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<prev • 148 results • page 1 of 5 • next >
3
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1
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170
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1
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How to pass MAF file to dNdScv to detect cancer driven genes?
maf R dndscv mutations written 9 weeks ago by Kirill Kochnev • 10 • updated 4 days ago by Inigo Martincorena • 80
1
vote
1
answer
85
views
1
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Annotating multiple sequence alignment
maf texshade alignment written 18 days ago by tim.ivanov.92 • 10 • updated 18 days ago by Asaf ♦ 5.2k
0
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0
answers
106
views
0
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Ensembl Biomart Allele Frequency for different ethnicity
maf allele frequency snps ensembl biomart written 8 weeks ago by iside • 10
0
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0
answers
711
views
0
answers
Threshold of mutation detection in MAF Files
vcf threshold mutation maf written 2.8 years ago by solene.daude • 0 • updated 8 weeks ago by zx8754 ♦ 6.5k
0
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0
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176
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0
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Allele frequencies not matching with reference panel (HRC)
maf gwas written 9 weeks ago by ZB • 10 • updated 9 weeks ago by RamRS ♦ 20k
0
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0
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93
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0
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IGV browser for mafFrag output
maf maffrag igv written 12 weeks ago by tim.ivanov.92 • 10
6
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1
answer
678
views
1
answer
Mapping mutations to TCGA samples
maf tcga rna-seq mut written 15 months ago by esnolli • 50 • updated 12 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
572
views
1
answer
Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 13 months ago by J.F.Jiang • 730 • updated 12 weeks ago by zx8754 ♦ 6.5k
0
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0
answers
228
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0
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count written 4 months ago by Alejandro Jimenez Sanchez • 120
0
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0
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1.1k
views
0
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Problem starting and running Gmaj (MAF file viewer and manipulator)
maf java gmaj jre ucsc written 3.0 years ago by Thomas • 90 • updated 4 months ago by RamRS ♦ 20k
6
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1
answer
1.3k
views
8 follow
1
answer
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 20 months ago by eurioste • 20 • updated 4 months ago by zx8754 ♦ 6.5k
0
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0
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133
views
0
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Adding annotation tracks for multiple alignment
multiple alignment annotation maf visualization written 5 months ago by tim.ivanov.92 • 10
2
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1
answer
569
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1
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How to calculate Minor Allele Frequency (MAF) for your own population data
vcf maf written 5 months ago by Sudhir Jadhao • 60 • updated 5 months ago by Kevin Blighe ♦ 37k
0
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2
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1.2k
views
5 follow
2
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ABSOLUTE MAF error
maf absolute written 18 months ago by Alejandro Jimenez Sanchez • 120 • updated 5 months ago by kmvaldez2 • 10
1
vote
1
answer
330
views
1
answer
How calculate MAF from impute2 output in R
maf impute2 snp written 7 months ago by vgenepi • 10 • updated 6 months ago by zx8754 ♦ 6.5k
1
vote
1
answer
989
views
1
answer
MAF to Fasta or XMFA - how does it work?
maf fasta xmfa mugsy written 21 months ago by jrj.healey ♦ 10k • updated 6 months ago by steven.davis • 10
3
votes
1
answer
367
views
1
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How to get minor allele frequencies from Exac?
maf api allele exac variants written 6 months ago by kynnjo • 20 • updated 6 months ago by finswimmer ♦ 9.8k
1
vote
3
answers
2.2k
views
3
answers
Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 4.0 years ago by Marina Manrique • 1.3k • updated 6 months ago by sutturka • 120
0
votes
0
answers
276
views
0
answers
TCGA SNP to plink
maf tcga plink written 7 months ago by archie • 70
5
votes
1
answer
1.3k
views
1
answer
Running Galaxy tools locally using bx-python
maf galaxy stitch maf blocks bx-python written 3.1 years ago by Thomas • 90 • updated 7 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.1k
views
1
answer
On what strand are the mutations shown in MAF files
maf written 4.3 years ago by Max • 130 • updated 8 months ago by Biostar ♦♦ 20
4
votes
0
answers
418
views
0
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
maf 1000genomes exac snp sequencing written 8 months ago by gaelgarcia05 • 180
0
votes
1
answer
577
views
1
answer
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf maf written 9 months ago by genomics Newbie • 20 • updated 9 months ago by adam.maikai • 460
1
vote
1
answer
711
views
1
answer
How to convert from a .txt to a .maf file?
maf R tcga txt bioinformatics written 10 months ago by ksanchez1296 • 0 • updated 10 months ago by Kevin Blighe ♦ 37k
0
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0
answers
346
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0
answers
Converting .maf file to .mfa file
maf mfa alignment convert written 10 months ago by sap940 • 0
4
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0
answers
1.1k
views
0
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How I could get the MAF from a SNPs list?
maf snps written 15 months ago by vgenepi • 10
125
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5
answers
37k
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89 follow
5
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Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 5.8 years ago by Cyriac Kandoth ♦ 5.2k • updated 12 months ago by Shicheng Guo • 7.4k
1
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0
answers
756
views
0
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MAF file handling
maf mutation annotation format tcga written 13 months ago by khj • 0 • updated 12 months ago by Biostar ♦♦ 20
5
votes
1
answer
603
views
1
answer
Merging CNV data with Mutation data and running on MutSigCV
maf merge mutation cnv mutsigcv written 12 months ago by sara.younes • 20 • updated 12 months ago by Sean Davis ♦ 25k
4
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0
answers
945
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0
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How to get the simple somatic mutation vcf file from GDC data portal?
vcf maf tcgabiolinks gdc mutations written 12 months ago by Vasu • 300
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