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<prev • 88 results • page 1 of 3 • next >
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Doubt using HOMER annotatePeaks.pl
homer macs2 chip-seq written 3 days ago by josruirod • 10 • updated 3 days ago by b.nota ♦ 4.0k
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2
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114
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7 follow
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Peak calling using macs2?
macs2 chip-seq peaks peak-calling written 16 days ago by star • 60 • updated 16 days ago by Ram ♦ 15k
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3
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5 follow
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MACS2 with multiple replicates
macs2 chip-seq written 14 months ago by ariel.balter • 130 • updated 19 days ago by Hmd • 10
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3
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177
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3
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MACS2 output (fold enrichment)
macs chipseq macs2 written 23 days ago by samantha_jeschonek • 50 • updated 22 days ago by roma • 110
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99
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nomarlizing sequencing depth when use macs2 bdgbroadpeaks
macs2 chip-seq sequencing written 5 weeks ago by langya • 20
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1
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183
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1
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Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 7 weeks ago by Bioinformatist Newbie • 230 • updated 6 weeks ago by igor ♦ 6.2k
1
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1
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156
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1
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Problem with MACS2 results
ngs macs2 written 7 weeks ago by eilluecaf • 0 • updated 7 weeks ago by Chris Fields • 1.9k
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1
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515
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1
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Difference in number of peaks called
macs2 chip-seq peakcalling written 12 months ago by anu014 • 150 • updated 9 weeks ago by colindaven • 700
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1
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209
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 3 months ago by erwan.scaon • 540 • updated 10 weeks ago by Rory Stark • 460
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134
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0
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MACS2 Total Reads Within a Peak?
homer macs2 chip-seq written 11 weeks ago by takamichael • 0
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0
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221
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0
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ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
bdgdiff macs2 chip-seq written 3 months ago by shawn.w.foley • 90
3
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1
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405
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1
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If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
duplicates macs2 chip-seq written 3 months ago by salamandra • 130 • updated 3 months ago by Biostar ♦♦ 20
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208
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using MACS2 with hg38
macs2 hg38 written 3 months ago by varsha619 • 70 • updated 3 months ago by igor ♦ 6.2k
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237
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MACS2 MODEL VS NO MODEL FOR CHIRP SEQ
chirp-seq macs2 chip-seq peakcalling written 3 months ago by prathyushakonda • 0
1
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1
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5 follow
1
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ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 4 months ago by stephenz • 0 • updated 3 months ago by firatuyulur • 190
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258
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ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools macs2 chip-seq computematrix rna-seq written 3 months ago by salamandra • 130
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196
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MACS2: What is in 4th column of treat_pvalue.bdg/treat_qvalue.bdg files?
macs2 chip-seq written 3 months ago by salamandra • 130
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2
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338
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2
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Files to compare ChIP vs Input on genome browser: after alignment or peak calling?
genome browser macs2 chip-seq written 3 months ago by salamandra • 130 • updated 3 months ago by Friederike • 1.8k
5
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1
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398
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1
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Biological significance of Fold_enrichment in macs2
macs2 written 6 months ago by Rose • 0 • updated 6 months ago by Ian ♦ 5.2k
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241
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0
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How is the fold_enrichment in macs2 calculated?
macs2 written 6 months ago by Rose • 0
3
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733
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5 follow
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How much does effective genome size affect the macs2 output?
chip-seq macs2 effective genome size written 10 months ago by urjaswita • 70 • updated 6 months ago by Biostar ♦♦ 20
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283
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BED columns used by MACS2
bed macs2 written 8 months ago by cpak1981 • 100
2
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1
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489
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1
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Narrow & Broad peaks from 'macs2 bdgdiff'
macs2 next-gen chip-seq peakcalling sequencing written 9 months ago by anu014 • 150 • updated 9 months ago by jared.andrews07 • 730
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2
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1.1k
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5 follow
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ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 11 months ago by Ice P • 0 • updated 9 months ago by simon.vanheeringen • 150
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413
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1
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Normalisation using Input DNA & calling peaks [Chip-seq]
normalization next-gen macs2 chip-seq written 9 months ago by anu014 • 150
2
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3
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1.6k
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3
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 2.4 years ago by lm687 • 50 • updated 9 months ago by macmath • 130
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0
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892
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ChIP-seq differential peak calling (Any way to set the window size for calling differential enriched peaks?)
chip-seq bdgdiff macs2 differential peak calling written 10 months ago by chiefcat • 70
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460
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how to calculate with metadata of GRanges Objects
rtracklayer macs2 bigwig granges genomicranges written 10 months ago by Assa Yeroslaviz • 1.1k
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2
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 22 months ago by datascientist28 • 330 • updated 10 months ago by xd_d • 90
4
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1
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621
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1
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macs2 normalization on broadPeak
atacseq callpeak macs2 written 11 months ago by firatuyulur • 190 • updated 11 months ago by James Ashmore • 2.4k
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