Showing: markduplicatesreset
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39
votes
3
answers
25k
views
9 follow
3
answers
Samtools + Picard Markduplicates
consensus samtools picard variant markduplicates written 9.0 years ago by Nery130 • updated 9.0 years ago by lh331k
4
votes
1
answer
5.3k
views
1
answer
Picard Markduplicates
picard markduplicates written 8.4 years ago by Nanada70 • updated 8.4 years ago by Drio910
11
votes
2
answers
9.9k
views
7 follow
2
answers
Improving Performance Of Picard For Markduplicates
picard samtools markduplicates written 8.4 years ago by Brett Mccann80 • updated 8.4 years ago by Louis Letourneau800
9
votes
1
answer
10k
views
1
answer
Library Duplicates Vs. Optical Duplicates (Picard Markduplicates)
picard markduplicates bam written 8.2 years ago by toni2.1k • updated 5.9 years ago by Biostar ♦♦ 20
9
votes
1
answer
13k
views
1
answer
What Is Pcr Duplicates Of Ngs?
duplicates markduplicates written 7.9 years ago by Bioscientist1.7k • updated 7.9 years ago by Alex Paciorkowski3.3k
25
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2
answers
13k
views
15 follow
2
answers
3
votes
2
answers
3.0k
views
2
answers
Markduplicates Error
next-gen picard markduplicates sequencing written 7.7 years ago by Leandro Batista100 • updated 6.5 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.5k
views
1
answer
Adapters Vs Pcr Fragments
illumina pcr adaptor markduplicates written 7.7 years ago by ric100 • updated 7.4 years ago by Istvan Albert ♦♦ 81k
0
votes
1
answer
1.5k
views
1
answer
Order Of Realignment/Markduplicates/Recalibration
gatk markduplicates written 7.3 years ago by Wen.Huang1.2k • updated 7.3 years ago by Andreas2.4k
1
vote
1
answer
2.5k
views
1
answer
Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
duplicates picard markduplicates bam written 7.2 years ago by ian.streeter10 • updated 2.5 years ago by Biostar ♦♦ 20
5
votes
1
answer
3.4k
views
1
answer
Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 7.1 years ago by Pierre Lindenbaum124k • updated 2.1 years ago by Biostar ♦♦ 20
9
votes
2
answers
12k
views
2
answers
Markduplicates: Value Was Put Into Pairinfomap More Than Once
picard markduplicates written 6.9 years ago by lifuqiang061120 • updated 5.0 years ago by karl.stamm3.5k
1
vote
3
answers
7.0k
views
5 follow
3
answers
Picard Markduplicates Error: Requested Array Size Exceeds Vm Limit
picard markduplicates written 6.5 years ago by xiaoyanli820 • updated 6.5 years ago by Jordan1.1k
2
votes
1
answer
3.5k
views
1
answer
Marking Duplicates With Molecular Tag (Umi)
markduplicates index written 6.5 years ago by brentp23k • updated 6.5 years ago by Pierre Lindenbaum124k
1
vote
1
answer
2.7k
views
1
answer
Picard Tools Markduplicates 'No Group 1' Error
tools picard markduplicates error written 6.5 years ago by bruce.moran660 • updated 6.5 years ago by Pierre Lindenbaum124k
6
votes
1
answer
2.6k
views
1
answer
Should You Remove Clonal Read (Picard Mark Duplicates) Before Chipseq Peak Calling?
chipseq markduplicates written 6.4 years ago by William4.5k • updated 6.4 years ago by KCC4.0k
8
votes
3
answers
4.3k
views
7 follow
3
answers
2
votes
3
answers
4.3k
views
3
answers
Picard Mark Duplicate Reads In Galaxy
picard galaxy markduplicates written 6.2 years ago by Tonyzeng300 • updated 6.2 years ago by boris10
2
votes
1
answer
3.5k
views
1
answer
Markduplicates Creating A Loss Of Mate Pair
exome gatk ngs markduplicates written 6.1 years ago by Dan Gaston7.1k • updated 6.1 years ago by Pierre Lindenbaum124k
20
votes
2
answers
15k
views
10 follow
2
answers
Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.1 years ago by geek_y10k • updated 4 weeks ago by Nitha10
0
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0
answers
1.6k
views
0
answers
9
votes
1
answer
5.2k
views
5 follow
1
answer
9
votes
1
answer
2.6k
views
1
answer
Will Picard MarkDuplicates also un-mark duplicates?
duplicates ngs picard markduplicates bam written 5.5 years ago by Chris Miller21k • updated 5.5 years ago by Pierre Lindenbaum124k
10
votes
1
answer
6.6k
views
1
answer
13
votes
3
answers
3.6k
views
7 follow
3
answers
Tool to unmark duplicates
picardtools samtools markduplicates pcr duplicates written 5.4 years ago by Mark Ebbert70 • updated 5.4 years ago by Pierre Lindenbaum124k
5
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1
answer
3.8k
views
1
answer
5
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2
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2.8k
views
2
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2
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1
answer
2.0k
views
1
answer
How does samblaster use library tag information if at all?
markduplicates samblaster written 5.1 years ago by Carlos Borroto1.9k • updated 4.8 years ago by gf4ea30
16
votes
4
answers
3.0k
views
14 follow
4
answers
sam/bam file handling -> new tools?
bam sort markduplicates sam written 4.7 years ago by Richard570 • updated 4.7 years ago by lh331k
4
votes
0
answers
1.4k
views
0
answers
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