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Showing: mapping quality • reset

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Calculate average mapping quality at a position

mapping quality mpileup written 7 months ago by hpapoli • 70 • updated 7 months ago by Gabriel R. • 2.6k

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2.6k

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BWA-mem MAPQ Calculation

mq bwa-mem mapping quality mapq alignment written 2.7 years ago by rfriedman22 • 40 • updated 8 months ago by h.mon ♦ 24k

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484

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which indel to consider

exome mapping quality indel calls cigar value written 21 months ago by Kritika • 260 • updated 21 months ago by Pierre Lindenbaum ♦ 117k

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How to select aligned reads below certain mapping Quality (from BWA)?

alignment samtools mapping quality bam bwa written 2.5 years ago by kirannbishwa01 • 950

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3.8k

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All the reads aligned using STAR have low mapping quality (0-3). What is happening?

alignment mapping quality bwa star written 2.6 years ago by kirannbishwa01 • 950

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What is the difference between the "match score", the mapping quality score under the tmap mapping pipeline

mapping quality match score tmap alignment score written 3.3 years ago by BioinfoNovice • 90 • updated 3.3 years ago by RamRS ♦ 20k

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Why does BWA give different Mapping Quality to identical reads?

alignment mapping quality bwa written 3.9 years ago by Asdp • 40 • updated 3.9 years ago by matted ♦ 7.0k

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Samtools : what is threshold for the mapping quality?

next-gen samtools mapping quality snp written 4.2 years ago by Govardhan Anande • 130 • updated 4.2 years ago by Biostar ♦♦ 20

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Remove both pair end reads with low mapping quality using Samtools

mapping quality samtools written 4.3 years ago by DVA • 500 • updated 4.3 years ago by Devon Ryan ♦ 88k

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