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12
votes
2
answers
145
views
9 follow
2
answers
Compare two matrix
perl matrix written 11 days ago by Amy • 0 • updated 11 days ago by Paul • 600
0
votes
0
answers
74
views
0
answers
How to fill in missing fields on a VCF to convert into a genotype matrix?
vcf matrix snps bcf genotype written 22 days ago by jespinoz • 0
3
votes
2
answers
187
views
5 follow
2
answers
How to calculate log scores from an alignment?
log matrix alignment scores written 10 weeks ago by jordidebruin • 0 • updated 10 weeks ago by a.zielezinski ♦ 7.0k
0
votes
0
answers
112
views
0
answers
Calculating LD between specific alleles even if they are not the minor alleles
calculation matrix linkage disequilibrium written 11 weeks ago by Vincent Laufer • 850
1
vote
1
answer
166
views
1
answer
How to create an AffyBatch object using a data matrix?
matrix affy affybatch written 12 weeks ago by komal.rathi • 2.9k
2
votes
1
answer
185
views
1
answer
How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 3 months ago by JimiOli • 0 • updated 3 months ago by Carlo Yague • 2.9k
1
vote
1
answer
246
views
1
answer
bwtool matrix error - invalid signed integer
software error matrix bwtool written 4 months ago by rbronste • 110
0
votes
0
answers
231
views
0
answers
compare rows of colData and count Matrix
dexseq matrix deseq written 5 months ago by Assa Yeroslaviz • 1.1k
0
votes
0
answers
308
views
0
answers
How to transform rectangular matrix in Newick tree with java
matrix java programming written 8 months ago by Roxane Boyer • 220
0
votes
2
answers
354
views
2
answers
BLOSUM scores compared to PAM scores
matrix blosum pam scores written 9 months ago by Mathis • 0 • updated 9 months ago by natasha.sernova • 2.4k
0
votes
0
answers
269
views
0
answers
comparing log2 of allelic-imbalance (converted to Z-score) of different cancer types
matrix z-score ase matlab rna-seq written 9 months ago by skillzthakillz4 • 0
2
votes
3
answers
515
views
3
answers
Software for plotting gene presence absence matrix
R accessory genes python matrix written 10 months ago by natasha • 70 • updated 10 months ago by Philipp Bayer ♦ 4.3k
15
votes
3
answers
794
views
3
answers
how to retrieve specific raws from a data matrix based on Affymetrix ID in Linux
matrix affymetrix linux written 2.4 years ago by Mo • 780
0
votes
0
answers
383
views
0
answers
Score matrix including pairwise distances from 3 groups: find out whether differences are significant
matrix statistics scoring significance test written 13 months ago by Tim • 0
14
votes
5
answers
3.4k
views
7 follow
5
answers
Looking For Information On Hi-C (Chromosome Conformation Capture) Analysis: Workflows, Best Practices
matrix written 4.4 years ago by cheater149 • 60 • updated 16 months ago by Anton Goloborodko • 240
1
vote
1
answer
537
views
1
answer
Error with combining samples into matrix using abundance_estimates_to_matrix.pl
matrix de edger rna-seq written 16 months ago by nikelle.petrillo • 70
0
votes
2
answers
904
views
2
answers
heatmap for a predetermined order of rows
matrix ordered written 17 months ago by kanwarjag • 750 • updated 17 months ago by dally • 140
0
votes
1
answer
1.6k
views
1
answer
Newick To Distance Matrix
matrix newick tree distance written 3.2 years ago by Haluk • 160 • updated 18 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.1k
views
1
answer
Calculating weights for a Cluster matrix
matrix R written 22 months ago by pbio • 120 • updated 18 months ago by Lando Ringel • 480
1
vote
1
answer
378
views
1
answer
Extracting sequences from frequency matrix
matrix sequence motif written 19 months ago by giroudpaul • 50 • updated 19 months ago by Jimbou • 560
0
votes
1
answer
533
views
1
answer
MG-RAST API - Problem with space characters in gene names at URL
matrix api myposts abundance mg-rast written 21 months ago by fibar • 50
4
votes
2
answers
4.3k
views
2
answers
Position Weight Matrix in R or Python
matrix pwm peptide written 2.9 years ago by esantosh10 • 20 • updated 20 months ago by kamil_cygan • 10
1
vote
1
answer
1.6k
views
1
answer
Quantile normalization in huge matrices
R big-data matrix written 20 months ago by yogacacarolom • 40
2
votes
1
answer
839
views
1
answer
Binding several large matrices by column
R big-data matrix written 21 months ago by yogacacarolom • 40 • updated 21 months ago by Pierre Lindenbaum ♦ 95k
8
votes
0
answers
719
views
0
answers
error in rstudio
matrix rstudio csv myposts written 22 months ago by F • 2.6k
0
votes
1
answer
1.4k
views
1
answer
Cluto Clustering Algorithm - 3D Matrix Input File
matrix format file written 4.7 years ago by kajendiran56 • 120 • updated 22 months ago by Jean-Karim Heriche ♦ 11k
7
votes
1
answer
653
views
1
answer
PCA for three dimensional features (or for 3 matrices)
matrix pca R written 22 months ago by pbio • 120 • updated 22 months ago by Jean-Karim Heriche ♦ 11k
0
votes
0
answers
935
views
0
answers
Similarity matrix calculation of a manual sequence alignment
similarity score sequence manual matrix written 23 months ago by sriosazu • 0
6
votes
1
answer
941
views
1
answer
Formatting genotype matrix for imputation
impute2 matrix plink genotype written 23 months ago by Alexander Skates • 280 • updated 23 months ago by Endre Bakken Stovner • 800
0
votes
0
answers
880
views
0
answers
How to build similarity matrix in WGCNA?
software error wgcna matrix R written 2.1 years ago by madkitty • 500
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