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Illumina 450K quality controls with meffil

ewas snp meffil written 17 months ago by uxue33 • 20

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Illumina EPIC methylation analysis with meffil

R methylation illumina epic meffil written 2.7 years ago by gunnhelenmoen • 0 • updated 2.6 years ago by Biostar ♦♦ 20

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Recent Replies

A: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ S by bigmawen • 380
Greyman, Thanks for reporting the issue. As mentioned in the post, we just made some major upda...
C: Replace fasta Header witha a matching text by Optimist • 160
This worked Thanks a ton
A: Replace fasta Header witha a matching text by GenoMax ♦ 96k
$ more test.fa >name1 ATGCATGCAT >name2 AGCTAGC $ more names ...
C: Replace fasta Header witha a matching text by tshtatland • 80
Does this answer your question? [Renaming fasta headers according to a matching name list](https:...
C: Replace fasta Header witha a matching text by Optimist • 160
I want to know what command can be used to achieve the purpose. It can be seqkit or anything else
C: Error while running the transcript count file obtained using StringTie on DeSeq2 by GenoMax ♦ 96k
Please post galaxy specific questions to their help forum for prompt response: https://help.galax...
C: Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis by Kevin Blighe ♦ 71k
Hi, I think that the same idea applies but that you just use a different formula? The above metho...
C: Replace fasta Header witha a matching text by GenoMax ♦ 96k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
A: Isoform detection of a gene using RNAseq by vinishavvenugopal • 0
I have a follow up question. What can I infer with a splice junction depth of 1? If the goal is ...
C: Deseq2 library load error by krushnach80 • 900
levels=c("H","L")) > library(DESeq2) Loading required package:...
A: Chip-Seq Data Analysis by prgrmmr70 • 0
How we can count the number of peaks /coverage in a ChIP-seq data? (bigWig files)
C: Renaming fasta headers according to a matching name list by Optimist • 160
I want to replace orf05188 with geneA

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