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6
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1
answer
348
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7 follow
1
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memory consumption of bwa-mem
bwa-mem ram mapping memory written 3 months ago by Lars • 430 • updated 3 months ago by d-cameron • 740
0
votes
0
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306
views
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storage space for BAM files in the cloud, on the server, Galaxy or GenomeSpace
mega-files cloud memory storage written 9 months ago by Robert_Weinberg • 0 • updated 8 months ago by Biostar ♦♦ 20
3
votes
2
answers
324
views
2
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about computer memory and mpileup files
varscan2 memory snp written 9 months ago by Bogdan • 250 • updated 9 months ago by karl.stamm ♦ 3.1k
8
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3
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5.4k
views
7 follow
3
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How To Solve An Out-Of-Memory Error When Using Usearch Chimera Detection
memory written 4.6 years ago by upendrakumar.devisetty • 340 • updated 9 months ago by amir.shams84 • 20
1
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1
answer
350
views
1
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Malloc_error_break and job termination while running Kallisto
kallisto rna-seq memory written 11 months ago by MagnumOpus • 0
2
votes
1
answer
1.7k
views
1
answer
How to increase cytoscape memory?
cytoscape memory written 3.0 years ago by Omid • 450 • updated 16 months ago by Biostar ♦♦ 20
2
votes
1
answer
870
views
1
answer
Running out of memory in R
genie3 R memory myposts written 17 months ago by Amir Hajian • 40
2
votes
1
answer
1.0k
views
1
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samtools mpileup memory leakage
variant calling samtools bcftools memory mpileup written 17 months ago by lkw222 • 20 • updated 17 months ago by John Marshall • 1.0k
0
votes
1
answer
930
views
1
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Problems with BLAST db, maybe install issue?
software error install memory blast written 18 months ago by sstevens2 • 0 • updated 18 months ago by satshil.r • 40
2
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3
answers
1.5k
views
3
answers
FASTQC and PacBio reads
java memory pacbio fastqc written 20 months ago by tptacek3050 • 50 • updated 20 months ago by mjhsieh • 0
17
votes
5
answers
3.1k
views
7 follow
5
answers
Is Blast+ Running As Fast As It Could ?
memory blast written 5.4 years ago by Amr • 140 • updated 21 months ago by Manoj • 20
1
vote
1
answer
1.1k
views
1
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How to estimate peak memory usage of SOAPdenovo
assembly soapdenovo memory written 2.0 years ago by billzt • 20 • updated 2.0 years ago by Brian Bushnell ♦ 12k
18
votes
5
answers
9.8k
views
5 follow
5
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Processing Fastq Files In R/Bioconductor Without Reading Entire Files Into Memory?
R bioconductor fastq memory written 6.6 years ago by Ryan Thompson • 3.2k
0
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0
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2.0k
views
0
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bwa mem failed to allocate memory
bwa-mem allocate memory bwa written 2.4 years ago by cmo • 30
4
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3
answers
1.0k
views
5 follow
3
answers
Blastn Runtime 606 Queries
memory blast written 5.8 years ago by W Langdon • 30 • updated 2.5 years ago by Biostar ♦♦ 20
7
votes
3
answers
5.4k
views
7 follow
3
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Convert Fasta Alignment To Phylip In Constant Memory
fasta alignment memory written 4.6 years ago by xapple • 230 • updated 2.6 years ago by zeeefa • 80
3
votes
3
answers
1.2k
views
3
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Problem with minia and bad_alloc, low memory limits?
memory minia bad_alloc written 3.0 years ago by jorgegiacomelli • 10
2
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1
answer
943
views
1
answer
How To Use Perl To Input A Large Ngs Data File?
perl memory written 3.5 years ago by sanchezcavani • 210 • updated 3.5 years ago by Istvan Albert ♦♦ 71k
4
votes
1
answer
1.5k
views
1
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Emboss Needle Algorithm'S Memory Usage Increases When I Run Many Processes Of It One After Another
python alignment memory written 3.6 years ago by TabeaH • 30 • updated 3.6 years ago by Asaf ♦ 4.1k
4
votes
1
answer
1.0k
views
1
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Does Running Velvet With Gzipped Files Reduce Memory Usage?
memory velvet written 3.7 years ago by johnstantongeddes • 370 • updated 3.7 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.6k
views
5 follow
1
answer
Memory Problems Running Gatk Printreads
memory written 4.0 years ago by ajc8 • 100
27
votes
2
answers
2.6k
views
8 follow
2
answers
Peer-Reviewed Justification For Big Ass Servers.
server memory written 5.3 years ago by Yannick Wurm • 2.2k • updated 4.0 years ago by Jeremy Leipzig ♦ 17k
2
votes
1
answer
1.6k
views
1
answer
Realignertargetcreator Error: Not Enough Memory
gatk memory written 4.0 years ago by xiaoyanli82 • 0
5
votes
2
answers
4.8k
views
2
answers
Tophat Time And Memory Requirement
tophat memory rna-seq written 5.3 years ago by Nicolas Rosewick • 5.0k • updated 4.9 years ago by Malachi Griffith ♦ 15k
5
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2
answers
2.2k
views
2
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Blast 2.2.24+ Database Error
memory blast written 5.8 years ago by Niek De Klein • 2.3k
2
votes
1
answer
1.7k
views
1
answer
Parallelization Efficiency And Memory Usage Of Abyss, Allpaths-Lg
assembly memory written 5.2 years ago by David M • 520 • updated 5.2 years ago by Sujai Kumar • 210
1
vote
1
answer
987
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1
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Kegg Meta Data Download - Out Of Memory Because Of Data Size
java kegg memory written 5.2 years ago by Siva Kumar • 30 • updated 5.2 years ago by Lars Juhl Jensen ♦ 10k
9
votes
1
answer
1.4k
views
1
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Bioperl: Running Out Of Memory Using Bio::Popgen::Population
perl bioperl memory written 5.4 years ago by Abdel • 300 • updated 5.4 years ago by Zev.Kronenberg ♦ 10k
3
votes
1
answer
1.1k
views
1
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Bwa Bwasw Memory Footprint With Increasing Z Value?
memory bwa written 5.9 years ago by 2184687-1231-83- • 4.8k • updated 5.9 years ago by Alex Paciorkowski ♦ 3.2k
11
votes
4
answers
1.9k
views
6 follow
4
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 6.1 years ago by 2184687-1231-83- • 4.8k • updated 6.1 years ago by Geparada • 1.2k
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