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2
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Can BWA-MEM MAPQ Score = 70?
software error bwa-mem phred mapq written 29 days ago by Saha.Neiladri0 • updated 29 days ago by Istvan Albert ♦♦ 85k
4
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168
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Reads mapped with zero quality still mapped to exactly one position
mq mapping quality mapq bwa written 11 weeks ago by bataloffv20 • updated 11 weeks ago by Istvan Albert ♦♦ 85k
4
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145
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Is MAPQ score related to Phred quality score?
mapq phred quality score written 3 months ago by dpc150 • updated 3 months ago by Jeremy Leipzig19k
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176
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0
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0
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225
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1
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.bam mpileup mapping quality
samtools mapq mpileup sanger fastq written 13 months ago by saar.armon0 • updated 13 months ago by jkbonfield400
8
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2.7k
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1
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0
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1.2k
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mpileup mapping quality
samtools mapq written 2.2 years ago by hpapoli90 • updated 2.2 years ago by Kevin Blighe66k
4
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0
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BWA-mem MAPQ Calculation
mq bwa-mem mapping quality mapq alignment written 4.3 years ago by rfriedman2240 • updated 2.3 years ago by h.mon31k
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1
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difference between mapq=0 and samtools flag 0x900
samtools mapq written 2.3 years ago by bitpir190 • updated 2.3 years ago by Devon Ryan97k
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bowtie2 : different MAPQ if -k is set
bowtie2 mapq written 3.0 years ago by Nicolas Rosewick9.2k • updated 3.0 years ago by h.mon31k
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7 follow
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MAPQ filtering for clinical applications
mapq clinical ngs written 3.1 years ago by Kevin Blighe66k • updated 3.1 years ago by d-cameron2.2k
3
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1.2k
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1
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Mapping Quality of reads with mismatches in STAR
rnaseq star mapq written 3.3 years ago by grant.hovhannisyan2.0k • updated 3.3 years ago by Devon Ryan97k
1
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1
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Structural Variation Discovery: Delly's Output
sv mapq delly written 3.7 years ago by novice990 • updated 3.3 years ago by trausch1.5k
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Increase the fifth column ( MAPQ) value in Sam file
mapq alignment sam sequencing written 3.3 years ago by madhu.912440 • updated 3.3 years ago by novice990
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2
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2.7k
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2
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5
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1
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2.1k
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1
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Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
tophat samstat mapq written 5.2 years ago by tiago2112871.2k • updated 5.2 years ago by geek_y11k
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2
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0
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4
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1.8k
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0
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RNA-seq reads mapping to paralogs with high MAPQ. How to ensure this?
bwa mapq rna-seq paralogs written 6.0 years ago by biotech540 • updated 6.0 years ago by Devon Ryan97k
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2
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Is correct finding unique reads with the flag -F 0x104?
flag bowtie2 mapq bwa rna-seq written 6.2 years ago by miquinhap0 • updated 6.2 years ago by David Fredman1.0k
2
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How to compute MAPQ distribution with Rsamtools
mapq rsamtools bam file written 6.5 years ago by Nicola Casiraghi450 • updated 6.5 years ago by Devon Ryan97k
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