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Job: Associate Principal Investigator, Bioinformatics (1604)
next-generation sequencing metagenomics job written 24 days ago by tonya.stefanic • 70
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5 follow
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viral metagenomics classification: MINIMUM number of viral reads (cutoff) to consider a sample positive
metagenomics classification ngs written 11 days ago by Mania • 0
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memory allocation in metaSpades
assembly metagenomics spades ram written 14 days ago by Maorkn • 0 • updated 14 days ago by genomax ♦ 91k
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antismash 5.0 (New region concept) - counting BGCs
metagenomics antismash written 24 days ago by arshad1292 • 40
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Counting Biosyntheic Gene Clusters (BGC) types from Antismash Output
metagenomics antismash written 25 days ago by arshad1292 • 40
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Open Source Sequence Assembly Programs
software assembly metagenomics open written 9.9 years ago by Monzoor • 300 • updated 27 days ago by Biostar ♦♦ 20
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mapping to incomplete reference
bowtie2 metagenomics alignment mapping written 4 weeks ago by issia • 0 • updated 4 weeks ago by genomax ♦ 91k
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How to normalize between samples in WGS metagenomics
normalization metagenomics shotgun metagenomics written 4 weeks ago by plicht • 0
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Performing so-called "SNP confirmation" for reads assigned to their corresponding Antibiotic Resistance Genes (ARGs): suggestions?
arg reads metagenomics snp megares written 5 weeks ago by Macspider • 3.2k • updated 5 weeks ago by Biostar ♦♦ 20
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Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
bioinformatics metagenomics job postdoc written 5 weeks ago by Medhat ♦ 8.8k
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Tools for metagenomics classification using long reads
metagenomics alignment sequen written 2.5 years ago by Medhat ♦ 8.8k • updated 6 weeks ago by bioinfo17 • 30
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133
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What are the input files for lwaldron / metaphlanToPhyloseq.R ?
R metagenomics metaphlan written 9 weeks ago by c.e.chong • 20 • updated 9 weeks ago by zorbax • 210
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Taxonomic classification of MAGs
genome metagenomics taxonomy binning written 9 weeks ago by c.e.chong • 20 • updated 9 weeks ago by Mensur Dlakic • 7.0k
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What does "assembly-level" classification mean?
classifier classification metagenomics written 10 weeks ago by psun • 0 • updated 10 weeks ago by h.mon ♦ 31k
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Good Books/Resources to learn metagenomic analysis?
assembly metagenomics bacteria long reads nanopore written 10 weeks ago by jimpinney • 10 • updated 10 weeks ago by Mensur Dlakic • 7.0k
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Tools for metagenomic binning for viruses?
viruses metagenomics rna-seq genomics written 10 weeks ago by jaydu • 0 • updated 10 weeks ago by Mensur Dlakic • 7.0k
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Potential Bacteria Contamination - RNA-Seq
metagenomics rna-seq written 12 weeks ago by VHahaut • 1.1k • updated 12 weeks ago by genomax ♦ 91k
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Is there a database or catalog of the proteins secreted through the Type 3 Secretion System available?
metagenomics microbiology written 12 weeks ago by Vincent Laufer • 1.1k
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How to generate Beta diversity boxplot from phyloseq object?
metagenomics beta diversity phyloseq written 3 months ago by dpc • 150
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Better way for speedup of Humann3 metagenomics analysis pipeline?
humann metagenomics alignment pipeline written 3 months ago by boaty • 110 • updated 3 months ago by Biostar ♦♦ 20
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How to find out if contig size is limited by repeats
assembly metagenomics written 3 months ago by lagartija • 90
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Generating taxa-wise unifrac distance Matrix using phyloseq
R metagenomics phyloseq unifrac written 3 months ago by mail2steff • 60
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Density vs gene count plot
wgs metagenomics gene count mgwas written 3 months ago by dpc • 150 • updated 3 months ago by antonioggsousa • 1.5k
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Gene count vs Relative gene abundance
wgs metagenomics written 3 months ago by dpc • 150 • updated 3 months ago by Friederike ♦ 6.3k
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MG RAST for Eukaryota
metagenomics mg-rast kegg eukaryota functions written 3 months ago by TomM • 0
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Significantly different number of reads between two paired files when runing kneaddata
metagenomics kneaddata remove host reads written 5 months ago by zhangdengwei • 130 • updated 3 months ago by Biostar ♦♦ 20
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stacked barplot color choice
R metagenomics 16s phyloseq written 3 months ago by dpc • 150 • updated 3 months ago by antonioggsousa • 1.5k
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Forum: Metagenomics Tutoring Opportunity
metagenomics tutoring forum microbial written 22 months ago by MK2000 • 30 • updated 4 months ago by aftabakhtar654 • 0
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Creating a bed file from a de novo fasta file
bedtools assembly metagenomics written 4 months ago by c.e.chong • 20
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Differential abundance analysis at high taxonomic ranks
differential abundance metagenomics 16s written 4 months ago by Erwann • 10
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