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Mapssembler2_extend Compilation Error

mapsembler written 13 months ago by aurebg • 0 • updated 6 months ago by Jforment • 0

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Tool: Mapsembler2 targeted micro assembly and visualization of the local assembly graph

assembly next-gen tool minia mapsembler written 4.8 years ago by pierre.peterlongo • 840 • updated 4.4 years ago by shelkmike • 130

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Recent Replies

C: ORF reading in Python by jrj.healey ♦ 12k
At a quick glance you may need to show us more of the script, where these functions are actually ...
C: Removing homozygous reference genotypes from vcf file by seta • 1.2k
Sorry, I forgot to mention the vcf file is multisample with about 1200 individuals. So, the above...
C: ORF reading in Python by Michael Dondrup ♦ 46k
1. Please format your code properly using the code formatting options 2. Make your life easier ...
C: Biomart Bioconductor - Retrieving All Entrezgenes Of Hsapiens_Gene_Ensembl by Kevin Blighe ♦ 43k
You just have to play around with the parameters for a while: Get all genes for current release ...
C: DeSeq2 error correction and experiment design by ab • 0
Actually I tried to used the airway package with my data and I think it was not the correct way. ...
C: DeSeq2 error correction and experiment design by ab • 0
Thanks genomax for the suggestion and I will follow it.
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time? by m.t.lorenc • 0
Could you please provide an example?
C: How to create alignment of UTR's for use in TargetScan? by jon.brate • 220
Hey, No, haven't done any more on this yet. But I guess what I will do is to run OrthoFinder or s...
C: How do I find the same gene in two different assemblies? by Geparada • 1.4k
I also think generating your own chain files and use liftOver is a good shoot. Otherwise, extract...
C: DeSeq2 error correction and experiment design by ATpoint ♦ 17k
If you copy/paste the code from the manual that shows the process with the example data, you'll g...
C: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time? by Devon Ryan ♦ 90k
hisat2 may not set an `XS` flag, for it you can filter for MAPQ > 3.
C: Long read alignment by Geparada • 1.4k
But BWA would be useful only for DNA sequencing, right? For RNA-seq I guess STAR would work nicer.

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