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While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match reads?
rnaseq mirdeep2 mirna written 8 weeks ago by bioinforesearchquestions • 140
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209
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Need help in selecting the correct output file from miRDeep2?
mirbase mirdeep2 rna-seq mirna written 3 months ago by bioinforesearchquestions • 140
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miRDeep2: creating Rfam index not possible therefore no Rfam analysis
mirna annotation rfam mirdeep2 written 3 months ago by eva-valerie • 0
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Which read counts file from miRDeep2 should be considered for differential expression analysis?
mirbase mirdeep2 rna-seq mirna written 7 months ago by bioinforesearchquestions • 140 • updated 5 months ago by h.mon ♦ 15k
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Mapping statistics error from mirdeep2
mirdeep2 rna-seq mapper.pl written 4.1 years ago by Jordan • 1.0k • updated 6 months ago by zunpengliu • 0
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What to use as Close-species for miRDeep2
close species related species mirdeep2 mirna written 7 months ago by Coppini • 0
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Read Counts from miRDeep2 for posterior DE analysis
mirdeep2 read counts de rna-seq mirnas written 21 months ago by v82masae • 60 • updated 7 months ago by bioinforesearchquestions • 140
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514
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miRNA analysis by miRDeep2
mirdeep2 mirna written 10 months ago by Xin • 60
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miRDeep2 output scores
ngs de mirdeep2 rna-seq mirnas written 20 months ago by v82masae • 60 • updated 12 months ago by evelinetavares • 0
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517
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miRDeep2, error with quantifier.pl
quantifier.pl mirdeep2 smallrna-seq mirna written 14 months ago by Chynoki • 0
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1
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419
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1
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mirdeep2 installation saying bowtie not found
mirdeep2 written 15 months ago by nathanielsaxe • 10 • updated 14 months ago by Biostar ♦♦ 20
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2
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644
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miRDeep2.pl error when reads.fa input file contains info for more than one sample
software error next-gen mirna-seq mirdeep2 mirdeep written 14 months ago by fana • 0 • updated 14 months ago by Chris Fields • 1.9k
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463
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miRDeep2 whitespaces error
next-gen mirdeep2 written 15 months ago by alysonashe • 0 • updated 15 months ago by Ram ♦ 15k
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randfold-2.0.1 installation problem
microrna mirdeep2 written 2.1 years ago by chipseq33 • 10 • updated 16 months ago by msolanodelacruz • 0
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423
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discrepancy in two known miRNA results in miRDeep2
rna-seq mirdeep2 mirna written 16 months ago by sjbasu • 30
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437
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mirdeeps number of replicates
mirna-seq mirdeep2 mirna written 17 months ago by kylvalda • 0 • updated 17 months ago by genomax ♦ 49k
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596
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miRDeep2: mapping produced bowtie.log and mapper.log - which one to trust?
small rna-seq mirna-seq mirdeep2 rna-seq written 17 months ago by CandiceChuDVM • 1.7k
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zero read_count output from mirDeep2 quantification procedure. How to trouble shoot?
software error rna-seq mirdeep2 written 19 months ago by zhenyisong • 120
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2
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miRDeep2.0.0.8 install error occured
mapper mirdeep2 written 2.1 years ago by Yamiru • 20 • updated 19 months ago by aj03 • 0
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Misleading mirDeep2 output? recall not tallying
rna-seq mirdeep2 mirna written 19 months ago by Michael Dondrup ♦ 44k
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mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
mirdeep2 written 20 months ago by Michael Dondrup ♦ 44k
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please someone help me with running mirdeep2
software error perl mirdeep2 written 21 months ago by F • 3.0k
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1
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927
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1
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Duplicate miRNAs with different read counts in miRDeep2
read counts mirna mirdeep mirdeep2 mirnas written 21 months ago by PAn • 20 • updated 21 months ago by benformatics • 160
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619
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please help with quantifier.pl error
mirdeep2 rna-seq mirnas written 21 months ago by F • 3.0k
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1
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662
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1
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miRNA DE analysis with mirdeep2
quantifier.pl de analysis mirdeep2 rna-seq mirnas written 21 months ago by F • 3.0k • updated 21 months ago by harold.smith.tarheel • 4.1k
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711
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error in mirdeep2 mapper
perl mirdeep2 rna-seq mirnas written 21 months ago by F • 3.0k
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1
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694
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1
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creating a miRNA gtf by mirdeep2
gtf mirdeep2 rna-seq mirna written 21 months ago by F • 3.0k • updated 21 months ago by John ♦ 12k
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950
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mirdeep2 error in sequence file
ngs next-gen mirdeep2 written 24 months ago by kamyasingh2490 • 0 • updated 22 months ago by gzl • 20
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Can ncRNAs be found from all RNA-seq data?
deepbase rna-seq mirdeep2 ncrna written 2.2 years ago by fernardo • 110 • updated 22 months ago by Edalat • 30
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Error Runnin miRDeep2
mirdeep2 microrna sequencing written 3.0 years ago by pm2012 • 80 • updated 2.0 years ago by jon.brate • 150
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