Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: macs2 • reset
or   Classic search
<prev • 101 results • page 1 of 4 • next >
1
vote
1
answer
547
views
1
answer
Problem with MACS2 results
ngs macs2 written 7 months ago by eilluecaf • 0 • updated 4 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
240
views
0
answers
Macs2: predicted fragment length less than 2*tag length
macs2 chip-seq tagsize written 3 months ago by langya • 20 • updated 6 weeks ago by Biostar ♦♦ 20
7
votes
3
answers
224
views
7 follow
3
answers
macs2 conda installation problem
software error osx macs2 python version written 6 weeks ago by jcs92 • 0 • updated 6 weeks ago by h.mon ♦ 21k
1
vote
0
answers
152
views
0
answers
MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 6 weeks ago by varunorama • 0
0
votes
1
answer
588
views
1
answer
Crazy log-likelihood values from MACS2 `bdgdiff`.
chipseq macs2 differential binding analysis written 20 months ago by ariel.balter • 130 • updated 6 weeks ago by yinyeya • 0
4
votes
1
answer
460
views
5 follow
1
answer
Can be merged biological replicates?
chip-seq macs2 peak-calling atac-seq rna-seq written 3 months ago by star • 70 • updated 11 weeks ago by ZZzzzzhong • 150
0
votes
0
answers
167
views
0
answers
When using MACS2 with -f BAM, it is possible to have a shift other than 0?
macs macs2 written 3 months ago by Lucy • 0 • updated 11 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
198
views
1
answer
Determine peak summits after IDR analysis
peak summits macs2 idr written 3 months ago by Lucy • 0 • updated 3 months ago by Alex Reynolds ♦ 26k
3
votes
1
answer
226
views
1
answer
MACS2: Albeit outdir definition, my output goes to folder of input
macs2 chip-seq written 3 months ago by gdeniz • 0
0
votes
1
answer
234
views
1
answer
shift direction in ATAC/DNase data?
macs2 chip-seq atac-seq dnase-seq written 3 months ago by star • 70
0
votes
1
answer
296
views
1
answer
Inconsistency between number of reads in Samtools flagstat and Macs2 total tags.
macs2 peak calling atac chip-seq written 4 months ago by ahmadammarmalik • 0 • updated 4 months ago by genomax ♦ 59k
0
votes
0
answers
170
views
0
answers
Meaning of mfold upper limit?
mfold macs2 chip-seq written 4 months ago by mbk0asis • 390
1
vote
0
answers
186
views
0
answers
What parameter values to change in peak calling with MACS2 when calculating IDR afterwards?
macs2 idr chip-seq written 4 months ago by salamandra • 180
0
votes
1
answer
582
views
1
answer
file "_peaks.bed" on macs2
macs2 chip-seq peakcall written 18 months ago by Brice222 • 30 • updated 4 months ago by Biostar ♦♦ 20
6
votes
2
answers
637
views
5 follow
2
answers
How can I look at find 'open chromatin' from ATAC-seq data using MACS2
macs2 atac-seq written 5 months ago by a.rex • 170 • updated 5 months ago by ATpoint ♦ 11k
1
vote
1
answer
232
views
1
answer
how i get get same length of peaks by macs2
macs2 chip-seq written 5 months ago by mikysyc2016 • 20
3
votes
2
answers
1.5k
views
7 follow
2
answers
ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 10 months ago by stephenz • 10 • updated 5 months ago by Alternative • 220
2
votes
4
answers
2.0k
views
4
answers
Empty output from MACS2 when using control
peak calling macs2 chip-seq written 2.9 years ago by lm687 • 50 • updated 5 months ago by oriolebaltimore • 60
0
votes
1
answer
361
views
1
answer
Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 5 months ago by nanoide • 10 • updated 5 months ago by b.nota ♦ 5.4k
8
votes
2
answers
654
views
8 follow
2
answers
Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 6 months ago by star • 70 • updated 6 months ago by RamRS ♦ 19k
1
vote
3
answers
2.1k
views
5 follow
3
answers
MACS2 with multiple replicates
macs2 chip-seq written 20 months ago by ariel.balter • 130 • updated 6 months ago by Hmd • 10
0
votes
3
answers
624
views
3
answers
MACS2 output (fold enrichment)
macs chipseq macs2 written 6 months ago by samantha_jeschonek • 50 • updated 6 months ago by roma • 110
1
vote
0
answers
242
views
0
answers
nomarlizing sequencing depth when use macs2 bdgbroadpeaks
macs2 chip-seq sequencing written 7 months ago by langya • 20
0
votes
1
answer
497
views
1
answer
Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 7 months ago by Bioinformatist Newbie • 230 • updated 7 months ago by igor ♦ 7.1k
0
votes
1
answer
693
views
1
answer
Difference in number of peaks called
macs2 chip-seq peakcalling written 17 months ago by anu014 • 160 • updated 7 months ago by colindaven • 840
0
votes
1
answer
369
views
1
answer
Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 8 months ago by erwan.scaon • 590 • updated 8 months ago by Rory Stark • 480
1
vote
0
answers
289
views
0
answers
MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 8 months ago by takamichael • 0
0
votes
0
answers
635
views
0
answers
ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 9 months ago by shawn.w.foley • 140
5
votes
1
answer
897
views
1
answer
If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
duplicates macs2 chip-seq written 9 months ago by salamandra • 180 • updated 9 months ago by Biostar ♦♦ 20
0
votes
1
answer
427
views
1
answer
using MACS2 with hg38
macs2 hg38 written 9 months ago by varsha619 • 70 • updated 9 months ago by igor ♦ 7.1k
<prev • 101 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 1 minute ago
  • United States, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 592 users visited in the last hour