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42
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3
answers
27k
views
11 follow
3
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Samtools + Picard Markduplicates
consensus samtools picard variant markduplicates written 9.8 years ago by Nery150 • updated 9.8 years ago by lh332k
22
votes
2
answers
17k
views
13 follow
2
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Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.9 years ago by geek_y11k • updated 10 months ago by Nitha10
29
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2
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15k
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15 follow
2
answers
9
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1
answer
14k
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1
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What Is Pcr Duplicates Of Ngs?
duplicates markduplicates written 8.7 years ago by Bioscientist1.7k • updated 4 months ago by Biostar ♦♦ 20
9
votes
2
answers
13k
views
5 follow
2
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Markduplicates: Value Was Put Into Pairinfomap More Than Once
picard markduplicates written 7.7 years ago by lifuqiang061120 • updated 5.8 years ago by karl.stamm3.8k
9
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1
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11k
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1
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Library Duplicates Vs. Optical Duplicates (Picard Markduplicates)
picard markduplicates bam written 9.0 years ago by toni2.2k • updated 6.7 years ago by Biostar ♦♦ 20
11
votes
2
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10k
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7 follow
2
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Improving Performance Of Picard For Markduplicates
picard samtools markduplicates written 9.2 years ago by Brett Mccann80 • updated 9.2 years ago by Louis Letourneau810
14
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1
answer
7.5k
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6 follow
1
answer
1
vote
3
answers
7.4k
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5 follow
3
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Picard Markduplicates Error: Requested Array Size Exceeds Vm Limit
picard markduplicates written 7.3 years ago by xiaoyanli820 • updated 7.3 years ago by Jordan1.2k
1
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0
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5.9k
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0
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5
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1
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5.9k
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1
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Picard Markduplicates
picard markduplicates written 9.2 years ago by Nanada70 • updated 9.2 years ago by Drio920
9
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1
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5.7k
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5 follow
1
answer
2
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3
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4.7k
views
3
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Picard Mark Duplicate Reads In Galaxy
picard galaxy markduplicates written 7.0 years ago by Tonyzeng300 • updated 6.9 years ago by boris10
8
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3
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4.6k
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7 follow
3
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0
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2
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4.2k
views
2
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13
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3
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4.1k
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7 follow
3
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Tool to unmark duplicates
picardtools samtools markduplicates pcr duplicates written 6.2 years ago by Mark Ebbert90 • updated 6.2 years ago by Pierre Lindenbaum130k
5
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1
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4.0k
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1
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2
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2
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4.0k
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2
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3
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1
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3.9k
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1
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Picard Markduplicates output
next-gen picard markduplicates written 4.3 years ago by VasGene20 • updated 4.3 years ago by Amitm1.9k
2
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1
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3.8k
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1
answer
Marking Duplicates With Molecular Tag (Umi)
markduplicates index written 7.3 years ago by brentp23k • updated 7.3 years ago by Pierre Lindenbaum130k
2
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1
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3.7k
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1
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Markduplicates Creating A Loss Of Mate Pair
exome gatk ngs markduplicates written 6.9 years ago by DG7.1k • updated 6.9 years ago by Pierre Lindenbaum130k
5
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1
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3.7k
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1
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 7.8 years ago by Pierre Lindenbaum130k • updated 2.9 years ago by Biostar ♦♦ 20
16
votes
4
answers
3.3k
views
14 follow
4
answers
sam/bam file handling -> new tools?
bam sort markduplicates sam written 5.5 years ago by Richard570 • updated 5.5 years ago by lh332k
2
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1
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3.2k
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1
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Picard Mark Duplicates
picard markduplicates written 2.4 years ago by Varun Gupta1.1k • updated 2.3 years ago by marcela.uliano60
3
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2
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3.2k
views
2
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Markduplicates Error
next-gen picard markduplicates sequencing written 8.5 years ago by Leandro Batista100 • updated 7.3 years ago by Biostar ♦♦ 20
5
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2
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3.1k
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2
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1
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1
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2.9k
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1
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Picard Tools Markduplicates 'No Group 1' Error
tools picard markduplicates error written 7.2 years ago by bruce.moran860 • updated 7.2 years ago by Pierre Lindenbaum130k
9
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1
answer
2.8k
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1
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Will Picard MarkDuplicates also un-mark duplicates?
duplicates ngs picard markduplicates bam written 6.3 years ago by Chris Miller21k • updated 6.3 years ago by Pierre Lindenbaum130k
7
votes
1
answer
2.8k
views
6 follow
1
answer
Should You Remove Clonal Read (Picard Mark Duplicates) Before Chipseq Peak Calling?
chipseq markduplicates written 7.1 years ago by William4.7k • updated 7.1 years ago by KCC4.0k
4
votes
1
answer
2.7k
views
1
answer
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