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3
votes
1
answer
180
views
1
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Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 8 weeks ago by halo22 • 110 • updated 7 weeks ago by Charles Warden ♦ 5.7k
0
votes
0
answers
168
views
0
answers
Error using preprocessNoob (minfi) for processing of Illumina array data
array illumina preprocessnoob minfi written 4 months ago by steffanchristiansen • 0
1
vote
0
answers
308
views
0
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Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
R minfi illumina epic methylation array written 4 months ago by sichan • 70
1
vote
0
answers
265
views
0
answers
Convert "minfi::RGChannelSet" class from OLD to NEW
rgchannelset minfi summarizedexperiment written 11 months ago by Tanvir Ahamed • 270
0
votes
0
answers
412
views
0
answers
Minfi probe filtering
p-value R tools minfi written 12 months ago by niutster • 80
0
votes
1
answer
353
views
1
answer
' The cancer type is not available for this platform.' error using tcgaR package to download DNA methylation data
methylation tcga minfi tcgar written 14 months ago by mohamedrefaat.1.1992 • 0
0
votes
1
answer
884
views
1
answer
Working with Differentially Methylated Regions(DMRs)
dna methylation tcga dmrs minfi written 14 months ago by noorpratap.singh • 110 • updated 14 months ago by Kevin Blighe ♦ 33k
0
votes
1
answer
872
views
1
answer
categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
450k dmrcate hypo mehylated minfi hyper methylated written 19 months ago by rahel14350 • 20
0
votes
0
answers
441
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0
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Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 17 months ago by Ellen O • 10
7
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2
answers
1.1k
views
2
answers
Require review/comments/suggestions on 450k analysis college project
450k methylation minfi cohcap champ written 3.7 years ago by arpit.singh1203 • 60 • updated 18 months ago by allayza_cute • 0
0
votes
1
answer
627
views
1
answer
Density plot parameters in minfi package
minfi density parameter density plot written 18 months ago by niutster • 80 • updated 18 months ago by theobroma22 • 1.1k
0
votes
0
answers
511
views
0
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Error in new version of minfi
software error reading file minfi written 18 months ago by niutster • 80
2
votes
1
answer
1.2k
views
1
answer
minfi pre-processing and normalization
R minfi pre-processing bead-count normalization written 18 months ago by niutster • 80 • updated 18 months ago by andrew.j.skelton73 ♦ 5.4k
0
votes
0
answers
611
views
0
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Minfi bumphunter -value column
bumphunter R minfi written 19 months ago by antmantras • 0
3
votes
1
answer
752
views
1
answer
visualization of DMRcate or minfi output on UCSC
450k dmrcate track hub minfi ucsc written 19 months ago by rahel14350 • 20 • updated 19 months ago by asyavuz • 130
1
vote
0
answers
849
views
0
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how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
450k preprocessfunnorm bmiq rnbeads minfi written 20 months ago by rahel14350 • 20
0
votes
0
answers
633
views
0
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DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
450k dna methylation minfi cnv preprocessfunnorm written 20 months ago by Thomas • 0
0
votes
0
answers
741
views
0
answers
Obtaining beads number from MethylSet (minfi)
450k minfi methylation illumina R written 2.3 years ago by ciemanek • 110
1
vote
0
answers
1.1k
views
0
answers
How to apply preprocessing methods from minfi package on an output file from Genome studio
450k R methylation minfi written 2.3 years ago by halldorbjarni • 10
2
votes
1
answer
787
views
1
answer
identify associated genes with methylation bumps
methylation minfi illumina epic rnbeads champ written 2.5 years ago by weixiaokuan • 80 • updated 2.5 years ago by igor ♦ 7.1k
10
votes
0
answers
3.4k
views
0
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illumina EPIC array support by R packages?
methylation minfi rnbeads champ written 2.5 years ago by weixiaokuan • 80
0
votes
0
answers
721
views
0
answers
"RGChannelSet" constructor function in minfi package
450k bioconductor minfi written 2.7 years ago by Tanvir Ahamed • 270 • updated 2.6 years ago by Biostar ♦♦ 20
0
votes
0
answers
928
views
0
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minfi: delete NA values from RGChannelSet
R minfi written 2.7 years ago by philipp24 • 0 • updated 2.7 years ago by PoGibas ♦ 4.7k
0
votes
0
answers
990
views
0
answers
Error processing Illumina 450K Methylation data using Minfi
minfi bioconductor methylation R written 3.0 years ago by pm2012 • 80
7
votes
2
answers
1.1k
views
2
answers
Memory allocation problems in 450k analysis
R minfi methylation champ written 3.7 years ago by arpit.singh1203 • 60 • updated 3.3 years ago by Shicheng Guo • 7.3k
11
votes
1
answer
1.6k
views
1
answer
Approaches for normalisation of Illumina 450k data with large global differences in methylation
450k minfi methylation written 3.4 years ago by phil.chapman • 70 • updated 3.4 years ago by fortin946 • 180
0
votes
0
answers
990
views
0
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Tool: minfi package: plotBetasByType, GenomicRatioSet-clas
450k minfi methylation tool illumina written 3.7 years ago by kawaguca • 0
5
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2
answers
2.8k
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2
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Infinium/Illumina 450K methylation array data analysis: How to compare the various packages/pipelines?
methylation minfi cohcap rnbeads champ written 3.8 years ago by arpit.singh1203 • 60 • updated 3.8 years ago by Charles Warden ♦ 5.7k
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