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4
votes
1
answer
124
views
1
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Converting motif databases from meme suite to other formats
meme format motif written 15 days ago by nanoide • 30 • updated 14 days ago by Alex Reynolds ♦ 28k
3
votes
0
answers
159
views
0
answers
Weighted sequence logos and motifs
motif logo written 28 days ago by Sergio Martínez Cuesta • 60
0
votes
0
answers
66
views
0
answers
difference between expectation maximisation and hypergeometric distribution for motif finding
motif hypergeometric distribution em written 5 weeks ago by kdc15 • 30
0
votes
0
answers
90
views
0
answers
Reinfrorce motif search with knowledge of protein sequence / structure
motif protein written 7 weeks ago by massa.kassa.sc3na • 0 • updated 7 weeks ago by ATpoint ♦ 15k
0
votes
2
answers
205
views
2
answers
Convert Fasta format to MEME-motif format
meme-suite fimo format conversion motif fasta written 8 weeks ago by kashiff007 • 50
0
votes
0
answers
184
views
0
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Extract novel motifs from protein multiple sequence alignment
R alignment motif written 12 weeks ago by dim.thebiologist • 0
0
votes
0
answers
121
views
0
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significance evaluation of Motif identified by SeqLogo
alignment sequence motif written 4 months ago by weixiaokuan • 90
0
votes
1
answer
993
views
1
answer
Motif discovery using MEME
meme motif conserved domain written 2.3 years ago by #### • 190 • updated 4 months ago by Biostar ♦♦ 20
1
vote
0
answers
165
views
0
answers
Unusual results from meme-chip
meme-chip motif meme hocomoco cis-bp written 4 months ago by kdc15 • 30
10
votes
1
answer
295
views
6 follow
1
answer
scan DNA sequence for known motifs
sequence motif written 4 months ago by 2nelly • 130 • updated 4 months ago by Michael Dondrup ♦ 46k
0
votes
2
answers
1.6k
views
2
answers
Conserved Domain Batch Retrieval
domain plant protein motif written 5.1 years ago by bran10.sp • 0 • updated 5 months ago by Minstein • 70
9
votes
1
answer
1.4k
views
6 follow
1
answer
what does a log 2-fold change values of mean ?
gene genesequencing motif microarray sequencing written 5 months ago by a4appy23 • 10
3
votes
1
answer
283
views
1
answer
Have several promoter sequences and wanna find out function of conserved motifs...
function meme motif written 5 months ago by pple2202 • 0 • updated 5 months ago by jared.andrews07 • 2.2k
1
vote
3
answers
329
views
3
answers
Consensus motif of closely related TFs
motif pwm sequence chip-seq transcription factor written 7 months ago by rbronste • 230 • updated 5 months ago by UnivStudent • 380
5
votes
1
answer
244
views
1
answer
Parsing AME tsv file
ame tsv meme motif bed written 5 months ago by rbronste • 230
0
votes
0
answers
167
views
0
answers
Less number of motifs found in the real network when compared to the random network
network motif written 6 months ago by The Last Word • 170
0
votes
0
answers
159
views
0
answers
a mouse reference TATA box
tata box motif written 6 months ago by zhongjw11 • 0
0
votes
0
answers
207
views
0
answers
Find methylated motifs in a plant genome from KineticsTool gff output
methylation kineticstool motif pacbio plant written 6 months ago by gabri • 50
1
vote
1
answer
245
views
1
answer
How to convert MEME MOTIF to all potential sequences?
rna meme motif sequences written 6 months ago by Oo • 0 • updated 6 months ago by jared.andrews07 • 2.2k
4
votes
2
answers
1.0k
views
2
answers
strand specificity of TFBS
binding transcription factor tfbs motif forum written 3.4 years ago by Chris Gene • 60 • updated 6 months ago by mt1022 • 180
0
votes
0
answers
292
views
0
answers
FIMO vs AME - true positive and false positives across search tools
ame fimo meme motif written 7 months ago by rbronste • 230 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
1.2k
views
0
answers
pssm.search from Bio.motifs not working with amino acid sequences
pssm pwm motif amino acid protein written 3.2 years ago by stefano • 0 • updated 6 months ago by RamRS ♦ 21k
0
votes
1
answer
335
views
1
answer
Downloading all Helix-turn-helix motif containing protein from bacteria
protein motif written 7 months ago by saadleeshehreen • 60 • updated 7 months ago by Elisabeth Gasteiger • 1.6k
18
votes
3
answers
5.1k
views
5 follow
3
answers
How To Find Any Of Many Motifs In Certain Sequences Using Perl?
perl sequence motif written 8.8 years ago by nikulina • 280 • updated 7 months ago by RamRS ♦ 21k
0
votes
0
answers
224
views
0
answers
from coordinate to motif
tfbs motif written 7 months ago by Shuang He • 0
5
votes
1
answer
460
views
1
answer
How to find protein motif in DNA sequence
sequence motif written 8 months ago by Benn ♦ 6.6k
1
vote
2
answers
1.1k
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2
answers
annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 19 months ago by reubenmcgregor88 • 40 • updated 8 months ago by CrisMar • 70
1
vote
0
answers
241
views
0
answers
How to find motif enrichment with IUPAC DNA fragment?
motif dna written 9 months ago by Shicheng Guo • 7.4k
0
votes
1
answer
386
views
1
answer
RSAT gives strange motif calls
motif rsat chip-seq written 13 months ago by rbronste • 230 • updated 10 months ago by Jaime Castro-Mondragon • 10
2
votes
1
answer
567
views
5 follow
1
answer
Motif database of choice
motif rsat chip-seq written 19 months ago by rbronste • 230 • updated 10 months ago by Zcat2010 • 0
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