
answers
Why the estimated fragment length result is different between SPP and macs2 predictd?
macs2 spp estimate fragment length written 7 weeks ago by ben.kunfang • 10
1
vote
0
answers
657
views
0
answers
MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 7 months ago by varunorama • 0 • updated 10 weeks ago by nanoide • 30
1
vote
1
answer
113
views
1
answer
Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
macs2 homer peaks chip-seq annotation written 10 weeks ago by nanoide • 30 • updated 10 weeks ago by jared.andrews07 • 2.5k
3
votes
1
answer
174
views
1
answer
Which parameter can be used to set up cutoff not to call peaks <150bp for the macs2 broad peak calling
macs2 chip-seq written 12 weeks ago by lhaiyan3 • 30 • updated 11 weeks ago by ATpoint ♦ 18k
4
votes
2
answers
258
views
2
answers
help with MACS2 installation errors
hpc macs2 install pip written 3 months ago by g.sathish.k • 0
1
vote
0
answers
168
views
0
answers
extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 3 months ago by star • 150
1
vote
0
answers
159
views
0
answers
No called peaks from macse 2 and the alignment rate 90%
macs2 chip-seq written 3 months ago by sahhomaha • 0 • updated 3 months ago by h.mon ♦ 26k
8
votes
1
answer
695
views
1
answer
MACS2 option for ATAC seq?
chip-seq peak-calling macs2 endcode atac-seq written 4 months ago by star • 150
7
votes
1
answer
440
views
1
answer
ChipSeq using MACS2 - option to not call peaks with only few reads ?
macs2 chip-seq written 4 months ago by Bastien Hervé ♦ 4.3k
5
votes
1
answer
214
views
1
answer
shall we consider -- keep-dup all when we removed duplication?
duplicate macs2 peak-calling chip-seq written 4 months ago by star • 150 • updated 4 months ago by benformatics • 890
0
votes
1
answer
436
views
1
answer
Normalizing ChIP-seq and ATAC-seq data?
normalization macs2 chip-seq alignment written 4 months ago by star • 150
3
votes
2
answers
1.1k
views
2
answers
Narrow & Broad peaks from 'macs2 bdgdiff'
macs2 next-gen chip-seq peakcalling sequencing written 21 months ago by anu014 • 160 • updated 4 months ago by MMa • 270
7
votes
1
answer
381
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 4 months ago by Gary • 450 • updated 4 months ago by geek_y ♦ 9.7k
1
vote
1
answer
282
views
1
answer
ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 5 months ago by Susmita Mandal • 40 • updated 5 months ago by Devon Ryan ♦ 90k
4
votes
2
answers
540
views
2
answers
ChIP-Seq experiment, MACS2 bdgpeakcall 0 fold-change, pvalue and qvalue
macs2 chip-seq written 6 months ago by Bastien Hervé ♦ 4.3k
1
vote
1
answer
905
views
1
answer
Problem with MACS2 results
ngs macs2 written 14 months ago by eilluecaf • 0 • updated 7 months ago by Biostar ♦♦ 20
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