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miRdeep2 mapper error
mirdeep2 mapper.pl written 8 weeks ago by nivya.james2016 • 0 • updated 1 day ago by Biostar ♦♦ 20
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1
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111
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1
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mirDeep2 mapping error
mirdeep2 mapper.pl written 13 days ago by nivya.james2016 • 0 • updated 2 days ago by Biostar ♦♦ 20
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3
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915
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3
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miRDeep2.pl error when reads.fa input file contains info for more than one sample
next-gen mirna-seq mirdeep2 written 20 months ago by fana • 0 • updated 8 days ago by h.mon ♦ 21k
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75
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Problem with miRDeep2.pl
next-gen mirdeep2 mirna written 12 days ago by JulianC • 10
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106
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How to uninstall mirdeep2 tool?
mirdeep2 written 23 days ago by nivya.james2016 • 0
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127
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error in mapper script in miRDeep2
mapper module mirdeep2 written 7 weeks ago by nivya.james2016 • 0 • updated 7 weeks ago by finswimmer ♦ 7.9k
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115
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What is the purpose of having reference genome of other species during miRDeep2?
mirnaseq mirdeep2 written 12 weeks ago by nivya.james2016 • 0
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2
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2
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randfold-2.0.1 installation problem
microrna mirdeep2 written 2.5 years ago by chipseq33 • 10 • updated 5 months ago by robertmukiibi2012 • 0
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265
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While generating the % of mapped reads to all miRNAs, do I need to consider unique or multi-match reads?
rnaseq mirdeep2 mirna written 7 months ago by bioinforesearchquestions • 190
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369
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Need help in selecting the correct output file from miRDeep2?
mirbase mirdeep2 rna-seq mirna written 9 months ago by bioinforesearchquestions • 190
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336
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miRDeep2: creating Rfam index not possible therefore no Rfam analysis
mirna annotation rfam mirdeep2 written 9 months ago by eva-valerie • 0
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1
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824
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1
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Which read counts file from miRDeep2 should be considered for differential expression analysis?
mirbase mirdeep2 rna-seq mirna written 13 months ago by bioinforesearchquestions • 190 • updated 11 months ago by h.mon ♦ 21k
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6 follow
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Mapping statistics error from mirdeep2
mirdeep2 rna-seq mapper.pl written 4.6 years ago by Jordan • 1.1k • updated 12 months ago by zunpengliu • 0
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384
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What to use as Close-species for miRDeep2
close species related species mirdeep2 mirna written 13 months ago by Coppini • 0
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Read Counts from miRDeep2 for posterior DE analysis
mirdeep2 read counts de rna-seq mirnas written 2.2 years ago by v82masae • 60 • updated 13 months ago by bioinforesearchquestions • 190
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812
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miRNA analysis by miRDeep2
mirdeep2 mirna written 16 months ago by Xin • 60
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1.6k
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miRDeep2 output scores
ngs de mirdeep2 rna-seq mirnas written 2.2 years ago by v82masae • 60 • updated 18 months ago by evelinetavares • 0
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703
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miRDeep2, error with quantifier.pl
quantifier.pl mirdeep2 smallrna-seq mirna written 19 months ago by Chynoki • 0
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1
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535
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1
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mirdeep2 installation saying bowtie not found
mirdeep2 written 21 months ago by nathanielsaxe • 10 • updated 20 months ago by Biostar ♦♦ 20
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689
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miRDeep2 whitespaces error
next-gen mirdeep2 written 21 months ago by alysonashe • 0 • updated 21 months ago by RamRS ♦ 19k
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524
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discrepancy in two known miRNA results in miRDeep2
rna-seq mirdeep2 mirna written 22 months ago by sjbasu • 30
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mirdeeps number of replicates
mirna-seq mirdeep2 mirna written 23 months ago by kylvalda • 0 • updated 23 months ago by genomax ♦ 59k
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793
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miRDeep2: mapping produced bowtie.log and mapper.log - which one to trust?
small rna-seq mirna-seq mirdeep2 rna-seq written 23 months ago by CandiceChuDVM • 1.8k
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733
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zero read_count output from mirDeep2 quantification procedure. How to trouble shoot?
software error rna-seq mirdeep2 written 2.1 years ago by zhenyisong • 130
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miRDeep2.0.0.8 install error occured
mapper mirdeep2 written 2.6 years ago by Yamiru • 20 • updated 2.1 years ago by aj03 • 0
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Misleading mirDeep2 output? recall not tallying
rna-seq mirdeep2 mirna written 2.1 years ago by Michael Dondrup ♦ 45k
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1.5k
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1
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mirDeep2 using bowtie vs. bwa - why do more aligned reads yield less miRNA
mirdeep2 written 2.2 years ago by Michael Dondrup ♦ 45k
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please someone help me with running mirdeep2
software error perl mirdeep2 written 2.2 years ago by F • 3.1k
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1.2k
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1
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Duplicate miRNAs with different read counts in miRDeep2
read counts mirna mirdeep mirdeep2 mirnas written 2.2 years ago by PAn • 20 • updated 2.2 years ago by benformatics • 350
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748
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please help with quantifier.pl error
mirdeep2 rna-seq mirnas written 2.2 years ago by F • 3.1k
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