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1
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Scale cores down when close to memory limit snakemake/nextflow
pipeline cores memory written 19 days ago by gb • 1.2k
29
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2
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3.3k
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8 follow
2
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Peer-Reviewed Justification For Big Ass Servers.
server memory written 7.6 years ago by Yannick Wurm • 2.3k • updated 7 weeks ago by Biostar ♦♦ 20
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0
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230
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0
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How does bbduk calculate it's memory requirements?
bbduk docker memory written 5 months ago by Lina F • 160
11
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4
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6 follow
4
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 8.5 years ago by 2184687-1231-83- • 5.0k • updated 6 months ago by Biostar ♦♦ 20
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1
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1
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How to increase cytoscape memory?
cytoscape memory written 5.4 years ago by Omid • 560 • updated 13 months ago by Biostar ♦♦ 20
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2.4k
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How to solve error memory R package pedigree
software error R pedigree memory written 16 months ago by Kian • 40
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1.1k
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0
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BWA. Allocate memory
next-gen alignment memory bwa sequencing written 16 months ago by windsur • 20
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1
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1.6k
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1
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Running Beagle for imputation
beagle imputation memory written 18 months ago by nour.hadjz • 0 • updated 18 months ago by zx8754 ♦ 8.3k
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5.1k
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 2.3 years ago by Lina F • 160 • updated 2.3 years ago by h.mon ♦ 28k
6
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1
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7 follow
1
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memory consumption of bwa-mem
bwa-mem ram mapping memory written 2.7 years ago by Lars • 680 • updated 2.7 years ago by d-cameron • 2.1k
0
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871
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storage space for BAM files in the cloud, on the server, Galaxy or GenomeSpace
mega-files cloud memory storage written 3.1 years ago by Robert_Weinberg • 0 • updated 3.1 years ago by Biostar ♦♦ 20
3
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2
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956
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about computer memory and mpileup files
varscan2 memory snp written 3.1 years ago by Bogdan • 880 • updated 3.1 years ago by karl.stamm ♦ 3.5k
8
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3
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7.8k
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7 follow
3
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How To Solve An Out-Of-Memory Error When Using Usearch Chimera Detection
memory written 7.0 years ago by upendrakumar.devisetty • 360 • updated 3.1 years ago by Simply Bioinformatics • 150
1
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1
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990
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1
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Malloc_error_break and job termination while running Kallisto
kallisto rna-seq memory written 3.3 years ago by MagnumOpus • 0
2
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1
answer
2.0k
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1
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Running out of memory in R
genie3 R memory myposts written 3.8 years ago by Amir Hajian • 40
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1
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2.2k
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1
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samtools mpileup memory leakage
variant calling samtools bcftools memory mpileup written 3.8 years ago by lkw222 • 30 • updated 3.8 years ago by John Marshall ♦ 1.8k
0
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1
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2.1k
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Problems with BLAST db, maybe install issue?
software error install memory blast written 3.9 years ago by sstevens2 • 0 • updated 3.9 years ago by satshil.r • 50
3
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3
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4.1k
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3
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FASTQC and PacBio reads
java memory pacbio fastqc written 4.1 years ago by tptacek3050 • 60 • updated 4.1 years ago by mjhsieh • 0
17
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5
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4.9k
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7 follow
5
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Is Blast+ Running As Fast As It Could ?
memory blast written 7.8 years ago by Amr • 140 • updated 4.1 years ago by Manoj • 30
1
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1
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1.9k
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1
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How to estimate peak memory usage of SOAPdenovo
assembly soapdenovo memory written 4.4 years ago by billzt • 20 • updated 4.4 years ago by Brian Bushnell ♦ 16k
18
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5
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14k
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5 follow
5
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Processing Fastq Files In R/Bioconductor Without Reading Entire Files Into Memory?
R bioconductor fastq memory written 9.0 years ago by Ryan Thompson • 3.4k
1
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4.1k
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0
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bwa mem failed to allocate memory
bwa-mem allocate memory bwa written 4.8 years ago by cmo • 60
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3
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1.5k
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5 follow
3
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Blastn Runtime 606 Queries
memory blast written 8.2 years ago by W Langdon • 30 • updated 4.8 years ago by Biostar ♦♦ 20
7
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3
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7.5k
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7 follow
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Convert Fasta Alignment To Phylip In Constant Memory
fasta alignment memory written 7.0 years ago by xapple • 230 • updated 4.9 years ago by zeeefa • 90
3
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3
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2.0k
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Problem with minia and bad_alloc, low memory limits?
memory minia bad_alloc written 5.4 years ago by jorgegiacomelli • 10
2
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1
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1.5k
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1
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How To Use Perl To Input A Large Ngs Data File?
perl memory written 5.9 years ago by sanchezcavani • 210 • updated 5.9 years ago by Istvan Albert ♦♦ 81k
4
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1
answer
2.1k
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1
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Emboss Needle Algorithm'S Memory Usage Increases When I Run Many Processes Of It One After Another
python alignment memory written 6.0 years ago by TabeaH • 30 • updated 6.0 years ago by Asaf ♦ 6.4k
4
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1
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1.5k
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1
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Does Running Velvet With Gzipped Files Reduce Memory Usage?
memory velvet written 6.1 years ago by johnstantongeddes • 410 • updated 6.0 years ago by Biostar ♦♦ 20
2
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1
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2.6k
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5 follow
1
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Memory Problems Running Gatk Printreads
memory written 6.4 years ago by ajc8 • 120
2
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1
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2.4k
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1
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Realignertargetcreator Error: Not Enough Memory
gatk memory written 6.4 years ago by xiaoyanli82 • 0
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