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101

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Metavelvet not producing "meta-velvetg.contigs.fa"

assembly velvet gcc metavelvet written 4 weeks ago by Vimac • 0 • updated 4 weeks ago by WouterDeCoster ♦ 18k

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514

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Metavelvet stops at Scaffolding

software error assembly metavelvet written 16 months ago by biotacg • 0

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3.3k

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MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and probably as a part of MetAMOS)

metamos assembly metavelvet pebble resolution written 2.6 years ago by Tim • 110 • updated 2.6 years ago by Anaïs Vittu • 0

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Rising Star to aouichechaimaa • 70
Appreciated to Pierre Lindenbaum ♦ 94k
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Recent Replies

C: How to convince the replication in RNAseq by wonseongsik • 40
Understood... Thank you so much for your clear comments... I've got a lot of clear answers... On...
C: Reads mapping to mir21a in mir-21 Knock-Out mice by gkuffel22 • 20
Pierre, Did you get a chance to look at the SAM record?
C: Paired-read alignment length from BAM/SAM file by genomax ♦ 29k
Sorry! Post above changed to reflect right place. You may need to create a GitHub account (free).
C: why spectral clustering show a warning? by aouichechaimaa • 70
@Rodrigo, what I have to do so? any suggestions!
C: CNVnator error :Can't determine length for 'chr1'. No reference genome specified by chevivien • 50
It's running well now. Thanks
C: How and what are the steps for performing RNAseq Time point analysis 3 biologica by Michael Dondrup ♦ 42k
Another comment: are you sure that your protocol is not strand specific? `-s no -r pos -t exon -f...
C: Paired-read alignment length from BAM/SAM file by Soumitra Pal • 10
But it is a potential bug in BWA not samtools.
C: Paired-read alignment length from BAM/SAM file by Soumitra Pal • 10
Sorry for not trying this earlier. Apparently, 'samtools stats' just uses the TLEN field, as seen...
C: why spectral clustering show a warning? by Rodrigo • 20
Apparently your graph is not connected and IMO the warning is because spectral algorithms for lay...
C: Mapsembler2 targeted micro assembly and visualization of the local assembly grap by pierre.peterlongo • 600
Hey, Thanks for your suggestion. I may do the modification. However, I'm afraid that mapsembler ...
C: How and what are the steps for performing RNAseq Time point analysis 3 biologica by Michael Dondrup ♦ 42k
How does STAR distinguish and group biological and technical replicates? This is an interesting ...
C: Using trimmomatic on multiple paired-end read files by Safa.A • 0
Hi, Thanks for you python script. I am trying to run this script but I have it not running or giv...

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