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<prev • 112 results • page 1 of 4 • next >
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Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
maf file-formats conversion sequencing written 6 days ago by Luca Beltrame • 160
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1
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194
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1
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Error when running Genome MuSiC: no smg genes
maf software error music genome music smg written 4 months ago by C Wang • 0 • updated 10 days ago by Chris Miller ♦ 18k
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80
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5 follow
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Installing ensembl 86 VEP and vcf2maf and getting SNP MAFs
maf 1000genomes ensemble vep vcf2maf written 14 days ago by eurioste • 20
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95
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Getting 1000 Genomes phase one MAF values
maf 1000 genomes written 15 days ago by eurioste • 20
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106
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From COSMIC mutations to MAF files
maf cosmic driver gene mutsigcv written 5 weeks ago by fernandov • 0
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89
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Resources for finding out the allele frequency of a SNV by subpopulation
maf allele frequency subpopulation snp written 6 weeks ago by Vincent Laufer • 850
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121
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MAF to Fasta or XMFA - how does it work?
maf fasta xmfa mugsy written 6 weeks ago by jrj.healey • 1.6k
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93
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UCSC MAF format left or right align gaps?
genome maf ucsc written 6 weeks ago by jxmavs • 0
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162
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1
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Mutation processing by cbioportal
cbioportab maf tcga gdc written 8 weeks ago by Arnaud Ceol • 750 • updated 8 weeks ago by igor • 4.3k
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Confusion regarding selection of TCGA maf files for analysis
maf tcga dashboard data matrix written 2.3 years ago by monukmr98 • 60 • updated 9 weeks ago by Biostar ♦♦ 20
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148
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Comparing MAF of multiple SNP against several populations using chi-squared analysis
maf populations plink chi-squared analysis written 12 weeks ago by maroua.boujemaa • 0
54
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5
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18 follow
5
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Getting Allele Frequencies From 1000 Genomes
genome hapmap ucsc maf ensembl written 6.2 years ago by Stephen ♦ 2.6k • updated 3 months ago by Isaac Joseph • 60
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144
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Calculating minor allele concordance
maf array exome impute concordance written 3 months ago by Vivek • 1.7k
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MAF (minor allele frequency) calculation for finding rare variants from TCGA
maf rare variant tcga snp written 2.7 years ago by imagineyd • 60 • updated 4 months ago by aliexs618 • 0
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6
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75 follow
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Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
cancer tutorial tcga maf music mutation written 4.2 years ago by Cyriac Kandoth ♦ 4.6k
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2
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1.4k
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2
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CNV frequencies and MAF
maf xhmm cnv written 2.6 years ago by Leandro Lima • 830 • updated 4 months ago by smarini1 • 0
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215
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How to identify read depth from maf files?
maf read sequencing depth written 4 months ago by omd • 10
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2
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459
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2
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XMFA to MAF
maf alignment xmfa written 5 months ago by Lynda Ait-Zai • 20
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329
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tools to calculate Exac population specific frequency
maf exac sequencing written 5 months ago by jan • 60
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1
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402
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1
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Converting Vcf File To Maf
vcf maf non-coding written 5 months ago by anshupa.vssut • 10 • updated 5 months ago by mbyvcm • 260
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4.0k
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Variant allele frequency in TCGA and ICGC
genome vcf icgc tcga maf written 20 months ago by Maarten Slagter • 50 • updated 6 months ago by Biostar ♦♦ 20
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363
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Generating Multiple Alignment Format file (Maf)
maf multiple alignmnet written 6 months ago by roz_safavi • 0
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252
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Obtaining a list of SNPs that do not vary in different populations
maf hapmap plink written 7 months ago by HumeMarx • 20
39
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2
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6.0k
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27 follow
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Tutorial: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
vcf somatic tutorial tcga maf ensembl written 3.4 years ago by Cyriac Kandoth ♦ 4.6k
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211
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Music SMG test for non coding regions
maf music roi non-coding written 7 months ago by anshupa.vssut • 10 • updated 7 months ago by WouterDeCoster ♦ 19k
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229
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Using Stitch MAF blocks withou Galaxy
maf stitch galaxy written 7 months ago by elsoja • 0
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443
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Minor Allele Frequency in PLINK
array maf quality control plink filtering written 8 months ago by F.R. • 30
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Should variant phasing be performed before or after filtering by Minor Allele Frequency?
maf gwas phasing beagle written 11 months ago by i.wilson • 10 • updated 8 months ago by Biostar ♦♦ 20
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TCGA Birdseed vs MAF vs VCF
genome maf tcga mutation calling snp written 8 months ago by e.chin • 0
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1
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converting to MAF or clustal format
maf fasta fastq written 9 months ago by rahel14350 • 10 • updated 9 months ago by Medhat • 6.5k
<prev • 112 results • page 1 of 4 • next >
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