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Mixed Illumina Methylation data from EPIC and 450k
dna methylation epigenetics minfi written 6 weeks ago by Nish314 • 0 • updated 16 days ago by Biostar ♦♦ 20
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61
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Minfi's combineArrays returns intersect
450k minfi methylation epic champ written 18 days ago by MoltenLight • 0
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Illumina HumanMethylation - Exclusion Criteria for Poor Quality Samples
epic 450k infinium arrays methylation minfi written 20 days ago by MoltenLight • 0
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286
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Methylation Analysis EPIC array
methylation dmrcate gene expression minfi written 6 months ago by Will Yam • 10
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query regarding using manifest and annotation in Minfi (EPIC Methylation array analysis)
R epic array minfi methylation written 8 months ago by prasundutta87 • 390
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Error in new version of minfi
software error reading file minfi written 3.6 years ago by niutster • 100 • updated 8 months ago by manu • 20
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1
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Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 3.5 years ago by Ellen O • 10 • updated 9 months ago by steffanchristiansen • 0
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167
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using Genome Studio output in minfi
minfi genome studio written 10 months ago by smt8n • 0
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1
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1
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Convert "minfi::RGChannelSet" class from OLD to NEW
rgchannelset minfi summarizedexperiment written 3.0 years ago by Tanvir Ahamed • 290 • updated 12 months ago by said3427 • 100
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5 follow
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Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
R minfi illumina epic methylation array written 2.5 years ago by sichan • 90 • updated 13 months ago by ISB • 10
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Minfi preprocessNoob vs preprocessQuantile normalization for Illumina EPIC array
R bioconductor minfi written 13 months ago by jeni • 30 • updated 13 months ago by zx8754 ♦ 9.9k
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bumphunter for 3 (or more) groups
bumphunter methylation epic array minfi dmr written 21 months ago by alfonsosaera • 20 • updated 14 months ago by Biostar ♦♦ 20
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illumina EPIC array support by R packages?
methylation minfi rnbeads champ written 4.6 years ago by weixiaokuan • 90 • updated 19 months ago by Charles Warden ♦ 8.0k
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Why does minfi impute actual values in place of NULL values when normalizing methylation data?
probes minfi null methylation R written 20 months ago by sbdejene • 0
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871
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How to export with minfi quantile normalized preprocessed 850K methylation data?
R methylation quantile minfi normalization written 20 months ago by sbdejene • 0
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Job: PhD Opportunity - Epigenomics of multiple sclerosis
methylation epigenetics minfi job written 23 months ago by rodney.lea • 20
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787
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Probe filtering beta-values from rgSet
R cpgs dnamarray minfi rgset written 23 months ago by moldach • 130
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1
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Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 2.3 years ago by halo22 • 180 • updated 2.3 years ago by Charles Warden ♦ 8.0k
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776
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Error using preprocessNoob (minfi) for processing of Illumina array data
array illumina preprocessnoob minfi written 2.5 years ago by steffanchristiansen • 0
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1.1k
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Minfi probe filtering
p-value R tools minfi written 3.2 years ago by niutster • 100
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' The cancer type is not available for this platform.' error using tcgaR package to download DNA methylation data
methylation tcga minfi tcgar written 3.3 years ago by mohamedrefaat.1.1992 • 0
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1
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Working with Differentially Methylated Regions(DMRs)
dna methylation tcga dmrs minfi written 3.3 years ago by noorpratap.singh • 300 • updated 3.3 years ago by Kevin Blighe ♦ 69k
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1
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categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
450k dmrcate hypo mehylated minfi hyper methylated written 3.7 years ago by rahel14350 • 30
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2
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2
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Require review/comments/suggestions on 450k analysis college project
450k methylation minfi cohcap champ written 5.8 years ago by arpit.singh1203 • 60 • updated 3.6 years ago by allayza_cute • 0
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1.3k
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Density plot parameters in minfi package
minfi density parameter density plot written 3.6 years ago by niutster • 100 • updated 3.6 years ago by theobroma22 • 1.1k
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2.8k
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1
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minfi pre-processing and normalization
R minfi pre-processing bead-count normalization written 3.6 years ago by niutster • 100 • updated 3.6 years ago by andrew.j.skelton73 ♦ 6.1k
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Minfi bumphunter -value column
bumphunter R minfi written 3.7 years ago by antmantras • 0
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visualization of DMRcate or minfi output on UCSC
450k dmrcate track hub minfi ucsc written 3.7 years ago by rahel14350 • 30 • updated 3.7 years ago by asyavuz • 130
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how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
450k preprocessfunnorm bmiq rnbeads minfi written 3.8 years ago by rahel14350 • 30
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DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
450k dna methylation minfi cnv preprocessfunnorm written 3.8 years ago by Thomas • 0
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