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<prev • 164 results • page 1 of 6 • next >
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Pan-cancer dataset of GENIE control data download and sharing
maf fusion genie cnv cancer written 4 weeks ago by Shicheng Guo • 8.0k • updated 4 weeks ago by ATpoint ♦ 28k
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0
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94
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how to do gene mutation multivariate survival analysis?
maf coxph mutation written 5 weeks ago by jnmcluo • 0
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1.5k
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0
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Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
maf file-formats conversion sequencing written 2.6 years ago by Luca Beltrame • 220 • updated 11 weeks ago by d33jch • 0
2
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0
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139
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Comparing calls from different VCFs
vcf maf written 3 months ago by vctrm67 • 10
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0
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213
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How does genenomestudio's genotyping module calculate minor allele frequency (Minor Freq)?
maf gwas snp genomestudio written 4 months ago by curious • 160 • updated 3 months ago by Biostar ♦♦ 20
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Extract alignment blocks of a given region from MAF file having whole genome alignments
maf ensembl whole genome alignment ucsc written 2.4 years ago by urjaswita • 90 • updated 5 months ago by Zhenpeng Yu • 0
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4
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13 follow
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Can You Please Tell Me Where I Find Information About .Fai File Format?
maf gatk written 9.6 years ago by Biomed ♦ 4.6k • updated 5 months ago by John Marshall ♦ 1.9k
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0
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343
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Interpretation of Polygenic Risk Score
maf polygenic risk score snp written 5 months ago by Lb • 40
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1
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195
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1
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How to efficiently get reference bases (hg19) for a list of SNV loci (e.g., from a MAF file)?
maf snv written 5 months ago by mrz132435 • 20 • updated 5 months ago by manuel.belmadani • 1.2k
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184
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0
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How to retrieve only blocks that contain sequences for ALL species from a maf file?
maf python mutation annotation format written 6 months ago by anniejeanforster • 0
3
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0
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359
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0
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Converting MAF to Fasta
fasta maf alignment mugsy written 7 months ago by little_more • 20
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1.4k
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How To Stitch Maf Blocks
maf written 6.1 years ago by biorepine • 1.4k • updated 7 months ago by Biostar ♦♦ 20
2
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1
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254
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1
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TCGA: Discrepancy in mutation records numbers based on data acquistion method?
maf R tcga mutation written 7 months ago by sc • 10 • updated 7 months ago by Kevin Blighe ♦ 53k
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1
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302
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1
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How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
maf tcga snp written 7 months ago by Mike • 1.4k • updated 7 months ago by Martina • 10
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0
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253
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0
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View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
maf viewer bam sam written 8 months ago by DanielC • 100
6
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1
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658
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1
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Problem with vcf2maf
maf vcf path wgs written 9 months ago by A • 3.7k • updated 9 months ago by RamRS ♦ 25k
1
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1
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406
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1
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how to use existed database to filter snps in vcf with MAF
maf written 9 months ago by jiangpeng59 • 10 • updated 9 months ago by jared.andrews07 • 4.3k
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2
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571
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2
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Problem with .vcf annovar
vcf annovar maf written 9 months ago by A • 3.7k • updated 9 months ago by onemoreuser • 10
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0
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254
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0
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In MAF files, does c_position is equivalent to cDNA_positions?
maf genome cdna gdc written 9 months ago by mariamcurbelo2061 • 0
0
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1
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490
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1
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bcftools / samtools, which database does the MAF function use?
maf bcftools samtools written 9 months ago by Davide Chicco • 110 • updated 9 months ago by Pierre Lindenbaum ♦ 125k
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1
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247
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1
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query and export SNPs information from ensembl
maf ensembl snps written 10 months ago by landivincenzo • 0 • updated 10 months ago by Ben_Ensembl • 1.1k
3
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1
answer
546
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1
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How to pass MAF file to dNdScv to detect cancer driven genes?
maf R dndscv mutations written 13 months ago by Kirill Kochnev • 10 • updated 11 months ago by Inigo Martincorena • 190
1
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1
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276
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1
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Annotating multiple sequence alignment
maf texshade alignment written 11 months ago by tim.ivanov.92 • 10 • updated 11 months ago by Asaf ♦ 6.7k
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0
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349
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0
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Ensembl Biomart Allele Frequency for different ethnicity
maf allele frequency snps ensembl biomart written 13 months ago by iside • 10
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0
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892
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0
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Threshold of mutation detection in MAF Files
vcf threshold mutation maf written 3.7 years ago by solene.daude • 0 • updated 13 months ago by zx8754 ♦ 8.8k
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0
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246
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0
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IGV browser for mafFrag output
maf maffrag igv written 14 months ago by tim.ivanov.92 • 10
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1
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1.0k
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1
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Mapping mutations to TCGA samples
maf tcga rna-seq mut written 2.2 years ago by esnolli • 50 • updated 14 months ago by Biostar ♦♦ 20
3
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1
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923
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1
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 2.1 years ago by J.F.Jiang • 760 • updated 14 months ago by zx8754 ♦ 8.8k
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0
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532
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count written 15 months ago by Alejandro Jimenez Sanchez • 120
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Problem starting and running Gmaj (MAF file viewer and manipulator)
maf java gmaj jre ucsc written 3.9 years ago by Thomas Bradley • 90 • updated 16 months ago by RamRS ♦ 25k
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