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- A: Expression cutoff for UMI
- A: From a list of RefSeq protein IDs to assembly accessions
- A: Extracting cells only from one condition (Seurat)
- C: Extracting cells only from one condition (Seurat)
- A: BWA-MEM read groups usage
- C: Merging output files from STAR
- A: DESeq2 Error in data.frame(row.names = colnames(countdata), condition) : row nam
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Recent Replies
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C: Extracting cells only from one condition (Seurat) by
V • 200
Worked like a charm, I took out all the cells from the 'Healthy' condition but can now subset aga...
-
C: Merging output files from STAR by
JW • 0
Hi h.mon, you are absolutely right that I am going to be using DESeq2 for my downstream analyses,...
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C: Merging output files from STAR by
JW • 0
Thank you! Quite an easy solution
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A: Expression cutoff for UMI by
i.sudbery ♦ 7.2k
You can easily convert UMI into TPM by summing the UMI counts for all transcripts to get total_co...
-
C: Extracting cells only from one condition (Seurat) by
jared.andrews07 ♦ 5.3k
Try: `test.subset <- subset(x = epithelial, subset = stim == "Healthy")`
-
C: From a list of RefSeq protein IDs to assembly accessions by
genomax ♦ 80k
In light of your comments I have decided to move my answer to a comment since indeed it is not an...
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C: From a list of RefSeq protein IDs to assembly accessions by
vkkodali • 1.8k
Just a couple of points (in addition the answer below): 1. Rather than extracting the organism ...
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A: From a list of RefSeq protein IDs to assembly accessions by
vkkodali • 1.8k
> start from a list of protein accessions (i.e. WP_xxx) and get a correspondent list of assemb...
-
C: DESeq2 Error in data.frame(row.names = colnames(countdata), condition) : row nam by
suvratha • 40
thank you, this fixed it!
-
C: Abyss error: duplicate ID by
lieven.sterck ♦ 7.2k
not 100% sure but the np parameter points to the number of threads it's gonna use, not necessaril...
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C: How to extract a fasta sequence from a batch of multiple fasta genome files by
ATpoint ♦ 31k
Please add example data and desired output. What did you try and where are the problems?
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Thanks for the feedback Michael. I would recommend citing the book by title and URL. The majorit...
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