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Log-transformation, coefficient of variation, standard error and mass-spectrometry based proteomics

log-transformation mass-spectrometry written 17 hours ago by jobbe.goossens • 0

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236

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Is there a way to perform GO enrichment including the number of times the same protein was found with different peptides?

peptides go enrichment analysis mass-spectrometry written 10 months ago by nitrushina • 0

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298

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Corrections of the peak areas of C13 isotopes of mass-spectrometry data using ICT package

c13 mass-spectrometry ict package written 14 months ago by DanielC • 100

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680

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Is there no way to bypass the Windows requirement for working with Thermo RAW files

proteomics mass-spectrometry ms/ms written 16 months ago by uki • 20 • updated 15 months ago by mobiusklein • 160

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567

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Error: Sieve v.2.2 (Label-free mass spectrometery differential analysis) - Index bounds outside the array

lfq mass-spectrometry thermo - sieve v2.2 lc-ms/ms written 17 months ago by Ramaraj K • 0 • updated 17 months ago by Biostar ♦♦ 20

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1.3k

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Predict tissue origin by protein expression

protein mass-spectrometry written 5.2 years ago by Vova Naumov • 220 • updated 5.2 years ago by Laurent • 1.6k

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Recent Replies

C: VEP not returning gnomAD AF by michal.inbar • 0
Thanks! 1) Does this mean it is suspected by dbSNP for being a false positive variant in the gnom...
C: makeblastdb with fasta error: BLAST options error by Michael Dondrup ♦ 47k
Using only the first sequence entry seems already enough to reproduce the problem.
A: Create a heatmap by Morteza Hadizadeh • 20
I am sorry for the delay in replying, Thanks so much for your valuable answers.
C: VEP not returning gnomAD AF by manuel.belmadani • 1.2k
You could try [wAnnovar][1] which seems to work for that variant. [1]: http://wannovar.wglab....
A: VEP not returning gnomAD AF by Ben_Ensembl • 1.1k
Hi Michal, This variant is listed as suspect by dbSNP: http://grch37.ensembl.org/Homo_sapiens/Va...
A: How to rename multiple fastq files by ENK • 0
Thank you all for your suggestions. I used that of Mensur and it work just fine. Much appreciated.
C: How to rename multiple fastq files by ENK • 0
Hi! Mensur. Thank you. I tried your code and worked well giving; NBS0_1700_1_R1.fastq NBS0_1700_1...
C: PCR duplicates and sequence duplicates by ATpoint ♦ 29k
Check that column right of your post. Plenty of PCR duplicate-related posts there.
C: The Tophta2 ERR, [ERRno 2] by AsoInfo • 280
Please have a look at the following question: https://www.biostars.org/p/42792/ Try using the o...
C: Merge VCF file by devarora • 50
Thank you Pierre for the suggestion. I only have 70-80 samples and running in GVCF mode for each ...
C: How to pass arguments in a bash script to perform read alignment to the referenc by Joe ♦ 16k
Why are you using `sudo` here? You've given that script admin privileges and that is **not** a s...
A: Merge VCF file by Pierre Lindenbaum ♦ 126k
> which resulted in vcf file for each samples you should call HaplotypCaller for all your ba...

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