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12
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2
answers
7.6k
views
2
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 4.1 years ago by datascientist28460 • updated 3.1 years ago by xd_d100
4
votes
2
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5.5k
views
2
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chip-seq analysis (bowtie2, MACS2)
bowtie2 fastq macs2 alignment written 6.2 years ago by marina-orlova80 • updated 6.2 years ago by Ming Tang2.6k
4
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3
answers
5.3k
views
3
answers
Problem with MACS2 Install?
python macs2 chip-seq written 5.1 years ago by priyasshah0 • updated 8 months ago by Shicheng Guo8.3k
1
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0
answers
5.1k
views
0
answers
5
votes
3
answers
5.1k
views
7 follow
3
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MACS2 with multiple replicates
macs2 chip-seq written 3.5 years ago by ariel.balter140 • updated 2.3 years ago by bwd40
3
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1
answer
5.0k
views
1
answer
question about macs2 --broad-cutoff
macs2 broadpeak broad-cutoff chip-seq written 4.5 years ago by Yu110 • updated 4.5 years ago by ivivek_ngs5.0k
4
votes
1
answer
4.7k
views
1
answer
merge chipseq peaks with bedtools/other tool
bedtools macs2 chip-seq written 5.3 years ago by s.vdrzeeuw0 • updated 5.3 years ago by Sukhdeep Singh10k
4
votes
1
answer
4.6k
views
1
answer
MACS2 for K27me3 peak calling
macs2 chip-seq written 5.2 years ago by ac20 • updated 5.2 years ago by Ian5.7k
1
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0
answers
4.6k
views
0
answers
MACS2 Narrow peak (narrowPeak) output format
macs2 chip-seq written 3.7 years ago by ariel.balter140 • updated 3.6 years ago by Biostar ♦♦ 20
10
votes
2
answers
4.3k
views
2
answers
ChipSeq: merge bam file before peak calling
genome macs2 chip-seq written 4.1 years ago by Mike1.6k • updated 4.0 years ago by Constantine280
2
votes
1
answer
4.2k
views
1
answer
What does "pileup" mean in the context of MACS2 peak caller?
macs2 chip-seq pileup written 3.5 years ago by ariel.balter140 • updated 3.5 years ago by Santosh Anand5.1k
5
votes
2
answers
4.1k
views
2
answers
How to select top significant ChiPseq peaks from MACS2 output file
macs2 peaks chip-seq written 4.0 years ago by Mike1.6k • updated 4.0 years ago by dariober11k
5
votes
3
answers
3.9k
views
3
answers
macs2 bdgdiff calculation without genomic background control?
macs2 chip-seq written 4.5 years ago by biocyberman810 • updated 16 months ago by Stefan.Kurtenbach50
3
votes
2
answers
3.8k
views
8 follow
2
answers
ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 2.6 years ago by stephenz10 • updated 2.2 years ago by Alternative240
8
votes
2
answers
3.6k
views
2
answers
Paired end and single end with MACS2
peak calling macs2 chip-seq written 3.6 years ago by hannafrida.klein30 • updated 3.6 years ago by Ian5.7k
6
votes
0
answers
3.5k
views
0
answers
4
votes
2
answers
3.5k
views
2
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Does H3K27ac generate narrow or broad peaks?
chip-seq h3k27ac macs2 broad peak written 3.5 years ago by jklopp0 • updated 3.5 years ago by Devon Ryan96k
10
votes
5
answers
3.4k
views
5
answers
How to visualize selected few ChIPseq peaks
macs2 peaks chip-seq written 3.9 years ago by Mike1.6k • updated 3.9 years ago by dariober11k
2
votes
2
answers
3.4k
views
5 follow
2
answers
ATACseq with STAR and macs2
macs2 dmrs atac-seq star written 3.2 years ago by Ice P0 • updated 3.0 years ago by simon.vanheeringen200
14
votes
1
answer
3.3k
views
6 follow
1
answer
If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
duplicates macs2 chip-seq written 2.6 years ago by salamandra330 • updated 2.5 years ago by Biostar ♦♦ 20
2
votes
4
answers
3.3k
views
4
answers
Empty output from MACS2 when using control
peak calling macs2 chip-seq written 4.7 years ago by lm68750 • updated 2.2 years ago by oriolebaltimore150
1
vote
1
answer
3.2k
views
1
answer
2
votes
0
answers
3.0k
views
0
answers
2
votes
1
answer
3.0k
views
1
answer
How is "integer score for display" calculated in MACS2
macs2 chip-seq narrowpeak written 4.0 years ago by Vanilla80 • updated 4.0 years ago by igor11k
7
votes
2
answers
3.0k
views
2
answers
MACS2 Peak Calling : Different number of peaks for each replicate
biological replicates macs2 chip-seq written 4.7 years ago by Apoorva260 • updated 4.2 years ago by Biostar ♦♦ 20
5
votes
1
answer
2.6k
views
1
answer
What does "gappedPeak" mean
enocde macs2 chip-seq written 3.5 years ago by Wet&DryImmunology220 • updated 3.5 years ago by geek_y11k
1
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0
answers
2.6k
views
0
answers
8
votes
1
answer
2.6k
views
9 follow
1
answer
MACS2 --SPMR and --nolambda usage for version 2.1.2
macs2 chip-seq written 23 months ago by varunorama50 • updated 17 months ago by nanoide50
0
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1
answer
2.5k
views
1
answer
9
votes
1
answer
2.4k
views
5 follow
1
answer
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