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9
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7 follow
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Hapmap 3 in hg19/GRCh37 plink format PED and MAP
hapmap 3 hg18 map ped hg19 written 10 months ago by Shicheng Guo • 7.4k
9
votes
1
answer
3.5k
views
1
answer
How To Draw Plasmid Map
map written 5.0 years ago by HG • 1.1k • updated 8 weeks ago by Biostar ♦♦ 20
0
votes
0
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146
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0
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breseq doesn't identify true SNPs when mapped a Wild Type genome with the Mutant reads and vice versa
genome assembly sequence map snp written 12 weeks ago by ashishbeck96 • 0
9
votes
1
answer
21k
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1
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.4 years ago by roll • 240 • updated 12 weeks ago by zx8754 ♦ 6.5k
5
votes
2
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197
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6 follow
2
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How to extract the same mapped region by multiple samples ?
samples bam map written 3 months ago by Picasa • 390 • updated 3 months ago by Alex Reynolds ♦ 27k
2
votes
0
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204
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5 follow
0
answers
Primer design from bam file ?
map primer written 3 months ago by Picasa • 390 • updated 3 months ago by WouterDeCoster ♦ 36k
0
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0
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145
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0
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how to deal with 0 in allele from ped/map files
plink ped map written 3 months ago by Victor • 10
6
votes
1
answer
263
views
1
answer
what does map type FGE stands for?
mm map fge glycoscience glycomapsdb written 5 months ago by shirben14 • 40
1
vote
0
answers
198
views
0
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SNPs detection on genetic/physical maps in plants
plants map snp written 7 months ago by belaarouch.95 • 0
1
vote
1
answer
280
views
1
answer
converting FPC maps to CMAP format
genome perl map cmap fpc written 10 months ago by bradford.condon • 30
0
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0
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417
views
0
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Selscan error: Variant physical position must be strictly increasing.
selscan map snp written 10 months ago by spiral01 • 80
2
votes
0
answers
438
views
0
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Mapping Affy probe ids
probe map affymetrix written 11 months ago by Jalal K. Siddiqui • 0 • updated 11 months ago by genomax ♦ 62k
2
votes
1
answer
503
views
1
answer
From base pair position to gene name to epigenetics
genome gene epigenetics methylation map written 14 months ago by blue.dot • 0 • updated 14 months ago by Devon Ryan ♦ 88k
1
vote
1
answer
787
views
1
answer
Mapping 16s rRNA to a tree (fast and best ways)
16s rrna map tree written 15 months ago by stanislav33 • 0
2
votes
1
answer
649
views
1
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Bedtools map to generate a new bedgraph
bedtools map written 16 months ago by Seigfried • 70 • updated 16 months ago by michael.ante • 3.0k
3
votes
1
answer
3.3k
views
1
answer
Bowtie2 alignment: Reads that aligned concordantly >1 times
bowtie2 alignment map bowtie score written 4.4 years ago by elfeusilva • 0 • updated 17 months ago by Biostar ♦♦ 20
17
votes
3
answers
5.8k
views
6 follow
3
answers
Compute Genetic Map
genetics map distance written 9.0 years ago by Pierre • 480 • updated 21 months ago by Biostar ♦♦ 20
0
votes
1
answer
740
views
1
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Latest release of '1000 genomes data'
vcf 1000 genomes data map ped written 2.1 years ago by tesfadej2003 • 10
0
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0
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3.1k
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0
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How to convert txt file to ped and map using plink
map plink ped txt written 2.2 years ago by BlackHole • 0
0
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0
answers
830
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0
answers
Question: Error converting MAP/PED to GEN in Gtools
gen gtools map ped written 2.3 years ago by sultan.chaudhury • 0
4
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2
answers
2.5k
views
2
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How to plot haplogroup map with pie charts?
plot haplogroup phylogeography map mapping written 2.4 years ago by veronicaschroeder78 • 110 • updated 2.4 years ago by igor ♦ 7.3k
0
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1
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1.1k
views
1
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GATK Mapping quality value
gatk quality map written 2.6 years ago by Kritika • 260 • updated 2.6 years ago by Pierre Lindenbaum ♦ 116k
0
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2
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1.9k
views
2
answers
Help constructing a restriction map of a linear fragment of DNA?
plasmid restriction molecular biology dna map written 3.0 years ago by bryden.daniel • 0 • updated 3.0 years ago by Istvan Albert ♦♦ 79k
3
votes
1
answer
955
views
1
answer
convert plink to weka
weka plink ped map written 3.0 years ago by marwa.cs91 • 20
0
votes
1
answer
1.3k
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1
answer
How to handle missing values using Expectation Maximization
expectation maximization plink ped map written 3.1 years ago by marwa.cs91 • 20 • updated 3.1 years ago by Jean-Karim Heriche ♦ 18k
3
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2
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1.8k
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2
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extract SNPs of certain gene
gene snps plink location map written 3.2 years ago by marwa.cs91 • 20 • updated 3.2 years ago by chrchang523 ♦ 4.6k
3
votes
1
answer
760
views
1
answer
rna differential expression
map alignment kegg blast rna-seq written 3.3 years ago by capleo88 • 20 • updated 3.3 years ago by Antonio R. Franco • 4.0k
0
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0
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1.8k
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0
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Calculate Allele Frequency from PLINK PED/MAP files
allele frequency snp plink ped map written 3.4 years ago by shahil229.sa • 0
0
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2
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2.9k
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2
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Generate Mapping/Genetic Map Positions From Physical Position In Case Of Soybena Snps
map snp written 5.7 years ago by k2bhide • 70 • updated 3.5 years ago by ice4prince • 10
9
votes
2
answers
1.7k
views
6 follow
2
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NGS mapper that supports IUPAC reference
iupac map written 3.6 years ago by Marvin • 130
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