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285

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Metavelvet not producing "meta-velvetg.contigs.fa"

assembly velvet gcc metavelvet written 5 months ago by Vimac • 0 • updated 5 months ago by WouterDeCoster ♦ 22k

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621

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Metavelvet stops at Scaffolding

software error assembly metavelvet written 20 months ago by biotacg • 0

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3.4k

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MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and probably as a part of MetAMOS)

metamos assembly metavelvet pebble resolution written 3.0 years ago by Tim • 110 • updated 2.9 years ago by Anaïs Vittu • 0

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Recent Replies

C: bash and awk code by Kevin Blighe ♦ 3.5k
Pierre is expert at awk too - better than me I think.
C: warning message after HTSeq by WouterDeCoster ♦ 22k
What did you do prior to running htseq count?
C: warning message after HTSeq by BioDH • 0
Sorry. I have changed the title. Yes, that is not DESeq2. I just got the reads using HTSeq mod...
C: Splitting reference genome for alignment by Pierre Lindenbaum ♦ 99k
> I am only interested in aligning DNAseq reads to certain genes what you can do is removing ...
A: Splitting reference genome for alignment by Pierre Lindenbaum ♦ 99k
> for aligning my reads to the resulting 'smaller reference genomes', will it be a good idea? ...
C: warning message after Deseq2 by BioDH • 0
I'm sure that is paired-end data.
C: warning message after Deseq2 by ATPoint • 1.7k
Is it only me that is confused, because DESeq2 is a BioC package. What command are you running th...
A: Generating heatmaps of pre-selected candidate genes after deseq2 by e.rempel • 520
Hi, it is absolutely possible. Have a look at this [tutorial][1]. You could slice the matrix of ...
A: gene expression variance equality by e.rempel • 520
Hi, citation from this [thread][1] (answer from [Gordon Smyth][2] - author of limma): > Uneq...
A: How to sort a VCF file lexicographically by chromosome number? by ATPoint • 1.7k
A solution without any grep: cat in.vcf | awk '$1 ~ /^#/ {print $0;next} {print $0 | "LC_ALL...
C: how to remove Overrepresented sequences for paired end with cutadapt? by Lila M • 370
Thank you very much!
A: Prediction of novel intronic SNP function? by alemam.ahmed • 0
Thanks a lot lessismore for the suggestion. I think I should try to publish it as it is, Especial...

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