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How do I know if the miRDeep2 predicted miRNAs are conserved or novel?
srna-seq rna-seq mirdeep2 mirna written 1 day ago by 2822462298 • 10
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Possible reasons mapping percentage abysmally low for miRNA reads?
mirdeep2 mirna written 1 day ago by Cookie-san • 40
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674
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What to use as Close-species for miRDeep2
close species related species mirdeep2 mirna written 2.2 years ago by Coppini • 0 • updated 8 days ago by 2822462298 • 10
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Could not locate bowtie index (miRDeep2 analysis)
mirna mirdeep2 bowtie index rna-seq written 5 weeks ago by misslaurenheadley • 10
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How to quantify novel microRNA read counts for each sample from miRDeep2
readcounts novel mirdeep2 microrna rna-seq written 3 months ago by sri.dewi • 0 • updated 6 weeks ago by zarskili • 20
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6 follow
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The Result Of The Mirdeep2
mirdeep2 mirna written 6.0 years ago by hua.peng1314 • 100 • updated 9 weeks ago by zx8754 ♦ 8.8k
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coordinates mature microRNAs from precursors
micrornas mirdeep2 written 9 weeks ago by Amaranta_Remedios • 0 • updated 9 weeks ago by h.mon ♦ 29k
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randfold-2.0.1 installation problem
microrna mirdeep2 written 3.6 years ago by chipseq33 • 10 • updated 3 months ago by h.mon ♦ 29k
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998
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small RNA time course pathogen host methodology query
rna-seq mirdeep2 written 4.8 years ago by rob234king • 580 • updated 3 months ago by Biostar ♦♦ 20
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miRDeep2 "no file 'precursors.fa_stack' found" error.
rna-seq mirdeep2 mirna written 4 months ago by YJ • 0 • updated 4 months ago by kennyluo4 • 0
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169
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How to integrate mirdeep2 result from different samples
mirdeep2 rna-seq mirna written 4 months ago by kennyluo4 • 0
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339
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Mirdeep2 novel miRNA mature coordinates differing
novelgenes novelmirna rna-seq mirdeep2 mirna written 9 months ago by gulamaltab • 0
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miRDeep2 installation 'make_html.pl'
perl pdf::api2 mirdeep2 written 9 months ago by Barry Digby • 240 • updated 9 months ago by RamRS ♦ 25k
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Running mirdeep2 mapper.pl problems
mirdeep2 rna-seq microrna written 9 months ago by lachlan.gray95 • 0 • updated 9 months ago by h.mon ♦ 29k
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MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 10 months ago by gulamaltab • 0
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miRDeep2 - same micro seq but different coordinates
microrna mirdeep2 mirna written 10 months ago by klimek.magda • 0 • updated 10 months ago by h.mon ♦ 29k
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mirdeep2: UMI information lost when reads are collapsed
umi mirdeep2 mirna written 12 months ago by Rituriya • 30
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miRdeep2 mapper error
mirdeep2 mapper.pl written 15 months ago by nivya.james2016 • 0 • updated 13 months ago by Biostar ♦♦ 20
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448
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mirDeep2 mapping error
mirdeep2 mapper.pl written 13 months ago by nivya.james2016 • 0 • updated 13 months ago by Biostar ♦♦ 20
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miRDeep2.pl error when reads.fa input file contains info for more than one sample
next-gen mirna-seq mirdeep2 written 2.8 years ago by fana • 30 • updated 13 months ago by h.mon ♦ 29k
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Problem with miRDeep2.pl
next-gen mirdeep2 mirna written 13 months ago by JulianC • 10
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How to uninstall mirdeep2 tool?
mirdeep2 written 14 months ago by nivya.james2016 • 0
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483
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error in mapper script in miRDeep2
mapper module mirdeep2 written 15 months ago by nivya.james2016 • 0 • updated 15 months ago by finswimmer ♦ 13k
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What is the purpose of having reference genome of other species during miRDeep2?
mirnaseq mirdeep2 written 16 months ago by nivya.james2016 • 0
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While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match reads?
rnaseq mirdeep2 mirna written 21 months ago by bioinforesearchquestions • 270
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Need help in selecting the correct output file from miRDeep2?
mirbase mirdeep2 rna-seq mirna written 22 months ago by bioinforesearchquestions • 270
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miRDeep2: creating Rfam index not possible therefore no Rfam analysis
mirna annotation rfam mirdeep2 written 23 months ago by E • 0
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Which read counts file from miRDeep2 should be considered for differential expression analysis?
mirbase mirdeep2 rna-seq mirna written 2.2 years ago by bioinforesearchquestions • 270 • updated 2.1 years ago by h.mon ♦ 29k
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6 follow
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Mapping statistics error from mirdeep2
mirdeep2 rna-seq mapper.pl written 5.7 years ago by Jordan • 1.1k • updated 2.1 years ago by zunpengliu • 0
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Read Counts from miRDeep2 for posterior DE analysis
mirdeep2 read counts de rna-seq mirnas written 3.3 years ago by v82masae • 140 • updated 2.2 years ago by bioinforesearchquestions • 270
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