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Recent Replies
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C: Bioinformatics: Converting EntrezGeneID to FASTA entry for BLAST alignment by
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There's [REntrez](https://cran.r-project.org/web/packages/rentrez/index.html) package that may do...
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Dear sam Sorry for the delayed response. Star is a splice aware aligner and is suitable for the ...
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Hi Kevin, thank you for your tutorial. I want to merge my own data with 1kg and plot PCA-bi plot,...
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library(rentrez) paper_ids <- entrez_search(db = "pubmed", "Nature[...
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jared.andrews07 ♦ 6.1k
You can access the annotation file directly through [GEO](https://www.ncbi.nlm.nih.gov/geo/query/...
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Hi, again, Actually, I have medusa-scaffold data, which contain 160 scaffolds and some NNN brid...
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geek_y ♦ 11k
For eQTL analysis, you can use any normalization method like TMM or log2(CPM) followed by quantil...
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C: PAM50 analysis from RNAseq data by
mmeghana • 0
Hey Kevin, Thank you for your response. Will go through the link.
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Sishuo Wang • 200
You might wish to have a look at [this tool][1]. See the end of the webpage for examples. [1]...
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C: Clustering of DAVID gene enrichment results from gene expression studies by
Kevin Blighe ♦ 61k
Hello Suren, the gene score is the negative log10 of the adjusted p-value for each gene, calculat...
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A: Clustering of DAVID gene enrichment results from gene expression studies by
Suren • 90
Hi Kevin, thanks for this great tutorial. However, can you please elaborate on how did you calcul...
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Ok, while I agree that you should probably use `bedtools intersect`, I am always happy to see tha...
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