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11
votes
0
answers
2.9k
views
0
answers
News: GATB will provide developer support via Biostar
news gatb minia dsk written 5.1 years ago by Rayan Chikhi • 1.4k • updated 4.4 years ago by lh3 ♦ 31k
11
votes
4
answers
3.1k
views
4
answers
Tool: Mapsembler2 targeted micro assembly and visualization of the local assembly graph
assembly next-gen tool minia mapsembler written 4.9 years ago by pierre.peterlongo • 840 • updated 4.4 years ago by shelkmike • 130
8
votes
0
answers
2.5k
views
0
answers
News: New versions of Minia and DSK (2.0.x)
assembly news minia gatb dsk written 4.4 years ago by Rayan Chikhi • 1.4k
5
votes
1
answer
1.3k
views
1
answer
News: New version of the GATB library
news next-gen gatb minia dsk written 4.4 years ago by edrezen • 720 • updated 4.4 years ago by Rayan Chikhi • 1.4k
5
votes
1
answer
1.6k
views
1
answer
Forum: Behavior of short read assemblers regarding filtering out short contigs
assembly forum spades velvet minia written 4.1 years ago by Rayan Chikhi • 1.4k • updated 4.1 years ago by Damian Kao ♦ 15k
5
votes
1
answer
1.4k
views
1
answer
How to determine appropriate value for abundance parameter?
minia written 4.9 years ago by amarin.cogburn • 10 • updated 4.9 years ago by Rayan Chikhi • 1.4k
2
votes
1
answer
1.1k
views
1
answer
Adding read information to dBG nodes
gatb minia written 4.1 years ago by R.Fuentes • 10
2
votes
0
answers
2.4k
views
0
answers
Input File Formats in Haploview
assembly minia written 4.0 years ago by jgocejo • 10
1
vote
1
answer
755
views
1
answer
minia seg fault (core dump) after inability to unlink mphf temp files?
assembly minia written 2.2 years ago by mmelendrez • 10 • updated 23 months ago by malaya77 • 0
5
votes
2
answers
382
views
2
answers
Scaffolding contigs generated by minia
genome assembly denovo_assembly minia scaffolding written 9 months ago by Mostafa • 10 • updated 9 months ago by RamRS ♦ 22k
0
votes
1
answer
1.6k
views
1
answer
minia compile error in Max OS X v.10.7.5
compile minia written 5.0 years ago by gahunboo • 0 • updated 5.0 years ago by Michael Dondrup ♦ 46k
3
votes
3
answers
1.9k
views
3
answers
Problem with minia and bad_alloc, low memory limits?
memory minia bad_alloc written 5.0 years ago by jorgegiacomelli • 10
2
votes
1
answer
1.8k
views
1
answer
minia assembler - counting kmers 'gatb::core::system::Exception'
minia written 4.5 years ago by thackl • 2.6k
3
votes
1
answer
1.7k
views
1
answer
Problem to compile the Software Minia
assembly next-gen compile minia written 4.3 years ago by alecloic • 40 • updated 4.3 years ago by Rayan Chikhi • 1.4k
4
votes
1
answer
1.2k
views
1
answer
Forum: possible bug: can make minia run forever with a bogus FASTA
forum minia written 4.2 years ago by adam.ewing • 0 • updated 4.2 years ago by Rayan Chikhi • 1.4k
0
votes
0
answers
1.4k
views
0
answers
Minia exits with error in "Debloom: cascading" stage
minia error written 4.2 years ago by Shellfishgene • 40
2
votes
1
answer
1.1k
views
1
answer
DSK ignores abundance-max
minia dsk written 4.2 years ago by oiz67311 • 0 • updated 4.2 years ago by edrezen • 720
6
votes
1
answer
1.6k
views
1
answer
Minia bug: max rehashes reached: 65536000 (notify a developer)
assembly minia bug written 4.1 years ago by fungopoo • 10 • updated 21 months ago by Biostar ♦♦ 20
0
votes
1
answer
1.0k
views
1
answer
Problems trying to run simple_test in linux binary distribution
minia dsk written 3.8 years ago by rsharris • 30 • updated 3.8 years ago by Rayan Chikhi • 1.4k
1
vote
1
answer
2.2k
views
1
answer
Scaffolding with SSPACE returned scaffold the same as initial contigs set
sspace minia written 3.8 years ago by pbigbig • 190 • updated 3.8 years ago by Damian Kao ♦ 15k
0
votes
0
answers
885
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 3.7 years ago by pbigbig • 190
2
votes
1
answer
1.2k
views
1
answer
minia kmer limit
assembly minia written 3.7 years ago by orange • 30 • updated 3.7 years ago by edrezen • 720
0
votes
0
answers
1.4k
views
0
answers
Minia was killed when counting kmer and abundance-min choice
minia written 3.7 years ago by caizexi123 • 50
0
votes
1
answer
1.1k
views
1
answer
minia 2.0.3 problem building from source - hdf5/hdf5.h missing?
minia written 3.5 years ago by Torst • 900 • updated 3.5 years ago by Rayan Chikhi • 1.4k
1
vote
0
answers
1.2k
views
0
answers
Internal memory allocator is full!
software error assembly next-gen minia written 3.3 years ago by cmckay • 0 • updated 9 months ago by RamRS ♦ 22k
0
votes
0
answers
1.5k
views
0
answers
Minia crashes during kmer counting
minia written 3.2 years ago by shammond • 0
1
vote
1
answer
808
views
1
answer
Minia bug with "--debloom original"
minia written 3.0 years ago by shammond • 0 • updated 3.0 years ago by Rayan Chikhi • 1.4k
0
votes
0
answers
692
views
0
answers
Mina recompile for larger kmer error
recompile kmer minia written 2.9 years ago by JackyBurton • 0
1
vote
1
answer
732
views
1
answer
Minia estimated genome size
genome assembly minia written 2.5 years ago by stacy734 • 40 • updated 2.5 years ago by Rayan Chikhi • 1.4k
0
votes
1
answer
596
views
1
answer
Does Minia discard singletons?
minia written 2.4 years ago by stacy734 • 40 • updated 22 months ago by Rayan Chikhi • 1.4k
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