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How to get the target sequence of matching consensus motif using Seqkit?
seqkit motif promoter written 9 days ago by 2021yearsold • 0
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128
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HOMER html output compared with homerMotifs.all.motifs are different
homer motif written 8 weeks ago by testtube • 10
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137
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infer NFRs from H3K27Ac ChIP-Seq data?
chip-seq next-gen motif nfr written 10 weeks ago by ZUCM • 0
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142
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findMotif p-value dependency
homer motif written 3 months ago by floriandeckert • 0
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160
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0
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Find motifs relative location to features
fimo meme motif written 3 months ago by Ruixuan • 0
2
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1
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198
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1
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How toconvert a set of motif consensus sequences in IUPAC to meme format?
fimo meme motif transfac meme suite written 3 months ago by ilovesuperheroes1993 • 0 • updated 3 months ago by shenwei356 ♦ 5.7k
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1
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Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 2.8 years ago by endrebak • 840 • updated 4 months ago by jared.andrews07 ♦ 8.3k
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4
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1.1k
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4
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Find out motif
motif written 4.8 years ago by Zaved Hazarika • 0 • updated 4 months ago by Biostar ♦♦ 20
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155
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hexamer match recursive subsetting
R sequence motif biostrings hexamers written 4 months ago by alfonso • 0
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1
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159
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1
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How to set the motif length in MEME.
chip-seq meme motif written 4 months ago by feng920308 • 0 • updated 4 months ago by JC ♦ 12k
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249
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how to set a appropriate background file when using HOMER findMotifGenome.pl
homer motif written 6 months ago by guandongshang • 0
3
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311
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Every time the results of findMotifGenome.pl in HOMER is different
homer motif written 6 months ago by guandongshang • 0
3
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1
answer
229
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1
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Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 6 months ago by gabri • 50 • updated 6 months ago by Joe ♦ 18k
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341
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HOMER hg19 not found in config.txt
homer finding motif written 7 months ago by jeni • 30
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1
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196
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5 follow
1
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Best practice to find regulatory motifs in a set of sequences
finding motif regulatory written 7 months ago by jeni • 30 • updated 7 months ago by Mensur Dlakic • 8.3k
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162
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Graphprot interpretation for instances of binding sites
graphprot clipseq motif training testing written 7 months ago by Aishwarya Kulkarni • 80
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200
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Is there a tool that finds a given amino-acid sequence in a given secondary structure?
software motif secondary structure tool written 12 months ago by homeo.morphizm • 0 • updated 10 months ago by Biostar ♦♦ 20
1
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1
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233
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1
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Using MEME-suite to find sigma-factor binding sites (or other broad motifs)
meme-chip meme suite meme motif chip-seq written 10 months ago by predeus • 1.4k • updated 10 months ago by Asaf ♦ 8.5k
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330
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How to get Motif positions by peak (not by Chromosome) using Homer annotatePeaks.pl ??
homer annotatepeaks peakid positions motif written 10 months ago by carina2817 • 20
2
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2
answers
741
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2
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 2.7 years ago by venuraherath • 20 • updated 12 months ago by letunic • 10
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1
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1.1k
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1
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How to read AlignACE result?
alignace discovery motif tfbs dna written 5.6 years ago by allyson1115ar • 20 • updated 13 months ago by chernouhov sergey • 50
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297
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HOMER Known Motifs - Genome-wide predictions
homer motif human zoops written 13 months ago by Sergio • 0
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261
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What should I provide as input for Tomtom: PPMs or PWMs?
meme tomtom motif written 14 months ago by chipolino • 50
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305
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0
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Profile HMM to find sequence motif using Baum-Welch instead of using a given multiple sequence alignment?
hmm motif hidden markov model transcription factor written 14 months ago by guixien • 0
2
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1
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1.5k
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1
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Use PWM from CISBP-rna to find motif with MEME (FIMO)
cisbp meme motif written 3.1 years ago by ZheFrench • 310 • updated 15 months ago by biofalconch • 470
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1
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286
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1
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What's the point in estimating the background distribution in probabilstic models of motif finding such as MEME (mixture model with EM) or some HMM?
motif sequence homology sequence analysis written 15 months ago by guixien • 0 • updated 15 months ago by Mensur Dlakic • 8.3k
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1
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461
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1
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Is it possible to convert Minimal MEME Motif Format to PFMatrix
motif meme pfm written 16 months ago by guandongshang • 0 • updated 16 months ago by Mensur Dlakic • 8.3k
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2.1k
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Programm/tool for drawing promoter motif image
image R promoter motif written 4.9 years ago by teresa.noviello89 • 0 • updated 16 months ago by Biostar ♦♦ 20
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1
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829
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1
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Biopython Bio.motifs: How to create a motif object with aligned sequences
python alignment motif written 16 months ago by kinetic • 0 • updated 16 months ago by Eric Lim • 1.7k
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223
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motif discovery for small set of genes
gene expression motif written 16 months ago by Calangoa • 30
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