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<prev • 151 results • page 1 of 6 • next >
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bigWig tracks inconsistent with MACS2 callpeak
macs2 chip-seq written 13 days ago by lida • 10
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1
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281
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1
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Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad peaks?
cut&amp;run chipseq macs2 chromhmm cutandrun written 6 months ago by Melinda • 0 • updated 4 weeks ago by sarah.hazell.pickering • 0
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223
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No coverage in macs2 peak summit!
macs2 peaks written 3 months ago by blur • 180 • updated 7 weeks ago by Biostar ♦♦ 20
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196
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How can I filter/extract called peaks based on their peak height?
peak calling peak height macs2 atac-seq written 4 months ago by jiekwo1 • 0
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238
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Peak calling for CUT&Tag data
cut&amp;tag seacr macs2 peak calling written 4 months ago by xmLiu • 0
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198
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Providing R1,R2 to macs2
macs2 chip-seq written 4 months ago by Sam • 120
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1
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5 follow
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ChIP-Seq Analysis allele specific way?
vcf chip-seq ngs macs2 ase written 2.1 years ago by Susmita Mandal • 70 • updated 6 months ago by liang795 • 0
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203
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Effective genome size for MACS2 in allele specific Chip-Seq
chip-seq macs2 genome size written 6 months ago by liang795 • 0
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1.3k
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Discrepancy with MACS2.0 and MACS2.1 broad peaks
macs2 chip-seq macs2.1 written 5.3 years ago by ivivek_ngs • 5.1k • updated 6 months ago by Biostar ♦♦ 20
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286
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Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
peak calling macs2 chip-seq homer written 7 months ago by science_lizard • 0
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1
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401
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What could be a reason for peaks called via Macs2 not appearing as real peaks in IGV?
macs2 igv written 9 months ago by Sam • 120 • updated 9 months ago by ATpoint ♦ 46k
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631
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bedGraphToBigWig file converter
macs2 sequence chip-seq bedgraphtobigwig written 11 months ago by iridha • 0 • updated 9 months ago by Biostar ♦♦ 20
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265
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how to call weak peak using macs2
macs2 chip-seq written 10 months ago by huangweiping.official • 0
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2
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390
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2
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GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
macs2 chip-seq gsea written 12 months ago by sonark • 10
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287
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Why pileup values of MACS2 output have decimal values?
macs2 written 11 months ago by Sam • 120
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484
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5 follow
1
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 12 months ago by Assa Yeroslaviz • 1.4k • updated 12 months ago by Rory Stark • 920
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1
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502
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1
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MACS2 --nolambda fold enrichment cutoff
macs2 atac-seq written 12 months ago by emre.cto • 0 • updated 12 months ago by ATpoint ♦ 46k
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312
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Macs2 output shows only single basepair peak instead of a section of DNA
macs callpeak macs2 chip-seq written 13 months ago by fdewards • 10 • updated 12 months ago by kinalimeric • 30
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448
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Paired End RIP-seq analysis with MACS2 reasonable parameters?
macs peak caller macs2 rna-seq rip-seq written 13 months ago by ddierks91 • 0
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1
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492
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1
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 14 months ago by ahmed.saadawi • 0 • updated 13 months ago by Biostar ♦♦ 20
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3
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6.0k
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3
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Problem with MACS2 Install?
python macs2 chip-seq written 5.5 years ago by priyasshah • 0 • updated 14 months ago by Shicheng Guo • 8.6k
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2
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321
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2
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Chip-Seq macs2 peak calling
ngs macs2 chip-seq written 16 months ago by Molinia • 10 • updated 16 months ago by jared.andrews07 ♦ 8.7k
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291
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0
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Chip exo data analysis
chip exo macs2 gem written 16 months ago by amitpande74 • 20
4
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760
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(Galaxy) MACS2 peaks threshold
macs2 chip-seq written 17 months ago by Morris_Chair • 230
2
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1
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1.1k
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1
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ATAC-seq peak calling
peak calling macs2 atac-seq written 17 months ago by mickey_95 • 30 • updated 17 months ago by ATpoint ♦ 46k
3
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1
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1.3k
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 18 months ago by Researcher • 70 • updated 17 months ago by Rory Stark • 920
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490
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 18 months ago by Researcher • 70
2
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1
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452
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1
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MACS2 transcription start site analysis of .BAM files
macs2 chip-seq tss written 19 months ago by carlee.bettler • 10 • updated 19 months ago by ATpoint ♦ 46k
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961
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 3.0 years ago by erwan.scaon • 810 • updated 19 months ago by kieran.short • 0
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1.3k
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 22 months ago by mmaqueda • 0 • updated 19 months ago by Biostar ♦♦ 20
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