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Is there a way to perform GO enrichment including the number of times the same protein was found with different peptides?

peptides go enrichment analysis mass-spectrometry written 3 months ago by nitrushina • 0

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221

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Corrections of the peak areas of C13 isotopes of mass-spectrometry data using ICT package

c13 mass-spectrometry ict package written 7 months ago by DanielC • 90

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393

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Is there no way to bypass the Windows requirement for working with Thermo RAW files

proteomics mass-spectrometry ms/ms written 9 months ago by uki • 20 • updated 8 months ago by mobiusklein • 160

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386

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Error: Sieve v.2.2 (Label-free mass spectrometery differential analysis) - Index bounds outside the array

lfq mass-spectrometry thermo - sieve v2.2 lc-ms/ms written 10 months ago by Ramaraj K • 0 • updated 10 months ago by Biostar ♦♦ 20

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Predict tissue origin by protein expression

protein mass-spectrometry written 4.7 years ago by Vova Naumov • 220 • updated 4.7 years ago by Laurent • 1.6k

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Recent Replies

A: Alternate of WEGO (Web Gene Ontology Annotation Plotting) by y.wang • 0
Hey Rajesh, Could you tell me how to prepare the input files for wego and how to start with wego?...
C: Help making a blast database with longer sequence IDs by genomax ♦ 69k
As you see above original question has protein sequences. Looking at your command it looks like y...
C: Mapping of novel peptide by genomax ♦ 69k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
A: Mapping of novel peptide by jahanshanzida • 0
Yes, this is a follow-up question.I have got two peptide by PGA bioconductor in R.These are : VF...
C: How to draw a chromosome graph with only selected genes marked in it by RamRS ♦ 22k
Have you looked at [karyoploteR](https://bioconductor.org/packages/release/bioc/vignettes/karyopl...
C: Plot multiple R empricial distributions with different X axis on the same plot by RamRS ♦ 22k
Please use the formatting bar (especially the `code` option) to present your post better. You can...
C: Processing Raw Nanopore Data by colindaven • 1.6k
Try : guppy_basecaller --print_workflows I get a lot of different workflows. Eg. # high ac...
C: Should I generate a new Index genome in STAR for 50 base reads instead of 100 ba by caggtaagtat • 650
It also states, that the ideal step, however, would be to recalculate. So, since it doesn't take ...
C: snpEFF job stucks without any error by RamRS ♦ 22k
As MatthewP says, do not add an answer unless you're answering the top level question. I've moved...
C: Should I generate a new Index genome in STAR for 50 base reads instead of 100 ba by Devon Ryan ♦ 91k
The quote from the manual contradicts that recalculating the STAR index is likely to be very useful.
C: Plot multiple R empricial distributions with different X axis on the same plot by maxime.policarpo • 80
Hi, Thanks for your answer, but this will create an unique x-axis for all my vectors. I think I ...
C: RNAseq - how to find novel transcripts in under different treatment using string by jingjin2203 • 40
Thanks a lot for your help! Really appreciated it! Just wanted to make sure I understand everyth...

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