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3
votes
1
answer
65
views
1
answer
Where to upload protein coding gene annotation ?
protein maker written 7 days ago by Picasa • 490 • updated 7 days ago by Juke-34 • 3.7k
2
votes
0
answers
79
views
0
answers
Less and less genes predicted with each iteration of SNAP/MAKER
annotation gene prediction snap genomics maker written 7 days ago by mrmrwinter • 0
0
votes
1
answer
79
views
1
answer
Maker_functional_gff error "Can't use string ("") as a HASH ref"
maker blastp functional annotation written 10 days ago by luca • 0
5
votes
1
answer
132
views
1
answer
Counting CDS's in Maker output
annotation gene prediction maker est cds written 28 days ago by mrmrwinter • 0 • updated 28 days ago by Juke-34 • 3.7k
0
votes
0
answers
179
views
0
answers
MAKER command maker2zff produce empty .ann and .dna files
genome snap maker written 4 months ago by 956120746 • 0 • updated 3 months ago by h.mon ♦ 29k
0
votes
1
answer
102
views
1
answer
SnpEff database with maker annotation format
snpeff maker written 3 months ago by Picasa • 490 • updated 3 months ago by prince26121991 • 70
5
votes
3
answers
750
views
5 follow
3
answers
Alternatives to RepeatModeler / nseg install fail
annotation maker written 13 months ago by Jake Warner • 800 • updated 3 months ago by Juke-34 • 3.7k
1
vote
0
answers
110
views
0
answers
Maker: SNAP training error
genome annotation maker written 4 months ago by ashaneev07 • 20 • updated 4 months ago by zx8754 ♦ 9.1k
0
votes
2
answers
2.0k
views
2
answers
MAKER command maker2zff .ann and .dna files are empty
genome software error next-gen maker sequencing written 3.6 years ago by mks002 • 190 • updated 4 months ago by Juke-34 • 3.7k
7
votes
2
answers
1.0k
views
9 follow
2
answers
Genome de novo annotation with Maker
genome annotation snap maker written 17 months ago by alslonik • 130
0
votes
0
answers
148
views
0
answers
Maker-P supporting software: repeatrunner installation
genome annotation sequencing maker written 4 months ago by ashaneev07 • 20
1
vote
1
answer
203
views
1
answer
Maker Genome Annotation - protein isoforms
genome annotation maker written 5 months ago by luca • 0
0
votes
1
answer
199
views
1
answer
Predicting coding sequence region from GFF with exons + reference genome
genome annotation gff augustus maker written 5 months ago by Grey Monroe • 10 • updated 5 months ago by Juke-34 • 3.7k
2
votes
1
answer
1.3k
views
1
answer
Option -categorize in SNAP gene prediction.
annotation snap maker written 3.5 years ago by Picasa • 490 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
283
views
0
answers
Possible precedence issue with control flow operator
perl annotation maker written 7 months ago by ashaneev07 • 20
1
vote
0
answers
362
views
0
answers
Maker (Gene annotation) RepeatMasker error
gene annotation repeatmasker maker written 7 months ago by ricardoguerreiro2121 • 60
5
votes
1
answer
767
views
1
answer
RepBase alternative for maker?
genome annotation repbase maker written 7 months ago by Colaptes • 40 • updated 7 months ago by Charles Warden ♦ 7.6k
5
votes
1
answer
514
views
6 follow
1
answer
Maker Annotation pipeline Output error
gene annotation next-gen maker written 7 months ago by ashaneev07 • 20 • updated 7 months ago by toralmanvar • 840
4
votes
1
answer
295
views
1
answer
maker has been running for a long time
genome annotation maker written 8 months ago by olechnwin • 30
0
votes
2
answers
982
views
2
answers
LTR-Harvest false positives (Maker repeat library construction)
annotation ltr-harvest maker written 2.3 years ago by timo.metz • 0 • updated 10 months ago by vflorelo • 0
0
votes
0
answers
300
views
0
answers
MAKER installation problem: External Programs
maker written 10 months ago by yerspestis • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 127k
1
vote
1
answer
435
views
1
answer
Do you know some script or program to plot the results from Interproscan?
assembly maker interproscan annotation written 13 months ago by imda • 10 • updated 13 months ago by Buffo • 1.8k
1
vote
0
answers
260
views
0
answers
Do you know some scripts to plot MAKER annotation results?
genome annotation maker assembly written 13 months ago by imda • 10
12
votes
2
answers
1.5k
views
2
answers
How to get proteins from GFF file resulted from MAKER annotation
genome assembly maker gff3 fasta written 13 months ago by imda • 10 • updated 13 months ago by jean.elbers • 1.3k
1
vote
0
answers
1.0k
views
0
answers
Filtering GFF annotations file
R gff maker written 14 months ago by alslonik • 130
2
votes
1
answer
675
views
1
answer
Reviewing Maker annotation
genome annotation maker written 15 months ago by alslonik • 130
3
votes
1
answer
716
views
1
answer
MAKER genome annotation results confusion
genome annotation augustus maker written 17 months ago by imda • 10 • updated 17 months ago by Juke-34 • 3.7k
0
votes
0
answers
561
views
0
answers
maker2zff error on run
maker written 18 months ago by jferrier • 0
0
votes
0
answers
662
views
0
answers
Functional Annotation with Maker
genome annotation protein maker written 19 months ago by RBGE-Hillebrandia • 0 • updated 19 months ago by RamRS ♦ 26k
1
vote
0
answers
547
views
0
answers
Using Abinitio.Pep file vs Pep.all - Annotating using Maker
annotation abinitio snp maker written 21 months ago by ggman • 80
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