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How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 3 days ago by anshulmbi • 0 • updated 2 days ago by Russ • 40
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miRNA corresponds to multiple ensembl gene IDs
mirbase ensembl mirna written 2 days ago by alcs417 • 20 • updated 2 days ago by Emily_Ensembl ♦ 13k
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pathway analysis tools
ipa mirna written 3 days ago by gracie • 0 • updated 3 days ago by Denise - Open Targets • 4.0k
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miRNA family consevation plot
tool mirna written 4 days ago by nirvana • 0
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Tumor Purity and miRNA / small RNA pipeline
tumor purity piple rna-seq mirna written 9 days ago by Chris_AI • 20 • updated 8 days ago by igor • 4.5k
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At which position, should I expect a peak for miRNA sequenced FASTQ reads?
smallrna fastq rna-seq mirna written 10 days ago by bioinforesearchquestions • 90
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What is the acceptable percentage of reads with adapters sequenced in miRNA sequencing?
adapters reads smallrna rna-seq mirna written 11 days ago by bioinforesearchquestions • 90
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Affymetrix miRNA 4.0 Normalization and Analysis
R mirna limma microarray written 19 months ago by VHahaut • 940 • updated 11 days ago by Kevin Blighe • 1.2k
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Do I have to compared sequenced miRNA reads against bovine miRNA from miRBase mature.fa sequence or entire bovine genome?
small rna rna-seq mirna written 16 days ago by bioinforesearchquestions • 90
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Is there any recommended steps/pipeline for identifying differential miRNA expression profile?
small rna rna-seq mirna written 18 days ago by bioinforesearchquestions • 90
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Quantifying Proportion Of Transcription That Is Mirna Vs Mrna
mirna written 6.8 years ago by Paul • 720 • updated 24 days ago by Biostar ♦♦ 20
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Miranalyser For Mirna Prediction
prediction mirna written 5.2 years ago by vandanabioinfo23 • 0 • updated 24 days ago by singh.vijender • 0
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Novel miRNA taregt gene prediction tool?
webserver prediction tool mirna target written 14 months ago by bbmisraccb • 0 • updated 26 days ago by Biostar ♦♦ 20
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Database for RNA-Seq, ctDNA, miRNA-Seq
database mirna rna-seq repository written 29 days ago by eclark28 • 0
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Computing TPM from normalized read count from DESEQ
expression mirna deseq genomics rna-seq written 4 weeks ago by jack • 680 • updated 4 weeks ago by geek_y ♦ 8.0k
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Tool: Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA Pan-Cancer data
transcription factor lncrna chip-seq tool mirna written 11 months ago by lsp03yjh • 470
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miRNA analysis by miRDeep2
mirdeep2 mirna written 6 weeks ago by Xin • 60
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ggplot expression values as function of samples and classes
ggplot classes mirna expression written 6 weeks ago by debitboro • 70 • updated 6 weeks ago by Ido Tamir ♦ 4.7k
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miRNA identification from RNA seq data
sequencing next-gen rna-seq mirna written 7 weeks ago by shafnaasmy.v.s • 0 • updated 7 weeks ago by Buffo • 480
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MiRNA orthologues between human and chick
orthologues microrna mirna written 4 months ago by fana • 0 • updated 8 weeks ago by Biostar ♦♦ 20
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FASTQC Per base sequence quality fail after removal of adaptors
small rna seq srna adaptor mirna fastqc written 9 weeks ago by ALEX • 0
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RNAfold is OK but RNAduplex cannot be executed in miRdup process
mirdup mirna tool vienna tools written 18 months ago by beauchemin.david.3 • 0 • updated 10 weeks ago by mickael.leclercq • 30
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Finding common small RNAs between two FASTQ datasets.
fastq small rna common sequences rna-seq mirna written 10 weeks ago by bteefy8 • 0
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Exosomal miRNA vs cellular miRNA alignment rates
alignment mirna written 11 weeks ago by brent_wilson • 70
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how to classify miRNA sequence into difference families and name miRNAs
mirna nomenclature families seed region written 14 months ago by fanglujing • 10 • updated 11 weeks ago by Biostar ♦♦ 20
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Why does the DIANA/mirpath KEGG analysis give mouse pathways even although human is selected?
mirpath analysis kegg diana mirna written 11 weeks ago by Grunir112 • 10
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Tool: oncoNcRNA: Exploring the lncRNAs and miRNAs with Oncogenic Potentials from TCGA and CCLE cancer samples
tool cancer tcga ccle mirna lncrna written 7 months ago by lsp03yjh • 470
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Reads mapping to mir21a in mir-21 Knock-Out mice
htseq bowtie mirna written 3 months ago by gkuffel22 • 30
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Microrna Pipeline
mirna written 3.6 years ago by xiaojuhu13 • 140 • updated 3 months ago by k.kathirvel93 • 30
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Use blastn to predict miRNA
new mirna conserved mirna blastn mirna written 3 months ago by MeiNB • 10
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