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Showing: metagenome • reset
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Metagenome sequencing vs Bacterial whole genome sequencing protocols
whole gneome bacteria metagenome sequencing written 4 weeks ago by anwesh023 • 10 • updated 26 days ago by tokeemdtareq • 40
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65
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Bacterial mobile elements database
transposons metagenome is written 26 days ago by hed.robin • 20
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91
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How can I pick up reads belongs to one isolates from shotgun metagenome
metagenome written 5 weeks ago by xuling2015 • 10
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1
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135
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Plasmidome recovery from metagenomes: why and how?
plasmid metagenomics metagenome plasmids written 3 months ago by dark.lord • 0 • updated 3 months ago by h.mon ♦ 15k
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510
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Job: early-career bioinformatician opportunity at NIH
microbiome qiime metagenome job dada2 written 4 months ago by shurjo.sen • 10
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1
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337
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1
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Which file can be upload in MG-RAST
assembly metagenome mg-rast written 4 months ago by hafroz01 • 0
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How to download KEGG database for metagenomic analysis?
metagenome kegg sequencing written 8 months ago by anderson.nb6 • 20 • updated 8 months ago by Ram ♦ 15k
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487
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SEED analyses in MEGAN: How to connect Seed database with blast data
megan metagenome blast seed written 10 months ago by Bumble • 0 • updated 8 months ago by Biostar ♦♦ 20
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1
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385
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Can/should Bracken be used with metatranscriptome data?
kraken bracken metagenome metatranscriptome written 9 months ago by kristenbeck527 • 10 • updated 9 months ago by h.mon ♦ 15k
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Microbial diversity analysis using whole-genome metagenomic data
mothur taxonomy metagenome qiime written 10 months ago by elsoja • 20 • updated 10 months ago by Brian Bushnell ♦ 15k
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636
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5 follow
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Tips for increasing metaSPAdes assembly speed for 7 billion reads?
reads assembly metaspades spades metagenome written 10 months ago by anin.gregory • 70
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706
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joining paired end illumina data for metagenomic analysis
illumina 16s paired end metagenome qiime written 13 months ago by cvu • 110
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910
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Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 17 months ago by David • 80
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QIIME OTU-picking: doubles counts or not?
otu-picking metagenome mapping qiime written 17 months ago by lotus28 • 20
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885
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Fungal marker selection
its primers metagenome fungal human microbiome written 2.7 years ago by fatemehsanjar • 0 • updated 18 months ago by Biostar ♦♦ 20
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449
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Metagenome Next Generation Sequencing
genome metagenome metatranscriptome sequencing written 18 months ago by cvu • 110
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Comparison of 16S- & WGS-derived community composition
wgs 16s metagenome microbiome pcr written 19 months ago by lotus28 • 20 • updated 19 months ago by 5heikki ♦ 7.3k
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inconsistency in aligning metagenomic data in Bowtie2
bowtie2 alignment metagenome written 19 months ago by oatirosh • 0
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518
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Getting species counts from Illumina metagenome data
wgs metagenome species composition metaphlan2 written 20 months ago by lotus28 • 20
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2
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585
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Metagenomic Iontorrent reads: filtering and denoising
reads denoise metagenome filtering written 20 months ago by fhsantanna • 410 • updated 20 months ago by sacha • 1.2k
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459
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significant testing for species abundancy
pvalue metagenome abundance written 22 months ago by Prasad • 1.5k
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How to get the abundance of genes in metagenomes from MG RAST
metagenome mg rast abundance written 3.7 years ago by khorms • 30 • updated 2.0 years ago by liuyifan2014 • 40
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Rarefaction curves for OTU Data
otus next-gen metagenome written 2.1 years ago by ricardo.couto • 10 • updated 2.1 years ago by Steven Lakin • 1.4k
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Trimming of 16S reads
trimmomatic sra trimming metagenome 16s written 2.1 years ago by agata88 • 660
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alpha-diversity beta-diversity rarefaction curves
metagenome qiime written 2.1 years ago by agata88 • 660
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Tool: Recycler for plasmid assembly
de novo assembly plasmid metagenome tool assembly graph written 2.2 years ago by Roye Rozov • 90
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Tool for create a phylogenic tree from a spreadsheet with species abundance
genome phylogenetic tree metagenome written 2.2 years ago by nayara • 0
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801
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Method to cluster genes based on gene abundance in metagenomic data
cluster genome annotation metagenome R written 2.3 years ago by nayara • 0 • updated 2.3 years ago by Devon Ryan ♦ 81k
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863
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Sequence read (id) specific kmer frequency calculation
reads kmer sequence metagenome written 2.6 years ago by arif.at.iut • 0
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Compare multiple samples on KEGG
comparison metagenome kegg written 2.9 years ago by zimmlerten • 10 • updated 2.7 years ago by Biostar ♦♦ 20
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