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Answer: I don't want to believe the Interproscan DB estimated download time.

Answer: WGCNA: many over and under-expressed features in modules of a signed network

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Popular Question to modarzi ▴ 160

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Comment: I don't want to believe the Interproscan DB estimated download time. by gh • 0

Thank you!

Comment: What Are The Most Common Stupid Mistakes In Bioinformatics? by Raony Guimarães ★ 1.2k

You should also have told the correct command: grep '>' some.fasta And yes, of course, I did this before as well :D

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli 3.3k

> Ah, I just realized that I set the TOMType to signed. Is that > something different than the network type? It is a setting used for the …

Comment: Docker Error while running nf-core/rnaseq pipeline by eesha28112001 • 0

Okay, will do this! Using a Ubuntu subsystem on Windows so maybe it had something to do with that :(

Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote by Raony Guimarães ★ 1.2k

I don't know one specifically for biology but I would suggest [Miro][1] as a general-purpose mind mapping tool. [1]: https://miro.co…

Comment: mitochondrial genome, SRA PacBio sequencing. by GenoMax 129k

It does look like there are no PacBio datasets for insect mitogenomes. Not surprising since PacBio is more expensive compared to other sequ…

Comment: gatk Hardfilter Error by GenoMax 129k

I guess you changed the command in the original post since? I moved @Michael's comment to an answer. You can accept it (green check mark)…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by Sebastian Hesse ▴ 320

Sorry, I forgot to add that code. I used the code below: bwnet_mrn <- blockwiseModules(exp_4wgcna_mrn, …

Comment: Alignment of case vs. control from different origin by i.sudbery 17k

If you are interested in network buiding, then case vs case is definately the way to go. In general, network building is an alternative to …

Comment: Docker Error while running nf-core/rnaseq pipeline by barslmn ★ 1.5k

You got some docker troubleshooting to do. Try reinstalling according to official documentation: https://docs.docker.com/engine/install/ Af…

Comment: Alignment of case vs. control from different origin by sativus • 0

Thank you for the extensive answer, i highly appreciate it! I understood the basics regarding the limitations of batch-effect errors from p…

Comment: gatk Hardfilter Error by bestone ▴ 10

The example given in the documentation is wrong, the parameters are --filter-expression and --filter-name as listed below, not --filterExpr…

Comment: gatk Hardfilter Error by GenoMax 129k

That goes to show that there is something incorrect about the option in your command line. You will need to fix that.

Comment: gatk Hardfilter Error by bestone ▴ 10

Thank you so much it worked:)

Answer: gatk Hardfilter Error by Michael 52k

The example given in the [documentation][1] is wrong, the parameters are `--filter-expression` and `--filter-name` as listed below, not --f…

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