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2
votes
1
answer
940
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1
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On what strand are the mutations shown in MAF files
maf written 3.7 years ago by Max • 130 • updated 16 days ago by Biostar ♦♦ 20
4
votes
0
answers
139
views
0
answers
Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 23 days ago by gaelgarcia05 • 180
0
votes
1
answer
170
views
1
answer
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf maf written 8 weeks ago by genomics Newbie • 0 • updated 8 weeks ago by adam.maikai • 430
1
vote
2
answers
1.7k
views
2
answers
Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 3.4 years ago by Marina Manrique • 1.3k • updated 8 weeks ago by mittu1602 • 140
1
vote
1
answer
176
views
1
answer
How to convert from a .txt to a .maf file?
maf R tcga txt bioinformatics written 11 weeks ago by ksanchez1296 • 0 • updated 11 weeks ago by Kevin Blighe ♦ 21k
0
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0
answers
101
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0
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Converting .maf file to .mfa file
maf mfa alignment convert written 11 weeks ago by sap940 • 0
4
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0
answers
493
views
0
answers
How I could get the MAF from a SNPs list?
maf snps written 7 months ago by vgenepi • 0
118
votes
7
answers
34k
views
84 follow
7
answers
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 5.2 years ago by Cyriac Kandoth ♦ 5.0k • updated 4 months ago by Shicheng Guo • 4.9k
1
vote
0
answers
336
views
0
answers
MAF file handling
maf mutation annotation format tcga written 5 months ago by khj • 0 • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
264
views
1
answer
Merging CNV data with Mutation data and running on MutSigCV
maf merge mutation cnv mutsigcv written 4 months ago by sara.younes • 10 • updated 4 months ago by Sean Davis ♦ 24k
4
votes
0
answers
385
views
0
answers
How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 4 months ago by Bioinfo • 200
0
votes
0
answers
260
views
0
answers
Slide window big maf
maf written 7 months ago by jaimep887 • 0 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
245
views
0
answers
simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 5 months ago by J.F.Jiang • 700
0
votes
0
answers
447
views
0
answers
Calling ASE using QuASAR without availble population allele frequency
vcf maf allele specific expression snp written 8 months ago by serpalma.v • 10 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
273
views
0
answers
Driver gene detection with SomInaClust
maf maftools sominaclust written 6 months ago by arthur.dent • 0
0
votes
0
answers
580
views
0
answers
MAF specification TCGA : Variant_Classification
maf variant classification tcga written 7 months ago by crichard • 0
16
votes
2
answers
511
views
5 follow
2
answers
Alternate nucleotide is more frequent than reference nucleotide. OMG I'm dizzy. How do I stop the twirl?
exome maf variant written 7 months ago by Farrel • 130 • updated 7 months ago by Emily_Ensembl ♦ 15k
5
votes
1
answer
382
views
1
answer
Mapping mutations to TCGA samples
maf tcga rna-seq mut written 7 months ago by esnolli • 30 • updated 7 months ago by Chris Miller ♦ 19k
3
votes
1
answer
509
views
1
answer
Why removing SNPs with MAF<5% for Fst calculation?
maf fst snp written 8 months ago by Mr Locuace • 80 • updated 8 months ago by Kevin Blighe ♦ 21k
0
votes
0
answers
553
views
0
answers
The meaning of '0' allele frequency in vcftools output
vcf maf allele vcftools allele frequency written 8 months ago by Joel Wallenius • 10 • updated 8 months ago by Biostar ♦♦ 20
3
votes
1
answer
423
views
1
answer
DeconstructSigs - Multiple sample size(~90 samples)
maf multiple samples deconstructsigs written 9 months ago by David_emir • 280 • updated 9 months ago by VHahaut • 1.1k
1
vote
1
answer
681
views
1
answer
Extract alignment blocks of a given region from MAF file having whole genome alignments
maf ensembl whole genome alignment ucsc written 9 months ago by urjaswita • 70 • updated 9 months ago by Emily_Ensembl ♦ 15k
0
votes
0
answers
371
views
0
answers
Deconstruct signature package
maf names header written 9 months ago by David_emir • 280
0
votes
0
answers
348
views
0
answers
Maf to VCF file convertion, offline_cache not downloading
maf vcf written 9 months ago by David_emir • 280
0
votes
0
answers
704
views
0
answers
Editing vcf file using bcftools
vcf maf bcftools snp subset written 9 months ago by janhuang.cn • 80
6
votes
1
answer
802
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8 follow
1
answer
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes ensemble vep vcf2maf written 12 months ago by eurioste • 20 • updated 9 months ago by Cyriac Kandoth ♦ 5.0k
4
votes
1
answer
604
views
1
answer
Getting 1000 Genomes phase one MAF values
maf 1000 genomes written 12 months ago by eurioste • 20 • updated 9 months ago by Cyriac Kandoth ♦ 5.0k
0
votes
0
answers
737
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0
answers
ABSOLUTE MAF error
maf absolute written 11 months ago by Alejandro Jimenez Sanchez • 120
1
vote
0
answers
452
views
0
answers
Copy number variation and its impact on allele frequency
maf cnv alle written 11 months ago by MAPK • 1.2k
1
vote
0
answers
654
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0
answers
Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
maf file-formats conversion sequencing written 12 months ago by Luca Beltrame • 190
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