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C: Flagstat vs stats Samtools by v.shapovalova1 • 0
Thank you for your explanation, seems that at last I understood. I have 2 mln entries /lines in t...
A: Flagstat vs stats Samtools by v.shapovalova1 • 0
Thank you for your explanation, seems that at last I understood. I have 2 mln entries /lines in t...
C: OUTRIDER for gene expression outliers (could not find function "OutriderDataSet" by kristoffer.vittingseerup • 2.9k
Did you get any warnings when loading the OUTRIDER library?
C: What is the need for signed or signed hybrid (as in WGCNA) co-expression network by andres.firrincieli • 320
The first disclaimer pose a 'biological' question. If you think is more informative keeping stron...
C: EMBOSS Primersearch qualifiers by davehor • 0
I have an sequence file containing several different assemblies, I would like to use primersearch...
C: How to remove stop codons from BUSCO identified orthologous genes? by lieven.sterck ♦ 6.4k
Can you elaborate why you want to do so? If the orthologous genes that are being picked up have ...
A: How to solve: fgsea returns empty dataframe by nattzy94 • 10
I realised that I am using examplePathways which doesn't cover all the genes. Solution was to dow...
C: Why genome reference (genome assembly) name is so annoying? by Pierre Lindenbaum ♦ 124k
please validate this answer using the green tick on the left.
A: Arabidopsis thaliana RNA-Seq analysis: Is 68% transcript annotation acceptable/e by lieven.sterck ♦ 6.4k
Yes, I would say that is according to expectations (70% "known" genes is about the point we are a...
C: What is the need for signed or signed hybrid (as in WGCNA) co-expression network by Arindam Ghosh • 200
Well, I have read the contents of this blog. As it explains or rather recommends signed network d...
C: Flagstat vs stats Samtools by Devon Ryan ♦ 93k
If you want the primary entries, then `-F 2304` is what you want. Remember that reads don't need ...
A: What is the need for signed or signed hybrid (as in WGCNA) co-expression network by andres.firrincieli • 320
Hi [Signed or unsigned which network type is preferable?][1] [Signed network from signed topolo...

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