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11
votes
0
answers
1.9k
views
0
answers
News: GATB will provide developer support via Biostar
news gatb minia dsk written 3.2 years ago by Rayan Chikhi • 1.2k • updated 2.5 years ago by lh3 ♦ 30k
11
votes
4
answers
2.3k
views
4
answers
Tool: Mapsembler2 targeted micro assembly and visualization of the local assembly graph
assembly next-gen tool minia mapsembler written 2.9 years ago by pierre.peterlongo • 600 • updated 2.5 years ago by shelkmike • 20
8
votes
0
answers
1.8k
views
0
answers
News: New versions of Minia and DSK (2.0.x)
assembly news minia gatb dsk written 2.5 years ago by Rayan Chikhi • 1.2k
5
votes
1
answer
778
views
1
answer
News: New version of the GATB library
news next-gen gatb minia dsk written 2.5 years ago by edrezen • 680 • updated 2.5 years ago by Rayan Chikhi • 1.2k
3
votes
1
answer
1.0k
views
1
answer
Forum: Behavior of short read assemblers regarding filtering out short contigs
assembly forum spades velvet minia written 2.2 years ago by Rayan Chikhi • 1.2k • updated 2.2 years ago by Damian Kao ♦ 14k
2
votes
1
answer
600
views
1
answer
Adding read information to dBG nodes
gatb minia written 2.2 years ago by R.Fuentes • 10
2
votes
0
answers
1.2k
views
0
answers
Input File Formats in Haploview
assembly minia written 2.1 years ago by jgocejo • 10
1
vote
1
answer
185
views
1
answer
minia seg fault (core dump) after inability to unlink mphf temp files?
assembly minia written 3 months ago by mmelendrez • 10 • updated 3 days ago by malaya77 • 0
0
votes
1
answer
1.1k
views
1
answer
minia compile error in Max OS X v.10.7.5
compile minia written 3.1 years ago by gahunboo • 0 • updated 3.1 years ago by Michael Dondrup ♦ 42k
3
votes
3
answers
1.2k
views
3
answers
Problem with minia and bad_alloc, low memory limits?
memory minia bad_alloc written 3.0 years ago by jorgegiacomelli • 10
3
votes
1
answer
919
views
1
answer
How to determine appropriate value for abundance parameter?
minia written 3.0 years ago by amarin.cogburn • 0 • updated 3.0 years ago by Rayan Chikhi • 1.2k
2
votes
1
answer
1.2k
views
1
answer
minia assembler - counting kmers 'gatb::core::system::Exception'
minia written 2.6 years ago by thackl • 2.3k
3
votes
1
answer
1.0k
views
1
answer
Problem to compile the Software Minia
assembly next-gen compile minia written 2.4 years ago by alecloic • 30 • updated 2.4 years ago by Rayan Chikhi • 1.2k
4
votes
1
answer
796
views
1
answer
Forum: possible bug: can make minia run forever with a bogus FASTA
forum minia written 2.3 years ago by adam.ewing • 0 • updated 2.3 years ago by Rayan Chikhi • 1.2k
0
votes
0
answers
754
views
0
answers
Minia exits with error in "Debloom: cascading" stage
minia error written 2.3 years ago by Shellfishgene • 30
2
votes
1
answer
626
views
1
answer
DSK ignores abundance-max
minia dsk written 2.2 years ago by oiz67311 • 0 • updated 2.2 years ago by edrezen • 680
6
votes
1
answer
816
views
1
answer
Minia bug: max rehashes reached: 65536000 (notify a developer)
assembly minia bug written 2.1 years ago by fungopoo • 10
0
votes
1
answer
580
views
1
answer
Problems trying to run simple_test in linux binary distribution
minia dsk written 23 months ago by rsharris • 20 • updated 23 months ago by Rayan Chikhi • 1.2k
1
vote
1
answer
1.2k
views
1
answer
Scaffolding with SSPACE returned scaffold the same as initial contigs set
sspace minia written 22 months ago by pbigbig • 170 • updated 22 months ago by Damian Kao ♦ 14k
0
votes
0
answers
492
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 21 months ago by pbigbig • 170
2
votes
1
answer
645
views
1
answer
minia kmer limit
assembly minia written 21 months ago by orange • 30 • updated 21 months ago by edrezen • 680
0
votes
0
answers
830
views
0
answers
Minia was killed when counting kmer and abundance-min choice
minia written 21 months ago by caizexi123 • 40
0
votes
1
answer
578
views
1
answer
minia 2.0.3 problem building from source - hdf5/hdf5.h missing?
minia written 19 months ago by Torst • 850 • updated 19 months ago by Rayan Chikhi • 1.2k
1
vote
0
answers
522
views
0
answers
Internal memory allocator is full!
software error assembly next-gen minia written 17 months ago by cmckay • 0 • updated 17 months ago by Dan D ♦ 6.0k
0
votes
0
answers
688
views
0
answers
Minia crashes during kmer counting
minia written 15 months ago by shammond • 0
1
vote
1
answer
380
views
1
answer
Minia bug with "--debloom original"
minia written 13 months ago by shammond • 0 • updated 12 months ago by Rayan Chikhi • 1.2k
0
votes
0
answers
292
views
0
answers
Mina recompile for larger kmer error
recompile kmer minia written 11 months ago by JackyBurton • 0
1
vote
1
answer
330
views
1
answer
Minia estimated genome size
genome assembly minia written 7 months ago by stacy734 • 20 • updated 7 months ago by Rayan Chikhi • 1.2k
0
votes
0
answers
145
views
0
answers
Does Minia discard singletons?
minia written 5 months ago by stacy734 • 20
0
votes
0
answers
140
views
0
answers
Error: MPHF is not injective in Minia
genome assembly mphf minia error written 28 days ago by k.e.cadorna • 0
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