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<prev • 142 results • page 1 of 5 • next >
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count written 4 days ago by Alejandro Jimenez Sanchez • 120
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Problem starting and running Gmaj (MAF file viewer and manipulator)
maf java gmaj jre ucsc written 2.7 years ago by Thomas • 90 • updated 25 days ago by RamRS ♦ 18k
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1
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8 follow
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 16 months ago by eurioste • 20 • updated 27 days ago by zx8754 ♦ 5.3k
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68
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Adding annotation tracks for multiple alignment
multiple alignment annotation maf visualization written 29 days ago by tim.ivanov.92 • 0
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258
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1
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How to calculate Minor Allele Frequency (MAF) for your own population data
vcf maf written 5 weeks ago by Sudhir Jadhao • 60 • updated 5 weeks ago by Kevin Blighe ♦ 30k
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2
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980
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5 follow
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ABSOLUTE MAF error
maf absolute written 14 months ago by Alejandro Jimenez Sanchez • 120 • updated 8 weeks ago by kmvaldez2 • 10
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1
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212
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1
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How calculate MAF from impute2 output in R
maf impute2 snp written 3 months ago by vgenepi • 10 • updated 8 weeks ago by zx8754 ♦ 5.3k
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1
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796
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1
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MAF to Fasta or XMFA - how does it work?
maf fasta xmfa mugsy written 17 months ago by jrj.healey ♦ 7.6k • updated 9 weeks ago by steven.davis • 10
3
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1
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203
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1
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How to get minor allele frequencies from Exac?
maf api allele exac variants written 9 weeks ago by kynnjo • 20 • updated 9 weeks ago by finswimmer ♦ 6.2k
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3
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3
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 3.7 years ago by Marina Manrique • 1.3k • updated 12 weeks ago by sutturka • 120
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154
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TCGA SNP to plink
maf tcga plink written 3 months ago by archie • 60
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1.2k
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1
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Running Galaxy tools locally using bx-python
maf galaxy stitch maf blocks bx-python written 2.8 years ago by Thomas • 90 • updated 3 months ago by Biostar ♦♦ 20
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1.0k
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On what strand are the mutations shown in MAF files
maf written 4.0 years ago by Max • 130 • updated 4 months ago by Biostar ♦♦ 20
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265
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 4 months ago by gaelgarcia05 • 180
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1
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370
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1
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Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf maf written 5 months ago by genomics Newbie • 10 • updated 5 months ago by adam.maikai • 440
1
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1
answer
410
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1
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How to convert from a .txt to a .maf file?
maf R tcga txt bioinformatics written 6 months ago by ksanchez1296 • 0 • updated 6 months ago by Kevin Blighe ♦ 30k
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237
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Converting .maf file to .mfa file
maf mfa alignment convert written 6 months ago by sap940 • 0
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How I could get the MAF from a SNPs list?
maf snps written 11 months ago by vgenepi • 10
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7
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89 follow
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Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 5.5 years ago by Cyriac Kandoth ♦ 5.1k • updated 8 months ago by Shicheng Guo • 6.9k
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528
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MAF file handling
maf mutation annotation format tcga written 9 months ago by khj • 0 • updated 8 months ago by Biostar ♦♦ 20
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1
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439
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1
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Merging CNV data with Mutation data and running on MutSigCV
maf merge mutation cnv mutsigcv written 8 months ago by sara.younes • 20 • updated 8 months ago by Sean Davis ♦ 25k
4
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0
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671
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 8 months ago by Bioinfo • 270
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321
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Slide window big maf
maf written 11 months ago by jaimep887 • 0 • updated 9 months ago by Biostar ♦♦ 20
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367
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simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 9 months ago by J.F.Jiang • 710
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546
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Calling ASE using QuASAR without availble population allele frequency
vcf maf allele specific expression snp written 11 months ago by serpalma.v • 20 • updated 10 months ago by Biostar ♦♦ 20
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0
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391
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Driver gene detection with SomInaClust
maf maftools sominaclust written 10 months ago by arthur.dent • 0
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MAF specification TCGA : Variant_Classification
maf variant classification tcga written 11 months ago by crichard • 0
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2
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772
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8 follow
2
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Alternate nucleotide is more frequent than reference nucleotide. OMG I'm dizzy. How do I stop the twirl?
exome maf variant written 11 months ago by Farrel • 160 • updated 11 months ago by Emily_Ensembl ♦ 16k
5
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1
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529
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1
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Mapping mutations to TCGA samples
maf tcga rna-seq mut written 11 months ago by esnolli • 40 • updated 11 months ago by Chris Miller ♦ 20k
3
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1
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707
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1
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Why removing SNPs with MAF<5% for Fst calculation?
maf fst snp written 12 months ago by Mr Locuace • 80 • updated 12 months ago by Kevin Blighe ♦ 30k
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