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Recent Replies
Answer: Getting Intron Positions from Amino Acid Sequences
by
fafad046
•
0
Do you happen to know why sometimes my Entrez direct command gives no output at all?
I installed Entrez direct using the commands listed…
Comment: Getting Intron Positions from Amino Acid Sequences
by
fafad046
•
0
Do you happen to know why sometimes my Entrez direct command gives no output at all?
I installed Entrez direct using the commands listed o…
Comment: Diffbind dba.count doesn't give FRiP score
by
gyspace
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0
I found your email in https://bioinfotraining.bio.cam.ac.uk/staff/rory-stark-phd, is the email right? I sent a google drive link to you. If…
Comment: how can i filter a sam file from a paf file
by
colindaven
4.7k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic
by
GenoMax
127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all
by
Sofia
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0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB)
by
michelafrancesconi9
•
0
Can you explain me better? Because for the NRF I do :
a) samtools view -c .bam
b)samtools view -c -F 260 .bam
then b/a
and as a bam fi…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
▴
40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python
by
moshi
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110
Please install Biopython with v1.80 or higher.
If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data
by
Dion
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0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python
by
karenkvn
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40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R
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Eliza
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@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
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Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic
by
antoine.fauchois92
•
0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
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20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
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