Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: markduplicates • reset
or   Classic search
<prev • 50 results • page 1 of 2 • next >
19
votes
1
answer
663
views
1
answer
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 7 weeks ago by Charlotte.Herzeel • 130
1
vote
1
answer
100
views
1
answer
Warning in GATK Picard MarkDuplicates
variant calling gatk picard markduplicates written 6 days ago by Mehulsharma.253 • 10 • updated 6 days ago by Pierre Lindenbaum ♦ 115k
7
votes
1
answer
1.2k
views
1
answer
Is there an authoritative source for optional BAM tags?
duplicates picard markduplicates bam written 2.8 years ago by John ♦ 12k • updated 12 weeks ago by RamRS ♦ 19k
6
votes
1
answer
300
views
1
answer
How to interpret the "Matrics" file of MarkDuplicates (Picard)
picard markduplicates written 3 months ago by ravipatel4 • 10
2
votes
1
answer
307
views
1
answer
GATK MarkDuplicates output and bam
gatk markduplicates written 4 months ago by cmccabe • 170 • updated 4 months ago by finswimmer ♦ 8.0k
3
votes
1
answer
369
views
1
answer
Mark duplicates PICARD error: Unable to access jarfile 'MarkDuplicates.jar' with commandline/with R dupRadar package
picard markduplicates rna-seq written 5 months ago by salamandra • 180
0
votes
2
answers
451
views
2
answers
Picard MarkDuplicates flag vs remove issue
duplicates picard atac-seq markduplicates written 6 months ago by s1469060 • 10 • updated 6 months ago by prakash • 530
2
votes
1
answer
1.0k
views
1
answer
Picard Mark Duplicates
picard markduplicates written 7 months ago by Varun Gupta • 1.1k • updated 6 months ago by marcela.uliano • 50
2
votes
1
answer
448
views
1
answer
Picard MarkDuplicates fatal error
picard markduplicates written 9 months ago by fwuffy • 50 • updated 9 months ago by h.mon ♦ 21k
5
votes
1
answer
3.0k
views
1
answer
Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 6.1 years ago by Pierre Lindenbaum ♦ 115k • updated 13 months ago by Biostar ♦♦ 20
1
vote
1
answer
2.1k
views
1
answer
Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
duplicates picard markduplicates bam written 6.2 years ago by ian.streeter • 10 • updated 18 months ago by Biostar ♦♦ 20
2
votes
1
answer
1.1k
views
1
answer
Split the bam file by chromosome and speed up picard Markduplicates
next-gen alignment markduplicates sequencing written 19 months ago by lghust2011 • 80 • updated 19 months ago by Pierre Lindenbaum ♦ 115k
3
votes
0
answers
805
views
0
answers
picard MarkDuplicates find EOF problem
eof markduplicates written 19 months ago by victoria_aleks • 30
0
votes
1
answer
638
views
1
answer
Questions about LB field in SAM specification for PCR duplicate removal
sam markduplicates written 20 months ago by James Ashmore • 2.5k
1
vote
0
answers
823
views
0
answers
Picard: Value was put into PairInfoMap more than once. Even bwa enabled -M
next-gen picard markduplicates bwa written 21 months ago by pentiumy • 10 • updated 21 months ago by Pierre Lindenbaum ♦ 115k
1
vote
1
answer
1.3k
views
1
answer
Error in picard tool: Mark Duplicates
software error sam-input picard markduplicates written 22 months ago by jcanitz • 0 • updated 22 months ago by dariober ♦ 9.7k
3
votes
0
answers
894
views
0
answers
Picard MarkDuplicates stuck at Traversing read pair information and detecting duplicates
picard markduplicates bam written 22 months ago by 14134125465346445 • 3.4k
3
votes
1
answer
2.0k
views
1
answer
Picard Markduplicates output
next-gen picard markduplicates written 2.6 years ago by VasGene • 10 • updated 2.6 years ago by Amitm • 1.6k
0
votes
2
answers
3.0k
views
2
answers
Picard MarkDuplicates error: Value was put into PairInfoMap more than once
bedtools picard samtools markduplicates written 2.8 years ago by nbhardwaj • 110 • updated 2.7 years ago by Peter Georgeson • 0
4
votes
1
answer
1.9k
views
1
answer
Problem using PicardTools MarkDuplicates: Value Was Put Into Pairinfomap More Than Once
pairinfomap picard picardtools markduplicates written 2.7 years ago by anp375 • 140 • updated 2.7 years ago by Matt Shirley ♦ 8.7k
1
vote
0
answers
3.3k
views
0
answers
MarkDuplicates memory issue
alignment picard markduplicates written 2.9 years ago by cacampbell • 40
2
votes
2
answers
2.8k
views
2
answers
Mark duplicates for single end reads: Why only 5'end?
read duplicates 5' 3'end markduplicates written 3.6 years ago by dariober ♦ 9.7k
4
votes
0
answers
1.2k
views
0
answers
Is there software that takes advantage of MarkedDuplicates for SNP calling?
gatk markduplicates snp consensus sequence written 3.7 years ago by shuelga • 20
16
votes
4
answers
2.6k
views
14 follow
4
answers
sam/bam file handling -> new tools?
bam sort markduplicates sam written 3.7 years ago by Richard • 550 • updated 3.7 years ago by lh3 ♦ 31k
2
votes
1
answer
1.7k
views
1
answer
How does samblaster use library tag information if at all?
markduplicates samblaster written 4.2 years ago by Carlos Borroto • 1.8k • updated 3.8 years ago by gf4ea • 30
9
votes
1
answer
4.5k
views
5 follow
1
answer
Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
picard samtools markduplicates bam sort written 4.6 years ago by Jordan • 1.1k • updated 4.0 years ago by 1013002214 • 0
9
votes
2
answers
11k
views
2
answers
Markduplicates: Value Was Put Into Pairinfomap More Than Once
picard markduplicates written 5.9 years ago by lifuqiang0611 • 20 • updated 4.0 years ago by karl.stamm ♦ 3.4k
5
votes
2
answers
2.3k
views
2
answers
markDuplicates: Histogram not produced
picard markduplicates written 4.2 years ago by dariober ♦ 9.7k
5
votes
1
answer
3.3k
views
1
answer
Picard MarkDuplicates error after using bamaddrg: "bin field of BAM record does not equal value computed..."
picard markduplicates sam validation error written 4.3 years ago by Mark Ebbert • 70 • updated 4.3 years ago by lomereiter • 430
13
votes
3
answers
3.1k
views
7 follow
3
answers
Tool to unmark duplicates
picardtools samtools markduplicates pcr duplicates written 4.4 years ago by Mark Ebbert • 70 • updated 4.4 years ago by Pierre Lindenbaum ♦ 115k
<prev • 50 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United States, just now
  • Barcelona, Spain, just now
  • United States, 3 minutes ago
  • United Kingdom, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1615 users visited in the last hour