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Corrections of the peak areas of C13 isotopes of mass-spectrometry data using ICT package

c13 mass-spectrometry ict package written 6 days ago by DK • 70

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138

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Is there no way to bypass the Windows requirement for working with Thermo RAW files

proteomics mass-spectrometry ms/ms written 9 weeks ago by uki • 20 • updated 7 weeks ago by mobiusklein • 160

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Error: Sieve v.2.2 (Label-free mass spectrometery differential analysis) - Index bounds outside the array

lfq mass-spectrometry thermo - sieve v2.2 lc-ms/ms written 3 months ago by Ramaraj K • 0 • updated 3 months ago by Biostar ♦♦ 20

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Predict tissue origin by protein expression

protein mass-spectrometry written 4.1 years ago by Vova Naumov • 220 • updated 4.1 years ago by Laurent • 1.6k

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Librarian to Kevin Blighe ♦ 33k
Appreciated to Pierre Lindenbaum ♦ 115k

Recent Replies

C: How to find the relationship between gene expression data of various group? by ishackm • 20
Thanks a lot, Kevin once again. Its much clearer now.
C: How to find the relationship between gene expression data of various group? by Kevin Blighe ♦ 33k
Sure, there are many plots to explore: - histograms of expression data (the distribution should...
C: How to find the relationship between gene expression data of various group? by ishackm • 20
Thanks a lot, Kevin. Is it also possible to visualise the relationship with this data also?
C: Windows batch cmd for fastq-dump by genomax ♦ 59k
Have you considered downloading on a different machine and then moving the data to this one, if y...
C: BBMap randomreads.sh exact path to ref error: Could not find or load main class by genomax ♦ 59k
Have you moved any of the folder contents after downloading BBMap suite?
A: How to find the relationship between gene expression data of various group? by Kevin Blighe ♦ 33k
Here are some practical steps to help you on your journey: 1. From the main GEO accession page...
C: Windows batch cmd for fastq-dump by rrbutleriii • 10
Wouldn't you believe the silliness of the situation, this machine also only has Internet Explorer...
A: How to retrieve sets of protein sequences? by piyushjo • 80
Ensemble biomart. It takes any sort of id: Refseq, HGNC, or just gene name. http://useast.ensembl...
C: BBMap randomreads.sh exact path to ref error: Could not find or load main class by Tawny • 120
@genomax I had tried running randomreads.sh as well using this command: [cmp07 sh]$ ./rand...
C: BBMap randomreads.sh exact path to ref error: Could not find or load main class by genomax ♦ 59k
If you are not using this program on WIndows, I suggest that you just use `randomreads.sh` the wr...
A: How to retrieve sets of protein sequences? by genomax ♦ 59k
Simplest solution may be to use NCBI's unix utils. Pass in your ID's (example below are UniProt I...
C: k mer analysis by genomax ♦ 59k
If your aim is to do *de novo* assmebly then definitely look at Supernova which is 10x's assemble...

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