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Mapssembler2_extend Compilation Error

mapsembler written 3 months ago by aurebg • 0 • updated 3 months ago by genomax ♦ 54k

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Tool: Mapsembler2 targeted micro assembly and visualization of the local assembly graph

assembly next-gen tool minia mapsembler written 4.0 years ago by pierre.peterlongo • 820 • updated 3.6 years ago by shelkmike • 70

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Recent Replies

C: Efficiently aligning a lot of reads on the same small reference sequence by cedric.stroobandt • 0
The data is indeed fastq format. I was mainly wondering if there existed specific alignment meth...
C: Deseq2: What is the most correct experimental design for this experiment? by Devon Ryan ♦ 82k
I must have misunderstood at some point, I though you were interested in CD40 status. Yes, if you...
C: Question about the output of hicexplorer hicPCA by Devon Ryan ♦ 82k
The sign in PCA is arbitrary, you'll get opposite signs randomly depending on how exactly the PCA...
A: Easier Method to Make a Bioinformatics Pipeline Available on the Web by Devon Ryan ♦ 82k
The only commonly used tool like this is Galaxy, for which you simply write an XML wrapper for ea...
C: Did anyone manage to successfully run HLAScan and get results? by Shiqi Li • 0
But I don't know why get relatively output? And have you met similar problem?
A: which gap filler do you recommend? by k.kathirvel93 • 70
I would recommend Genome finishing module from CLCGenomicsworkbench. Go with trail version if yo...
C: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kristin Muench • 280
Regarding when to use SVA - thanks, helpful to have an example for how it is deployed. I think I'...
C: Very low unique mapped reads - STAR alignment by junsionglow • 20
Hi h.mon, it worked wonderfully, now I have over 80% unique maps! thanks again!
C: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kristin Muench • 280
Thank you so much for your detailed answer! I'll address different parts of your post in unique c...
C: Alignment with BWA and SAMtools by finswimmer ♦ 4.4k
Hello Shello, now we are back to the questions I asked at the very [beginning][1]. And: What kin...
C: How many reads should I expect for paired end reads when coverage = 30 million? by Eric Lim • 870
It's most likely 15M per end, which is on the low end. As reads can be of varying lengths, I pref...
A: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kevin Blighe ♦ 26k
The starting point to any RNA-seq experiment should be a well-designed study that negates the nee...

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