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SNAP error in MAKER exon:out_of_bounds

genome annotation snap maker2 written 12 months ago by preethibagopi5 • 0 • updated 6 months ago by cheapshoppinggifts • 0

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300

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Maker2 Transcriptome Input

annotation trinity maker2 transcriptome written 9 months ago by Colaptes • 40

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2.8k

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Running MAKER2 pipeline with Augustus for the first time -- need some guidance

genome latest gene annotation augustus maker2 written 4.8 years ago by voidnyx • 10 • updated 20 months ago by Biostar ♦♦ 20

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972

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Maker2 restart after crash

genome annotation maker2 written 2.4 years ago by sukyi • 0 • updated 2.4 years ago by genomax ♦ 85k

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1.6k

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Augustus/Maker2 failing due to invalid nucleotides in sequence

augustus assembly maker2 annotation written 2.8 years ago by harishk0201 • 70

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C: Python code: too slow to compare two dicts by ATpoint ♦ 36k
It is unfortunate to only show a block of code. Please illustrate the problem by showing input an...
A: Creating a 5 or 10-fold cross validation based on sequence similarity of protein by trent • 0
I wrote how I did this with CD Hit here, hopefully it's helpful: https://www.trenthauck.com/cd-hi...
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> Q - 1. I had read that the batch effect removal algorithm is required > when your approac...
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Yes, that is indeed a good recommendation.
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Thank you for the help. As you suggested I ran assembly through cd-hit-est with parameter -c 0.9....
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I understand your answer, it is good formulated. But it can be misleading for someone that does n...
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Not tested it but this comes to mind ` bcftools filter -S . -e 'GT=="het"' yourFile.vcf.gz`
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This is something you could have easily found by doing a simple search. Here is the [first result...
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Cool that you got another solution. The issue in your original biomaRt approach is that the **MG...
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Hi Chadi, I'm afraid there's no "same" GFF file for GRCh37 and GRCh38. You can find all RefSeq ve...
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> Nextra Transposase sequences are still there If you are using galaxy you could try trimgalo...
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> 1- So, how can I improve these results using galaxy tools, in which I > can move to the a...

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