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Popular Question to
Anand Rao
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Fizzah
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Ben_Ensembl
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Comment: Quality control of Chip-seq data (NRF and PCB)
by
Darked89
4.2k
If you remove the duplicates then the non-redundant/non-duplicated fraction will be 1.0. But if you save the log file during the de-duplic…
Comment: Update MitoZ 3.4 to 3.5
by
Darked89
4.2k
Well, the author asked for "update without uninstall", so I assumed he/she wants to keep the 3.4 version for the time being.
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
ATpoint
70k
"performed on Seurat" is like saying that the repair was done with a hammer and skrewdriver. Seurat has plenty of functions, you need to be…
Comment: Update MitoZ 3.4 to 3.5
by
Ram
38k
While this installs a conda environment with mitoz 3.5, it does not technically update the existing installation. Please note that this (i.…
Answer: Update MitoZ 3.4 to 3.5
by
Darked89
4.2k
conda create -n mitoz_35
conda activate mitoz_35
conda install -c bioconda mitoz
**EDIT**
you can also use Singularity conta…
Comment: What is the NCBI's definition of an "atypical genome"?
by
GenoMax
127k
You probably need to ask NCBI Help desk for an authoritative answer. Post their response when you get one here.
Comment: How to limit the use of RAM for clustalo?
by
animeshizik
•
0
Hello, thank you for responding to the problem!
My work computer has 32GB of RAM. I was running an alignment for a 5000 genome monkey pox…
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
Eisuan
▴
20
Hi! Two biological replicates. The previous analysis has been performed on Seurat.
Comment: genome annotation [sstart] [send] - how to get protein sequence from gene
by
danfarkas
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0
Hi shenwei356,
Thanks for the clarification. That makes sense.
I also realised that the reason I was confused, is because I need to also …
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
rpolicastro
11k
Do you have 2 biological or technical replicates for each condition? Also, you mentioned you didn't find dramatic changes with your analysi…
Comment: GO enrichment analysis
by
Antonio R. Franco
★
5.0k
I had the same situation that I solved using the R package TopGO.
You have already the list of GO terms. Need to follow the instructions i…
Comment: demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_stran
by
andres.firrincieli
3.1k
Hi @6f8262bb
I still have no idea what could be the cause but switching to guppy v6.2 solved this problem
Answer: Dealing with very large gene-lists in GSEA
by
Trivas
▴
720
IMO, in those cases you could look at ES instead of NES. Regardless, within the function `fgsea`, you can set the parameters `minSize` and …
Comment: merge vcf.gz file
by
Mali
•
0
file1 = '/sci/labs/orzuk/orzuk/projects/Skin/data/Ichilov/vcfFiles/vcfFiles/eb3_1001_748-gatk-haplotype.final.vcf.gz'
file2 = '/sci/labs/or…
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