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<prev • 156 results • page 1 of 6 • next >
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How To Stitch Maf Blocks
maf written 5.5 years ago by biorepine • 1.4k • updated 16 hours ago by Biostar ♦♦ 20
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1
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96
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1
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TCGA: Discrepancy in mutation records numbers based on data acquistion method?
maf R tcga mutation written 20 days ago by sc • 10 • updated 13 days ago by Kevin Blighe ♦ 44k
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1
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102
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1
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How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
maf tcga snp written 22 days ago by Mike • 1.3k • updated 20 days ago by Martina • 10
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121
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View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
maf viewer bam sam written 7 weeks ago by DanielC • 80
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1
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1
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Problem with vcf2maf
maf vcf path wgs written 9 weeks ago by F • 3.4k • updated 9 weeks ago by RamRS ♦ 22k
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145
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how to use existed database to filter snps in vcf with MAF
maf written 9 weeks ago by jiangpeng59 • 10 • updated 9 weeks ago by jared.andrews07 • 2.5k
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Problem with .vcf annovar
vcf annovar maf written 9 weeks ago by F • 3.4k • updated 9 weeks ago by onemoreuser • 10
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146
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In MAF files, does c_position is equivalent to cDNA_positions?
maf genome cdna gdc written 10 weeks ago by mariamcurbelo2061 • 0
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252
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bcftools / samtools, which database does the MAF function use?
maf bcftools samtools written 11 weeks ago by Davide Chicco • 80 • updated 11 weeks ago by Pierre Lindenbaum ♦ 120k
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121
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query and export SNPs information from ensembl
maf ensembl snps written 12 weeks ago by landivincenzo • 0 • updated 12 weeks ago by Ben_Ensembl • 1.0k
3
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1
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313
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1
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How to pass MAF file to dNdScv to detect cancer driven genes?
maf R dndscv mutations written 6 months ago by Kirill Kochnev • 10 • updated 4 months ago by Inigo Martincorena • 200
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1
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187
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Annotating multiple sequence alignment
maf texshade alignment written 4 months ago by tim.ivanov.92 • 10 • updated 4 months ago by Asaf ♦ 5.7k
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207
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Ensembl Biomart Allele Frequency for different ethnicity
maf allele frequency snps ensembl biomart written 6 months ago by iside • 10
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Threshold of mutation detection in MAF Files
vcf threshold mutation maf written 3.1 years ago by solene.daude • 0 • updated 6 months ago by zx8754 ♦ 7.5k
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150
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IGV browser for mafFrag output
maf maffrag igv written 7 months ago by tim.ivanov.92 • 10
6
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1
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833
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1
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Mapping mutations to TCGA samples
maf tcga rna-seq mut written 19 months ago by esnolli • 50 • updated 7 months ago by Biostar ♦♦ 20
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1
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1
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Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 17 months ago by J.F.Jiang • 750 • updated 7 months ago by zx8754 ♦ 7.5k
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count written 8 months ago by Alejandro Jimenez Sanchez • 120
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Problem starting and running Gmaj (MAF file viewer and manipulator)
maf java gmaj jre ucsc written 3.3 years ago by Thomas Bradley • 90 • updated 9 months ago by RamRS ♦ 22k
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8 follow
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 2.0 years ago by eurioste • 20 • updated 9 months ago by zx8754 ♦ 7.5k
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218
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Adding annotation tracks for multiple alignment
multiple alignment annotation maf visualization written 9 months ago by tim.ivanov.92 • 10
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1
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997
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1
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How to calculate Minor Allele Frequency (MAF) for your own population data
vcf maf written 9 months ago by Sudhir Jadhao • 60 • updated 9 months ago by Kevin Blighe ♦ 44k
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5 follow
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ABSOLUTE MAF error
maf absolute written 23 months ago by Alejandro Jimenez Sanchez • 120 • updated 10 months ago by kmvaldez2 • 10
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491
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1
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How calculate MAF from impute2 output in R
maf impute2 snp written 11 months ago by vgenepi • 10 • updated 10 months ago by zx8754 ♦ 7.5k
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1.2k
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MAF to Fasta or XMFA - how does it work?
maf fasta xmfa mugsy written 2.1 years ago by jrj.healey ♦ 12k • updated 10 months ago by steven.davis • 10
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1
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547
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How to get minor allele frequencies from Exac?
maf api allele exac variants written 10 months ago by kynnjo • 20 • updated 10 months ago by finswimmer ♦ 11k
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Issue converting VCF to MAF using snpEff annotations
maf vcf snpeff vcf2maf written 4.4 years ago by Marina Manrique • 1.3k • updated 10 months ago by sutturka • 150
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440
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TCGA SNP to plink
maf tcga plink written 11 months ago by archie • 70
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1
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1.4k
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1
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Running Galaxy tools locally using bx-python
maf galaxy stitch maf blocks bx-python written 3.5 years ago by Thomas Bradley • 90 • updated 11 months ago by Biostar ♦♦ 20
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1
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1.2k
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1
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On what strand are the mutations shown in MAF files
maf written 4.7 years ago by Max • 130 • updated 12 months ago by Biostar ♦♦ 20
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