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<prev • 37 results • page 1 of 2 • next >
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Methylation Analysis EPIC array
methylation dmrcate gene expression minfi written 6 weeks ago by Will Yam • 10
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query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
R epic array minfi methylation written 12 weeks ago by prasundutta87 • 360
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879
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Error in new version of minfi
software error reading file minfi written 3.2 years ago by niutster • 100 • updated 12 weeks ago by manu • 0
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Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 3.1 years ago by Ellen O • 10 • updated 4 months ago by steffanchristiansen • 0
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112
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using Genome Studio output in minfi
minfi genome studio written 5 months ago by smt8n • 0
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Convert "minfi::RGChannelSet" class from OLD to NEW
rgchannelset minfi summarizedexperiment written 2.6 years ago by Tanvir Ahamed • 290 • updated 6 months ago by said3427 • 90
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Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
R minfi illumina epic methylation array written 2.1 years ago by sichan • 90 • updated 7 months ago by ISB • 10
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Minfi preprocessNoob vs preprocessQuantile normalization for Illumina EPIC array
R bioconductor minfi written 7 months ago by jeni • 20 • updated 7 months ago by zx8754 ♦ 9.4k
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bumphunter for 3 (or more) groups
bumphunter methylation epic array minfi dmr written 16 months ago by alfonsosaera • 20 • updated 9 months ago by Biostar ♦♦ 20
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illumina EPIC array support by R packages?
methylation minfi rnbeads champ written 4.1 years ago by weixiaokuan • 90 • updated 13 months ago by Charles Warden ♦ 7.8k
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Why does minfi impute actual values in place of NULL values when normalizing methylation data?
probes minfi null methylation R written 14 months ago by sbdejene • 0
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How to export with minfi quantile normalized preprocessed 850K methylation data?
R methylation quantile minfi normalization written 14 months ago by sbdejene • 0
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Job: PhD Opportunity - Epigenomics of multiple sclerosis
methylation epigenetics minfi job written 18 months ago by rodney.lea • 20
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609
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Probe filtering beta-values from rgSet
R cpgs dnamarray minfi rgset written 18 months ago by moldach • 130
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Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 22 months ago by halo22 • 150 • updated 22 months ago by Charles Warden ♦ 7.8k
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Error using preprocessNoob (minfi) for processing of Illumina array data
array illumina preprocessnoob minfi written 2.0 years ago by steffanchristiansen • 0
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882
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Minfi probe filtering
p-value R tools minfi written 2.7 years ago by niutster • 100
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' The cancer type is not available for this platform.' error using tcgaR package to download DNA methylation data
methylation tcga minfi tcgar written 2.8 years ago by mohamedrefaat.1.1992 • 0
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Working with Differentially Methylated Regions(DMRs)
dna methylation tcga dmrs minfi written 2.9 years ago by noorpratap.singh • 290 • updated 2.9 years ago by Kevin Blighe ♦ 63k
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categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
450k dmrcate hypo mehylated minfi hyper methylated written 3.2 years ago by rahel14350 • 30
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Require review/comments/suggestions on 450k analysis college project
450k methylation minfi cohcap champ written 5.3 years ago by arpit.singh1203 • 60 • updated 3.1 years ago by allayza_cute • 0
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Density plot parameters in minfi package
minfi density parameter density plot written 3.2 years ago by niutster • 100 • updated 3.2 years ago by theobroma22 • 1.1k
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minfi pre-processing and normalization
R minfi pre-processing bead-count normalization written 3.2 years ago by niutster • 100 • updated 3.2 years ago by andrew.j.skelton73 ♦ 6.0k
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Minfi bumphunter -value column
bumphunter R minfi written 3.2 years ago by antmantras • 0
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visualization of DMRcate or minfi output on UCSC
450k dmrcate track hub minfi ucsc written 3.2 years ago by rahel14350 • 30 • updated 3.2 years ago by asyavuz • 130
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how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
450k preprocessfunnorm bmiq rnbeads minfi written 3.3 years ago by rahel14350 • 30
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DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
450k dna methylation minfi cnv preprocessfunnorm written 3.4 years ago by Thomas • 0
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Obtaining beads number from MethylSet (minfi)
450k minfi methylation illumina R written 3.9 years ago by ciemanek • 140
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How to apply preprocessing methods from minfi package on an output file from Genome studio
450k R methylation minfi written 4.0 years ago by halldorbjarni • 10
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identify associated genes with methylation bumps
methylation minfi illumina epic rnbeads champ written 4.1 years ago by weixiaokuan • 90 • updated 4.1 years ago by igor ♦ 11k
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