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How to acquire the mature miRNA data from TCGA
tcga rna-seq mirna written 2 days ago by lykosherdshep • 10
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miRNA quantification on custom database
rna-seq mirna written 6 days ago by pbigbig • 200
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error in deseq2
deseq2 mirna written 18 days ago by anjuraas • 10
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Tool: Transcription Factor Binding Sites, Motifs and Expression Profiles from ~10200 ChIP-seq and ~20000 RNA-seq samples
transcription factor lncrna chip-seq tool mirna written 2.9 years ago by lsp03yjh • 750 • updated 22 days ago by angajalaanusha • 0
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small rna length distribution
mirna written 7 weeks ago by bioinfo_ga • 20 • updated 28 days ago by benformatics • 1.1k
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mirDeep-P file needed for plant miRNA prediction
mirdeep-p mirna written 4 weeks ago by polag01 • 10 • updated 4 weeks ago by h.mon ♦ 26k
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lncRNA,miRNA, gene interaction information in Rat
rat intraction lncrna mirna written 7 weeks ago by seta • 1.2k
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5 follow
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miRNAs detected in bulk mRNA-Seq data - how to annotate?
R rna-seq mirna written 7 weeks ago by Kristin Muench • 450
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Pipeline validating in miRNA studies
prediction rna-seq mirna written 8 weeks ago by yoosefyud • 20 • updated 8 weeks ago by Buffo • 1.6k
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is there an function to summarize miRNA array probes but do nothing else?
summarise probes affy mirna written 8 weeks ago by RNAseqer • 110
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edgeR FDR always 1
fdr differentialexpression edger mirna written 9 weeks ago by AngAdd • 0 • updated 9 weeks ago by swbarnes2 ♦ 6.1k
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162
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Error "Bioconductor - mirna40cdf not available"
affy mirna40cdf mirna written 9 weeks ago by RNAseqer • 110
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214
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miRna-Seq, featureCounts problem
mirbase featurecounts mirna written 9 weeks ago by AngAdd • 0 • updated 9 weeks ago by Buffo • 1.6k
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whats is the best normalization technique for miRNA microarray data?
normalization microarray mirna written 11 weeks ago by RNAseqer • 110
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What type of GTF file should I use for miRNAseq analysis?
rna-seq edger mirna written 12 weeks ago by silas008 • 100
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CCLE miRNA expression data
ccle nanostring mirna written 3 months ago by baris.blknt • 0
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123
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Identify and separate Micronas from my raw data.
rna-seq microrna mirna written 3 months ago by sabaghianamir70 • 0
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152
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Finding a biomarker from DE genes
mirna biomarker differential expression rna-seq written 3 months ago by Rituriya • 20 • updated 3 months ago by Buffo • 1.6k
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Methods of looking at miRNA target enrichment in lists of genes
gene R rna-seq mirna written 3 months ago by james.os • 0 • updated 3 months ago by i.sudbery ♦ 5.1k
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Perform correlation analysis between miRNA and mRNA expression data with different transformation values for the same samples
tcga correlation analysis rna-seq mirna written 4 months ago by svlachavas • 570
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Correlating miRNA count from DeSEQ2 with Transcript FPKM from cuffdiff
cuffdiif normalization deseq2 transcript mirna written 4 months ago by arisarkar88 • 0 • updated 4 months ago by Kevin Blighe ♦ 46k
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bowtie (1) 0% alignment on paired-end RNAseq data
alignment bowtie rna-seq mirna written 4 months ago by gulamaltab • 0 • updated 4 months ago by ATpoint ♦ 21k
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mireap procedure short tutorial
mireap mirna written 2.9 years ago by F • 3.4k • updated 4 months ago by b.d237 • 140
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Is it possible to do differential analyis on mirdeep2 outcome?
differential analysis mirdeep rna-seq mirna written 4 months ago by gulamaltab • 0
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Mirdeep2 novel miRNA mature coordinates differing
novelgenes novelmirna rna-seq mirdeep2 mirna written 4 months ago by gulamaltab • 0
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Tool: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Interactions from RNA Interactome Sequencing Data
lncrna mirna rna interactome tool interactome written 8 months ago by lsp03yjh • 750
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Affymetrix miRNA 4.0 Normalization
microarray mirna written 4 months ago by gracie • 10
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340
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Oligo: GeneChip miRNA 4.0 analysis only returns control probes
R oligo mirna written 5 months ago by Keiron O'Shea • 10 • updated 4 months ago by iraia.munoa • 70
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MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 5 months ago by gulamaltab • 0
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Are there good reference for miRNA microRNA pathway analysis in R following edgeR run?
pathway analysis microrna mirna written 17 months ago by Björn • 40 • updated 5 months ago by brianj.park • 0
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