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90
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Is there a tool that finds a given amino-acid sequence in a given secondary structure?
software motif secondary structure tool written 23 days ago by homeo.morphizm • 0
2
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2
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509
views
2
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 21 months ago by venuraherath • 20 • updated 6 weeks ago by letunic • 10
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1
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975
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1
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How to read AlignACE result?
alignace discovery motif tfbs dna written 4.6 years ago by allyson1115ar • 20 • updated 9 weeks ago by chernouhov sergey • 40
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0
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98
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HOMER Known Motifs - Genome-wide predictions
homer motif human zoops written 10 weeks ago by Sergio • 0
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0
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121
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0
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What should I provide as input for Tomtom: PPMs or PWMs?
meme tomtom motif written 12 weeks ago by chipolino • 40
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163
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Profile HMM to find sequence motif using Baum-Welch instead of using a given multiple sequence alignment?
hmm motif hidden markov model transcription factor written 3 months ago by guixien • 0
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1
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1.0k
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1
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Use PWM from CISBP-rna to find motif with MEME (FIMO)
cisbp meme motif written 2.2 years ago by ZheFrench • 270 • updated 4 months ago by biofalconch • 430
1
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1
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148
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1
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What's the point in estimating the background distribution in probabilstic models of motif finding such as MEME (mixture model with EM) or some HMM?
motif sequence homology sequence analysis written 4 months ago by guixien • 0 • updated 4 months ago by Mensur Dlakic • 3.4k
1
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1
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195
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1
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Is it possible to convert Minimal MEME Motif Format to PFMatrix
motif meme pfm written 4 months ago by guandongshang • 0 • updated 4 months ago by Mensur Dlakic • 3.4k
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1.8k
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Programm/tool for drawing promoter motif image
image R promoter motif written 4.0 years ago by teresa.noviello89 • 0 • updated 5 months ago by Biostar ♦♦ 20
0
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1
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315
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1
answer
Biopython Bio.motifs: How to create a motif object with aligned sequences
python alignment motif written 5 months ago by kinetic • 0 • updated 5 months ago by Eric Lim • 1.6k
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0
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116
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0
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motif discovery for small set of genes
gene expression motif written 5 months ago by Calangoa • 30
3
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1
answer
389
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1
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Running meme suite FIMO in parallel
mpi motif transcription written 6 months ago by Marouen Ben Guebila • 0 • updated 6 months ago by RamRS ♦ 25k
2
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1
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1.9k
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8 follow
1
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How to search for consensus sequence in RNA-seq data?
transcription factor motif rna-seq written 2.7 years ago by mamao • 0 • updated 7 months ago by Biostar ♦♦ 20
2
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1
answer
239
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1
answer
Which transcriptin factor bind to specific motif in mouse
motif written 7 months ago by Calangoa • 30 • updated 7 months ago by RamRS ♦ 25k
3
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1
answer
1.6k
views
1
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Obtaining transcription factors from DNA consensus motif
meme motif tf transcription factors written 5.5 years ago by drautuna • 60 • updated 7 months ago by ATpoint ♦ 29k
1
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2
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410
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2
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from coordinate to motif
tfbs motif written 18 months ago by Shuang He • 0 • updated 8 months ago by Alex Reynolds ♦ 29k
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3
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293
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3
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Motif analysis in repeat-rich ChIP-seq data?
chip-seq meme motif written 9 months ago by robbuurstede • 0 • updated 9 months ago by simon.vanheeringen • 180
2
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2
answers
258
views
2
answers
find transcription factor binding site with small sequence from UCSC
bindingsite motif ucsc written 9 months ago by kdc15 • 30 • updated 9 months ago by geek_y ♦ 10k
2
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0
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484
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0
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How to find motif enrichment with IUPAC DNA fragment?
motif dna written 19 months ago by Shicheng Guo • 8.0k • updated 9 months ago by max.rempel2 • 0
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0
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242
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Finding repeats in proteins
software repeats finder motif written 9 months ago by newacclol • 10 • updated 9 months ago by RamRS ♦ 25k
2
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0
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470
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0
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Issue with replicating from a research paper-motifs
fasta rna meme sequence motif written 9 months ago by joshua.steier • 20 • updated 9 months ago by geek_y ♦ 10k
4
votes
1
answer
416
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1
answer
Converting motif databases from meme suite to other formats
meme format motif written 10 months ago by nanoide • 40 • updated 10 months ago by Alex Reynolds ♦ 29k
3
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0
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368
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0
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Weighted sequence logos and motifs
motif logo written 11 months ago by Sergio Martínez Cuesta • 60
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0
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216
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0
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difference between expectation maximisation and hypergeometric distribution for motif finding
motif hypergeometric distribution em written 11 months ago by kdc15 • 30
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0
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305
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0
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Reinfrorce motif search with knowledge of protein sequence / structure
motif protein written 11 months ago by massa.kassa.sc3na • 230 • updated 11 months ago by ATpoint ♦ 29k
2
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2
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697
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2
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Convert Fasta format to MEME-motif format
meme-suite fimo format conversion motif fasta written 12 months ago by kashiff007 • 130
0
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0
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470
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0
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Extract novel motifs from protein multiple sequence alignment
R alignment motif written 13 months ago by BioAnna • 0
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0
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257
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0
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significance evaluation of Motif identified by SeqLogo
alignment sequence motif written 14 months ago by weixiaokuan • 90
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1
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1.2k
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1
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Motif discovery using MEME
meme motif conserved domain written 3.2 years ago by #### • 190 • updated 14 months ago by Biostar ♦♦ 20
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