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<prev • 33 results • page 1 of 2 • next >
12
votes
2
answers
4.2k
views
2
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illumina EPIC array support by R packages?
methylation minfi rnbeads champ written 3.1 years ago by weixiaokuan • 90 • updated 22 days ago by Charles Warden ♦ 7.0k
0
votes
1
answer
107
views
1
answer
Why does minfi impute actual values in place of NULL values when normalizing methylation data?
probes minfi null methylation R written 7 weeks ago by sbdejene • 0
0
votes
1
answer
135
views
1
answer
How to export with minfi quantile normalized preprocessed 850K methylation data?
R methylation quantile minfi normalization written 7 weeks ago by sbdejene • 0
0
votes
0
answers
160
views
0
answers
bumphunter for 3 (or more) groups
bumphunter methylation epic array minfi dmr written 3 months ago by alfonsosaera • 0
0
votes
0
answers
363
views
0
answers
Job: PhD Opportunity - Epigenomics of multiple sclerosis
methylation epigenetics minfi job written 5 months ago by rodney.lea • 20
0
votes
0
answers
265
views
0
answers
Probe filtering beta-values from rgSet
R cpgs dnamarray minfi rgset written 5 months ago by moldach • 130
3
votes
1
answer
581
views
1
answer
Reading methylation without IDAT files downloaded from GEO
geo methylation minfi gene expression omnibus written 9 months ago by halo22 • 120 • updated 9 months ago by Charles Warden ♦ 7.0k
0
votes
0
answers
356
views
0
answers
Error using preprocessNoob (minfi) for processing of Illumina array data
array illumina preprocessnoob minfi written 11 months ago by steffanchristiansen • 0
1
vote
0
answers
610
views
0
answers
Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
R minfi illumina epic methylation array written 12 months ago by sichan • 80
1
vote
0
answers
447
views
0
answers
Convert "minfi::RGChannelSet" class from OLD to NEW
rgchannelset minfi summarizedexperiment written 18 months ago by Tanvir Ahamed • 270
0
votes
0
answers
591
views
0
answers
Minfi probe filtering
p-value R tools minfi written 20 months ago by niutster • 80
0
votes
1
answer
492
views
1
answer
' The cancer type is not available for this platform.' error using tcgaR package to download DNA methylation data
methylation tcga minfi tcgar written 21 months ago by mohamedrefaat.1.1992 • 0
0
votes
1
answer
1.3k
views
1
answer
Working with Differentially Methylated Regions(DMRs)
dna methylation tcga dmrs minfi written 22 months ago by noorpratap.singh • 280 • updated 22 months ago by Kevin Blighe ♦ 45k
0
votes
1
answer
1.2k
views
1
answer
categorize DMRs by type (hyper - hypo methilated) in DMRcate or minfi
450k dmrcate hypo mehylated minfi hyper methylated written 2.2 years ago by rahel14350 • 30
0
votes
0
answers
564
views
0
answers
Error when changing the database for minfi dropLociWithSnps
methylationepic minfi illumina snp methylation written 2.0 years ago by Ellen O • 10
7
votes
2
answers
1.2k
views
2
answers
Require review/comments/suggestions on 450k analysis college project
450k methylation minfi cohcap champ written 4.3 years ago by arpit.singh1203 • 60 • updated 2.1 years ago by allayza_cute • 0
0
votes
1
answer
821
views
1
answer
Density plot parameters in minfi package
minfi density parameter density plot written 2.1 years ago by niutster • 80 • updated 2.1 years ago by theobroma22 • 1.1k
0
votes
0
answers
653
views
0
answers
Error in new version of minfi
software error reading file minfi written 2.1 years ago by niutster • 80
2
votes
1
answer
1.7k
views
1
answer
minfi pre-processing and normalization
R minfi pre-processing bead-count normalization written 2.1 years ago by niutster • 80 • updated 2.1 years ago by andrew.j.skelton73 ♦ 5.8k
0
votes
0
answers
797
views
0
answers
Minfi bumphunter -value column
bumphunter R minfi written 2.2 years ago by antmantras • 0
3
votes
1
answer
935
views
1
answer
visualization of DMRcate or minfi output on UCSC
450k dmrcate track hub minfi ucsc written 2.2 years ago by rahel14350 • 30 • updated 2.2 years ago by asyavuz • 130
1
vote
0
answers
1.1k
views
0
answers
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
450k preprocessfunnorm bmiq rnbeads minfi written 2.3 years ago by rahel14350 • 30
0
votes
0
answers
822
views
0
answers
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
450k dna methylation minfi cnv preprocessfunnorm written 2.3 years ago by Thomas • 0
0
votes
0
answers
857
views
0
answers
Obtaining beads number from MethylSet (minfi)
450k minfi methylation illumina R written 2.9 years ago by ciemanek • 110
1
vote
0
answers
1.4k
views
0
answers
How to apply preprocessing methods from minfi package on an output file from Genome studio
450k R methylation minfi written 2.9 years ago by halldorbjarni • 10
2
votes
1
answer
982
views
1
answer
identify associated genes with methylation bumps
methylation minfi illumina epic rnbeads champ written 3.1 years ago by weixiaokuan • 90 • updated 3.1 years ago by igor ♦ 7.9k
0
votes
0
answers
818
views
0
answers
"RGChannelSet" constructor function in minfi package
450k bioconductor minfi written 3.3 years ago by Tanvir Ahamed • 270 • updated 3.2 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.1k
views
0
answers
minfi: delete NA values from RGChannelSet
R minfi written 3.3 years ago by philipp24 • 0 • updated 3.3 years ago by PoGibas ♦ 4.8k
0
votes
0
answers
1.2k
views
0
answers
Error processing Illumina 450K Methylation data using Minfi
minfi bioconductor methylation R written 3.6 years ago by pm2012 • 80
7
votes
2
answers
1.2k
views
2
answers
Memory allocation problems in 450k analysis
R minfi methylation champ written 4.3 years ago by arpit.singh1203 • 60 • updated 3.9 years ago by Shicheng Guo • 7.6k
<prev • 33 results • page 1 of 2 • next >
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