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<prev • 190 results • page 1 of 7 • next >
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NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
maf genome ncbi build grcm38 reference written 19 days ago by Ash • 10
12
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2
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6.7k
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7 follow
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How To Use Maf Files In The Absolute Software
maf somatic copynumber mutation tcga written 7.0 years ago by Danielk • 610 • updated 19 days ago by dv.sobral • 0
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Snpefftomaf error: Changing the format column in vcf file
vcf maf snpefftomaf snpeff written 19 days ago by Ash • 10
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178
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Protein_Change in MAF
maf amino acids mutations written 12 weeks ago by im • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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165
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1
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Prevent SNPs being filtered out due to MAF in PLINK
maf snp plink recode written 6 weeks ago by D H • 0 • updated 6 weeks ago by chrchang523 ♦ 7.6k
40
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2
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9.3k
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29 follow
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Tutorial: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
vcf somatic tutorial tcga maf ensembl written 7.0 years ago by Cyriac Kandoth ♦ 5.5k
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5 follow
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Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
maf file-formats conversion sequencing written 3.6 years ago by Luca Beltrame • 220 • updated 7 weeks ago by Cyriac Kandoth ♦ 5.5k
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121
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minor allele frequency graph
maf bioinformatic snp written 7 weeks ago by tacidilceren • 0
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357
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How to retrieve only blocks that contain sequences for ALL species from a maf file?
maf python mutation annotation format written 19 months ago by anniejeanforster • 10 • updated 10 weeks ago by Zhenpeng Yu • 0
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154
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convert TCGA hg38 maf to hg 19 maf
maf tcga mutation liftover written 12 weeks ago by BioNoobie • 10
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1
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217
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1
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Can you add MAFs together for a gene and calculate the number of recessive individuals?
maf snp written 3 months ago by Seeker • 0
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1
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252
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1
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UCSC Table Browser Filter Constraints for MAF > 5%
table browser maf ucsc written 5 months ago by dumeir • 20 • updated 4 months ago by Luis Nassar • 420
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202
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How to calculate maf for a variant for case and control
maf genetics variant written 5 months ago by MAPK • 1.7k
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How to interpret variant allele frequency?
maf vaf written 5 months ago by SunRise2019 • 10 • updated 5 months ago by d-cameron • 2.3k
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1
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229
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1
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weird to see top gene mutation frequency on my dashboard (plotmafSummary(maf))
maf R written 5 months ago by gaom001 • 10 • updated 5 months ago by h.mon ♦ 32k
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1
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320
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1
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viewing MAF files as dataframe of size over 2GB
maf R python annotations gatk written 5 months ago by noon • 0
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171
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Aggregation and analysis of MAF files
maf R genomics cancer written 7 months ago by weisekyle • 0
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319
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Error while running vcf2maf tool
variant-calling maf vep vcf2maf vcfs written 7 months ago by Jordan • 1.2k
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356
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how to do gene mutation multivariate survival analysis?
maf coxph mutation written 13 months ago by jnmcluo • 0 • updated 8 months ago by Biostar ♦♦ 20
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2
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320
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Conversion of Vep.vcf to MAF format?
maf genome vep snp cancer written 8 months ago by Thind amarinder • 110
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198
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Understanding TCGA somatic mutation files
vcf tcga snps maf written 8 months ago by j.lunger18 • 10 • updated 8 months ago by Kevin Blighe ♦ 69k
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UCSC MAF format left or right align gaps?
genome maf ucsc written 3.7 years ago by jxmavs • 0 • updated 9 months ago by Kevin Blighe ♦ 69k
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4
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3.6k
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4
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 6.0 years ago by Marina Manrique • 1.3k • updated 9 months ago by tsy19900929 • 0
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2
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509
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vcf2maf VEP annotated VCF conversion
vcf maf ngs vcf2maf wgs written 9 months ago by Martina • 30
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1
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216
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1
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GWAS dataset calculating MAF for European dataset
maf gwas written 10 months ago by victoria_mulcahy • 10
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392
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VCF to maf
vcf maf conversion written 10 months ago by fabbri.marco • 0
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273
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MAF comparison Fisher exact test
maf snp written 10 months ago by vishweshwaransridhar • 10 • updated 10 months ago by zx8754 ♦ 9.9k
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516
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Calculate minor allele frequencies with effect allele frequencies in GWAS
maf gwas snp written 10 months ago by rk • 10 • updated 10 months ago by zx8754 ♦ 9.9k
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2
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530
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5 follow
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Get the Minor Allele Frequency for Specific Populations from NCBI dbSNP
ncbi maf dbsnp snp written 11 months ago by andy.wang • 40
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347
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1
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Difference between allele1 vs. allele2 in TCGA MAF files?
maf tcga tumor genotype genomics written 11 months ago by jiaqiwu • 10 • updated 11 months ago by Kevin Blighe ♦ 69k
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