Showing: macs2reset
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9
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2
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6.0k
views
2
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 3.2 years ago by datascientist28410 • updated 2.3 years ago by xd_d90
4
votes
2
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5.1k
views
2
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chip-seq analysis (bowtie2, MACS2)
bowtie2 fastq macs2 alignment written 5.4 years ago by marina-orlova70 • updated 5.4 years ago by Ming Tang2.5k
1
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0
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4.2k
views
0
answers
3
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3
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4.1k
views
3
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Problem with MACS2 Install?
python macs2 chip-seq written 4.2 years ago by priyasshah0 • updated 3.4 years ago by jimmy_zeng90
3
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1
answer
4.0k
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1
answer
question about macs2 --broad-cutoff
macs2 broadpeak broad-cutoff chip-seq written 3.6 years ago by Yu110 • updated 3.6 years ago by ivivek_ngs4.8k
4
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1
answer
4.0k
views
1
answer
MACS2 for K27me3 peak calling
macs2 chip-seq written 4.3 years ago by ac20 • updated 4.3 years ago by Ian5.5k
4
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1
answer
3.9k
views
1
answer
merge chipseq peaks with bedtools/other tool
bedtools macs2 chip-seq written 4.5 years ago by s.vdrzeeuw0 • updated 4.5 years ago by Sukhdeep Singh9.9k
5
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3
answers
3.7k
views
7 follow
3
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MACS2 with multiple replicates
macs2 chip-seq written 2.6 years ago by ariel.balter140 • updated 17 months ago by Hmd40
4
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2
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3.4k
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2
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How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 3.1 years ago by Mike1.4k • updated 3.1 years ago by dariober10k
1
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0
answers
3.4k
views
0
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MACS2 Narrow peak (narrowPeak) output format
macs2 chip-seq written 2.8 years ago by ariel.balter140 • updated 2.8 years ago by Biostar ♦♦ 20
10
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2
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3.4k
views
2
answers
ChipSeq: merge bam file before peak calling
genome macs2 chip-seq written 3.2 years ago by Mike1.4k • updated 3.2 years ago by Constantine240
5
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3
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3.2k
views
3
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macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 3.7 years ago by biocyberman800 • updated 6 months ago by Stefan.Kurtenbach0
2
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1
answer
2.9k
views
1
answer
What does "pileup" mean in the context of MACS2 peak caller?
macs2 chip-seq pileup written 2.6 years ago by ariel.balter140 • updated 2.6 years ago by Santosh Anand5.0k
4
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0
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2.8k
views
0
answers
3
votes
2
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2.8k
views
8 follow
2
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ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 21 months ago by stephenz10 • updated 16 months ago by Alternative230
10
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5
answers
2.8k
views
5
answers
How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 3.1 years ago by Mike1.4k • updated 3.1 years ago by dariober10k
7
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2
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2.7k
views
2
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Paired end and single end with MACS2
peak calling macs2 chip-seq written 2.8 years ago by hannafrida.klein30 • updated 2.8 years ago by Ian5.5k
2
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4
answers
2.7k
views
4
answers
Empty output from MACS2 when using control
peak calling macs2 chip-seq written 3.8 years ago by lm68750 • updated 16 months ago by oriolebaltimore130
7
votes
2
answers
2.6k
views
2
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MACS2 Peak Calling : Different number of peaks for each replicate
biological replicates macs2 chip-seq written 3.8 years ago by ApoorvaB230 • updated 3.3 years ago by Biostar ♦♦ 20
1
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1
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2.6k
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1
answer
2
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2
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2.5k
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5 follow
2
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ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 2.3 years ago by Ice P0 • updated 2.1 years ago by simon.vanheeringen170
4
votes
2
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2.5k
views
2
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Does H3K27ac generate narrow or broad peaks?
chip-seq h3k27ac macs2 broad peak written 2.6 years ago by jklopp0 • updated 2.6 years ago by Devon Ryan92k
2
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1
answer
2.4k
views
1
answer
How is "integer score for display" calculated in MACS2
macs2 chip-seq narrowpeak written 3.1 years ago by Vanilla80 • updated 3.1 years ago by igor8.8k
2
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0
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2.3k
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0
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9
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1
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2.1k
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5 follow
1
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If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
duplicates macs2 chip-seq written 20 months ago by salamandra240 • updated 20 months ago by Biostar ♦♦ 20
0
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1
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2.0k
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1
answer
5
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1
answer
1.9k
views
1
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What does "gappedPeak" mean
enocde macs2 chip-seq written 2.7 years ago by Wet&DryImmunology220 • updated 2.7 years ago by geek_y10.0k
0
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1
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1.9k
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1
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Analysis Pipelines for MBD-Seq Data
macs mbd-seq macs2 methylation R written 3.7 years ago by pm201280 • updated 3.6 years ago by yinzl200720
3
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1
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1.9k
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1
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'effective genome size' , how precisse does it have to be?
macs2 written 3.7 years ago by biocyberman800 • updated 3.7 years ago by Istvan Albert ♦♦ 81k
1
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0
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1.8k
views
0
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