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Alternative to PGDSpider for vcf conversion
vcf next-gen snp conversion memory written 4 months ago by QPaps04 • 0 • updated 25 days ago by jpr6mg • 0
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104
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About SVD errors of big matrix
R memory svd written 5 weeks ago by Eric Wang • 30
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2
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211
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2
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single cell RNA analysis
scrna-seq sctransform memory seurat written 8 weeks ago by re_raz • 0
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1
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7.4k
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1
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 3.1 years ago by Lina F • 180 • updated 6 weeks ago by carisdak • 0
2
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0
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166
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0
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Qualimap out of memory
qualimap qc memory rna-seq written 3 months ago by mar77 • 0
3
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1
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197
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1
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java.lang.OutOfMemoryError with SplitsTree4 GUI
splitstree splitstree4 java error memory written 5 months ago by gmeeks328 • 10
3
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1
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351
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1
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How do I know how much memory to use when piping to with BBMap suite (OutOfMemoryError)?
reads java bbmap memory written 9 months ago by O.rka • 210 • updated 9 months ago by h.mon ♦ 31k
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230
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1
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Scale cores down when close to memory limit snakemake/nextflow
pipeline cores memory written 11 months ago by gb • 1.9k
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2
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3.4k
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8 follow
2
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Peer-Reviewed Justification For Big Ass Servers.
server memory written 8.5 years ago by Yannick Wurm • 2.3k • updated 12 months ago by Biostar ♦♦ 20
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478
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How does bbduk calculate it's memory requirements?
bbduk docker memory written 16 months ago by Lina F • 180
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4
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2.7k
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6 follow
4
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Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
assembly memory transcriptome written 9.4 years ago by 2184687-1231-83- • 5.0k • updated 17 months ago by Biostar ♦♦ 20
2
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1
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4.2k
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1
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How to increase cytoscape memory?
cytoscape memory written 6.3 years ago by Omid • 560 • updated 24 months ago by Biostar ♦♦ 20
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4.2k
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How to solve error memory R package pedigree
software error R pedigree memory written 2.2 years ago by Kian • 40
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1.7k
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0
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BWA. Allocate memory
next-gen alignment memory bwa sequencing written 2.2 years ago by windsur • 20
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1
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2.8k
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1
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Running Beagle for imputation
beagle imputation memory written 2.4 years ago by nour.hadjz • 10 • updated 2.4 years ago by zx8754 ♦ 9.6k
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1
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5.2k
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7 follow
1
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memory consumption of bwa-mem
bwa-mem ram mapping memory written 3.5 years ago by Lars • 750 • updated 3.5 years ago by d-cameron • 2.2k
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storage space for BAM files in the cloud, on the server, Galaxy or GenomeSpace
mega-files cloud memory storage written 4.0 years ago by Robert_Weinberg • 0 • updated 3.9 years ago by Biostar ♦♦ 20
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2
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1.1k
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2
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about computer memory and mpileup files
varscan2 memory snp written 4.0 years ago by Bogdan • 1.0k • updated 4.0 years ago by karl.stamm ♦ 3.8k
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3
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8.4k
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7 follow
3
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How To Solve An Out-Of-Memory Error When Using Usearch Chimera Detection
memory written 7.9 years ago by upendrakumar.devisetty • 370 • updated 4.0 years ago by Simply Bioinformatics • 170
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1
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Malloc_error_break and job termination while running Kallisto
kallisto rna-seq memory written 4.2 years ago by MagnumOpus • 0
2
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1
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2.5k
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1
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Running out of memory in R
genie3 R memory myposts written 4.6 years ago by Amir Hajian • 40
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1
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2.5k
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1
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samtools mpileup memory leakage
variant calling samtools bcftools memory mpileup written 4.7 years ago by lkw222 • 30 • updated 4.7 years ago by John Marshall ♦ 2.1k
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2.6k
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Problems with BLAST db, maybe install issue?
software error install memory blast written 4.8 years ago by sstevens2 • 0 • updated 4.8 years ago by satshil.r • 50
4
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3
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4.8k
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3
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FASTQC and PacBio reads
java memory pacbio fastqc written 5.0 years ago by tptacek3050 • 60 • updated 5.0 years ago by mjhsieh • 0
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4
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5.5k
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8 follow
4
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Is Blast+ Running As Fast As It Could ?
memory blast written 8.7 years ago by Amr • 140 • updated 5.0 years ago by Manoj • 80
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2.2k
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1
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How to estimate peak memory usage of SOAPdenovo
assembly soapdenovo memory written 5.3 years ago by billzt • 20 • updated 5.3 years ago by Brian Bushnell ♦ 17k
18
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5
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16k
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5 follow
5
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Processing Fastq Files In R/Bioconductor Without Reading Entire Files Into Memory?
R bioconductor fastq memory written 9.9 years ago by Ryan Thompson • 3.4k
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4.6k
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bwa mem failed to allocate memory
bwa-mem allocate memory bwa written 5.7 years ago by cmo • 60
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3
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1.7k
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5 follow
3
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Blastn Runtime 606 Queries
memory blast written 9.1 years ago by W Langdon • 30 • updated 5.7 years ago by Biostar ♦♦ 20
7
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3
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7.9k
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7 follow
3
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Convert Fasta Alignment To Phylip In Constant Memory
fasta alignment memory written 7.9 years ago by xapple • 230 • updated 5.8 years ago by zeeefa • 90
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