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42
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3
answers
27k
views
11 follow
3
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Samtools + Picard Markduplicates
consensus samtools picard variant markduplicates written 9.8 years ago by Nery150 • updated 9.8 years ago by lh332k
5
votes
1
answer
5.9k
views
1
answer
Picard Markduplicates
picard markduplicates written 9.2 years ago by Nanada70 • updated 9.2 years ago by Drio920
11
votes
2
answers
10k
views
7 follow
2
answers
Improving Performance Of Picard For Markduplicates
picard samtools markduplicates written 9.2 years ago by Brett Mccann80 • updated 9.2 years ago by Louis Letourneau810
9
votes
1
answer
11k
views
1
answer
Library Duplicates Vs. Optical Duplicates (Picard Markduplicates)
picard markduplicates bam written 9.0 years ago by toni2.2k • updated 6.7 years ago by Biostar ♦♦ 20
9
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1
answer
14k
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1
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What Is Pcr Duplicates Of Ngs?
duplicates markduplicates written 8.7 years ago by Bioscientist1.7k • updated 4 months ago by Biostar ♦♦ 20
29
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2
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15k
views
15 follow
2
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3
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2
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3.2k
views
2
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Markduplicates Error
next-gen picard markduplicates sequencing written 8.5 years ago by Leandro Batista100 • updated 7.3 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.7k
views
1
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Adapters Vs Pcr Fragments
illumina pcr adaptor markduplicates written 8.4 years ago by ric100 • updated 8.1 years ago by Istvan Albert ♦♦ 84k
0
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1
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1.7k
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1
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Order Of Realignment/Markduplicates/Recalibration
gatk markduplicates written 8.1 years ago by Wen.Huang1.2k • updated 8.1 years ago by Andreas2.5k
1
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1
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2.7k
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1
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Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
duplicates picard markduplicates bam written 8.0 years ago by ian.streeter10 • updated 3.3 years ago by Biostar ♦♦ 20
5
votes
1
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3.7k
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1
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 7.8 years ago by Pierre Lindenbaum130k • updated 2.9 years ago by Biostar ♦♦ 20
9
votes
2
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13k
views
5 follow
2
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Markduplicates: Value Was Put Into Pairinfomap More Than Once
picard markduplicates written 7.7 years ago by lifuqiang061120 • updated 5.8 years ago by karl.stamm3.8k
1
vote
3
answers
7.4k
views
5 follow
3
answers
Picard Markduplicates Error: Requested Array Size Exceeds Vm Limit
picard markduplicates written 7.3 years ago by xiaoyanli820 • updated 7.3 years ago by Jordan1.2k
2
votes
1
answer
3.8k
views
1
answer
Marking Duplicates With Molecular Tag (Umi)
markduplicates index written 7.3 years ago by brentp23k • updated 7.3 years ago by Pierre Lindenbaum130k
1
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1
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2.9k
views
1
answer
Picard Tools Markduplicates 'No Group 1' Error
tools picard markduplicates error written 7.2 years ago by bruce.moran860 • updated 7.2 years ago by Pierre Lindenbaum130k
7
votes
1
answer
2.8k
views
6 follow
1
answer
Should You Remove Clonal Read (Picard Mark Duplicates) Before Chipseq Peak Calling?
chipseq markduplicates written 7.1 years ago by William4.7k • updated 7.1 years ago by KCC4.0k
8
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3
answers
4.6k
views
7 follow
3
answers
2
votes
3
answers
4.7k
views
3
answers
Picard Mark Duplicate Reads In Galaxy
picard galaxy markduplicates written 7.0 years ago by Tonyzeng300 • updated 6.9 years ago by boris10
2
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1
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3.7k
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1
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Markduplicates Creating A Loss Of Mate Pair
exome gatk ngs markduplicates written 6.9 years ago by DG7.1k • updated 6.9 years ago by Pierre Lindenbaum130k
22
votes
2
answers
17k
views
13 follow
2
answers
Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.9 years ago by geek_y11k • updated 10 months ago by Nitha10
0
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0
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1.7k
views
0
answers
9
votes
1
answer
5.7k
views
5 follow
1
answer
9
votes
1
answer
2.8k
views
1
answer
Will Picard MarkDuplicates also un-mark duplicates?
duplicates ngs picard markduplicates bam written 6.3 years ago by Chris Miller21k • updated 6.3 years ago by Pierre Lindenbaum130k
14
votes
1
answer
7.5k
views
6 follow
1
answer
13
votes
3
answers
4.1k
views
7 follow
3
answers
Tool to unmark duplicates
picardtools samtools markduplicates pcr duplicates written 6.2 years ago by Mark Ebbert90 • updated 6.2 years ago by Pierre Lindenbaum130k
5
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1
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4.0k
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1
answer
5
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2
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3.1k
views
2
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2
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1
answer
2.2k
views
1
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How does samblaster use library tag information if at all?
markduplicates samblaster written 5.9 years ago by Carlos Borroto1.9k • updated 5.5 years ago by gf4ea30
16
votes
4
answers
3.3k
views
14 follow
4
answers
sam/bam file handling -> new tools?
bam sort markduplicates sam written 5.5 years ago by Richard570 • updated 5.5 years ago by lh332k
4
votes
0
answers
1.5k
views
0
answers
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