md simulation Posts

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288

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"Atomtype O not found" error in gromacs 5.1.1

md simulation gromacs written 5 months ago by SS • 0

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602

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GROMACS fatal error

md simulation gromacs written 15 months ago by amitunited0532 • 10

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470

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Need to know the importance of prediction

md simulation structure prediction written 18 months ago by sakshisingh.bioinfo • 30 • updated 18 months ago by WouterDeCoster ♦ 40k

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818

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MD simulation using YASARA

md simulation written 2.5 years ago by sakshisingh.bioinfo • 30

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1.0k

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how much time should i run MD simulation to check stability of predicted structure?

md simulation written 3.0 years ago by rajeshkumar_vinod • 30

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733

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Lipid Nanoparticle Interaction- MD Simulation

lipid nanoparticle interaction md simulation written 3.1 years ago by Zaved Hazarika • 0

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849

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Unexpected Molecular Dynamics results

md simulation written 4.0 years ago by f.dehghanian68 • 30

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Recent Replies

A: lncRNA and circular RNA identification softwares by Rituriya • 30
For lncRNA only, if it helps anyone, I am planning to try out softwares discussed in following th...
C: INTERNATIONAL ORGANISATION FOR STANDARDISATION ORGANISATION INTERNATIONALE DE NO by WouterDeCoster ♦ 40k
What is the link between the title and the content? Also, this looks a lot like spam. You may wa...
C: How to handle several measurements of the same gene on one DNA microarray? by patelk26 • 30
Hi Fabienne, I deal with similar issue, of having multiple expression measurements for a single g...
C: How to extract promoter sequences from a plant draft genome? by natasha.sernova • 3.6k
Many thanks, dear colleagues!
C: How to extract promoter sequences from a plant draft genome? by Dineshkumar K • 10
Thank you @rimgubaev
C: What is the difference between tissues and cell lines in ENCODE> by Friederike ♦ 5.1k
If the origin of the cells is of great importance, you'll definitely have to double check with th...
C: How to extract promoter sequences from a plant draft genome? by rimgubaev • 140
I faced the same problem around year ago working with Nicotiana tabacum genome (annotated scaffol...
C: What does gene coordinates "CHR_MG117_PATCH:108783796-108806337"mean? by qicaibiology • 20
Thank you for your help, your answer and the answer above help me a lot
C: What does gene coordinates "CHR_MG117_PATCH:108783796-108806337"mean? by qicaibiology • 20
Thank you for your reply! I understand now
A: Calculate p-value for experiment group with replicates, while control group with by Nicolas Rosewick ♦ 8.1k
From DESeq2 vignette : http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESe...
C: dUTP sequencing -- different strand-ratios for different samples by genomax ♦ 71k
Yes it is. I will delete my post above so this exchange will not be visible to normal users.
C: dUTP sequencing -- different strand-ratios for different samples by mschmid • 90
Thank you. I guess it is fine now?