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Recent Votes
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- A: count number of references with at least one hit
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- A: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera
- A: ENSEMBL annotation of genes start with "Gm" end with "Rik"
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Recent Replies
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C: ENSEMBL annotation of genes start with "Gm" end with "Rik" by
SMILE • 110
Thank you Emily! It is good to know your opinions. How can I know more about the resources and ev...
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C: count number of references with at least one hit by
vmicrobio • 240
and `wc -l` output file
-
A: Gene counts & expression level by
h.mon ♦ 28k
With most regular datasets, we really can't say if a gene is expressed or not. I think to be conf...
-
C: count number of references with at least one hit by
vmicrobio • 240
I had to format a little bit the heads of multifasta file but it works. Thanks a lot!
-
C: Error building local BLAST database with update_blastdb.pl: Error "Can't locate by
marongiu.luigi • 420
I thought that post was closed. I downloaded blast, place it in a folder and add the path to .bashrc
-
C: Gene counts & expression level by
ATpoint ♦ 26k
Please see on of the many previous questions on this: https://www.biostars.org/p/210619/ https:...
-
C: Calculate Fis (inbreeding coefficient) by
RamRS ♦ 24k
OP has not mentioned that they're using stacks - they only mention VCFtools. Given that, I'm movi...
-
A: ENSEMBL annotation of genes start with "Gm" end with "Rik" by
Emily_Ensembl ♦ 19k
You could just use a RegEx if you're really keen to filter them. But they're real genes - we just...
-
C: Error building local BLAST database with update_blastdb.pl: Error "Can't locate by
genomax ♦ 74k
Looks like you already posted in https://www.biostars.org/p/278249/. Did the solutions there not ...
-
C: Download of FASTQ files from the European Nucleotide Archive (ENA) using Aspera by
r.castellan • 0
It's running nicely, the session is timing out every now and then on certain files, is there a wa...
-
C: Error building local BLAST database with update_blastdb.pl: Error "Can't locate by
marongiu.luigi • 420
$ perl ~/src/anaconda/bin/update_blastdb.pl Can't locate List/MoreUtils.pm in @INC (you m...
-
C: Error building local BLAST database with update_blastdb.pl: Error "Can't locate by
genomax ♦ 74k
So run it with `perl ~/src/anaconda/bin/update_blastdb.pl` if you want to update your local blast...
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