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Answer: BBtools bug in reporting the number of substitutions in the console output, it s
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A: What is the difference between mpileup samtools and bcftools?
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
Answer: Genotypes in vcf files
Answer: Tools or R / Python packages to perfom ML models
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Hi I know it was more than a year, but I'll just leave the answer here maybe it will help someone. With the modified code of yours, th…
Answer: BBtools bug in reporting the number of substitutions in the console output, it s
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You can use a tool like vt peek to summarize variant stats once you have got to a vcf etc. https://genome.sph.umich.edu/wiki/Vt
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How about you define what you actually want to do and which question you want to answer. "ML" is a broad and unspecific term.
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Thank you for your answer, it helps me to solve this error.
Answer: BBtools bug in reporting the number of substitutions in the console output, it s
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The rates are for the variants that were called (not total bases). If you add up the percentages you get 100%; if you add up the counts it …
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I it was available then you would see entries there. Still, be aware that this is raw sequencing data, so it's not just a list of miRNAs. C…
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