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<prev • 162 results • page 1 of 6 • next >
2
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89
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Comparing calls from different VCFs
vcf maf written 13 days ago by vctrm67 • 0
0
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0
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143
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0
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How does genenomestudio's genotyping module calculate minor allele frequency (Minor Freq)?
maf gwas snp genomestudio written 5 weeks ago by brett.vanderwerff • 140 • updated 25 days ago by Biostar ♦♦ 20
1
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2
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1.5k
views
2
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Extract alignment blocks of a given region from MAF file having whole genome alignments
maf ensembl whole genome alignment ucsc written 2.1 years ago by urjaswita • 80 • updated 9 weeks ago by Zhenpeng Yu • 0
42
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4
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20k
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13 follow
4
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Can You Please Tell Me Where I Find Information About .Fai File Format?
maf gatk written 9.4 years ago by Biomed ♦ 4.6k • updated 12 weeks ago by John Marshall ♦ 1.7k
3
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0
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178
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0
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Interpretation of Polygenic Risk Score
maf polygenic risk score snp written 12 weeks ago by Lb • 30
0
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1
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137
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1
answer
How to efficiently get reference bases (hg19) for a list of SNV loci (e.g., from a MAF file)?
maf snv written 12 weeks ago by mrz132435 • 20 • updated 12 weeks ago by manuel.belmadani • 1.1k
0
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133
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0
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How to retrieve only blocks that contain sequences for ALL species from a maf file?
maf python mutation annotation format written 3 months ago by anniejeanforster • 0
3
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0
answers
209
views
0
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Converting MAF to Fasta
fasta maf alignment mugsy written 4 months ago by little_more • 10
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0
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1.4k
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0
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How To Stitch Maf Blocks
maf written 5.9 years ago by biorepine • 1.4k • updated 4 months ago by Biostar ♦♦ 20
2
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1
answer
194
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1
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TCGA: Discrepancy in mutation records numbers based on data acquistion method?
maf R tcga mutation written 4 months ago by sc • 10 • updated 4 months ago by Kevin Blighe ♦ 50k
0
votes
1
answer
241
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1
answer
How to calculate base substitution mutation frequency (C>T T>A C>G T>C T>G C>A) from TCGA MAF files
maf tcga snp written 4 months ago by Mike • 1.4k • updated 4 months ago by Martina • 10
0
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0
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203
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0
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View MAF file and the reference sequence in a genome viewer/annotator along with SAM/BAM?
maf viewer bam sam written 5 months ago by DanielC • 100
6
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1
answer
474
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1
answer
Problem with vcf2maf
maf vcf path wgs written 6 months ago by A • 3.5k • updated 6 months ago by RamRS ♦ 24k
1
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1
answer
304
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1
answer
how to use existed database to filter snps in vcf with MAF
maf written 6 months ago by jiangpeng59 • 10 • updated 6 months ago by jared.andrews07 • 3.4k
1
vote
2
answers
396
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2
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Problem with .vcf annovar
vcf annovar maf written 6 months ago by A • 3.5k • updated 6 months ago by onemoreuser • 10
0
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0
answers
210
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0
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In MAF files, does c_position is equivalent to cDNA_positions?
maf genome cdna gdc written 6 months ago by mariamcurbelo2061 • 0
0
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1
answer
402
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1
answer
bcftools / samtools, which database does the MAF function use?
maf bcftools samtools written 6 months ago by Davide Chicco • 90 • updated 6 months ago by Pierre Lindenbaum ♦ 123k
1
vote
1
answer
199
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1
answer
query and export SNPs information from ensembl
maf ensembl snps written 6 months ago by landivincenzo • 0 • updated 6 months ago by Ben_Ensembl • 1.0k
3
votes
1
answer
434
views
1
answer
How to pass MAF file to dNdScv to detect cancer driven genes?
maf R dndscv mutations written 10 months ago by Kirill Kochnev • 10 • updated 8 months ago by Inigo Martincorena • 190
1
vote
1
answer
231
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1
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Annotating multiple sequence alignment
maf texshade alignment written 8 months ago by tim.ivanov.92 • 10 • updated 8 months ago by Asaf ♦ 6.3k
0
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0
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293
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0
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Ensembl Biomart Allele Frequency for different ethnicity
maf allele frequency snps ensembl biomart written 10 months ago by iside • 10
0
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0
answers
852
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0
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Threshold of mutation detection in MAF Files
vcf threshold mutation maf written 3.4 years ago by solene.daude • 0 • updated 10 months ago by zx8754 ♦ 8.3k
0
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0
answers
201
views
0
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IGV browser for mafFrag output
maf maffrag igv written 11 months ago by tim.ivanov.92 • 10
6
votes
1
answer
942
views
1
answer
Mapping mutations to TCGA samples
maf tcga rna-seq mut written 23 months ago by esnolli • 50 • updated 11 months ago by Biostar ♦♦ 20
3
votes
1
answer
836
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1
answer
Simulate genotypes for SNPs, considering MAF and LD structure
maf simulation snp genotype ld written 22 months ago by J.F.Jiang • 760 • updated 11 months ago by zx8754 ♦ 8.3k
0
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0
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448
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0
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vcf2maf not generating `t_depth t_ref_count t_alt_count` columns in MAF file
vcf maf t_depth t_ref_count talt_count written 12 months ago by Alejandro Jimenez Sanchez • 120
0
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0
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1.3k
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0
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Problem starting and running Gmaj (MAF file viewer and manipulator)
maf java gmaj jre ucsc written 3.7 years ago by Thomas Bradley • 90 • updated 13 months ago by RamRS ♦ 24k
6
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1
answer
1.7k
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8 follow
1
answer
Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes vep vcf2maf ensembl written 2.4 years ago by eurioste • 20 • updated 13 months ago by zx8754 ♦ 8.3k
0
votes
0
answers
289
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0
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Adding annotation tracks for multiple alignment
multiple alignment annotation maf visualization written 13 months ago by tim.ivanov.92 • 10
2
votes
1
answer
1.4k
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1
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How to calculate Minor Allele Frequency (MAF) for your own population data
vcf maf written 13 months ago by Sudhir Jadhao • 60 • updated 13 months ago by Kevin Blighe ♦ 50k
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