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<prev • 234 results • page 1 of 8 • next >
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pssm.search from Bio.motifs not working with amino acid sequences
pssm pwm motif amino acid protein written 2.6 years ago by stefano • 0 • updated 1 hour ago by Ram ♦ 17k
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1
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52
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1
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Consensus motif of closely related TFs
motif pwm sequence chip-seq transcription factor written 1 day ago by rbronste • 170 • updated 1 day ago by goodez • 260
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1
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118
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1
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Downloading all Helix-turn-helix motif containing protein from bacteria
protein motif written 10 days ago by saadleeshehreen • 40 • updated 5 days ago by Elisabeth Gasteiger • 1.5k
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3
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4.7k
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5 follow
3
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How To Find Any Of Many Motifs In Certain Sequences Using Perl?
perl sequence motif written 8.3 years ago by nikulina • 280 • updated 12 days ago by Ram ♦ 17k
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101
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FIMO vs AME - true positive and false positives across search tools
ame fimo meme motif written 15 days ago by rbronste • 170
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118
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from coordinate to motif
tfbs motif written 23 days ago by Shuang He • 0
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1
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196
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1
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How to find protein motif in DNA sequence
sequence motif written 6 weeks ago by b.nota ♦ 4.9k
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2
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714
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2
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annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 12 months ago by reubenmcgregor88 • 40 • updated 8 weeks ago by CrisMar • 70
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120
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How to find motif enrichment with IUPAC DNA fragment?
motif dna written 9 weeks ago by Shicheng Guo • 6.5k
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1
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255
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1
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RSAT gives strange motif calls
motif rsat chip-seq written 6 months ago by rbronste • 170 • updated 3 months ago by Jaime Castro-Mondragon • 0
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1
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423
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5 follow
1
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Motif database of choice
motif rsat chip-seq written 12 months ago by rbronste • 170 • updated 3 months ago by Zcat2010 • 0
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1
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345
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1
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FIMO target coordinates in fasta file
fasta fimo meme motif written 8 months ago by rbronste • 170 • updated 4 months ago by ATpoint ♦ 7.5k
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165
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finds motif in long sequence using meme
meme bacteria motif written 4 months ago by shira.zaltsman • 0 • updated 4 months ago by Devon Ryan ♦ 84k
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1
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194
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1
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 4 months ago by venuraherath • 10 • updated 4 months ago by Sishuo Wang • 140
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2
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236
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2
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Extracting the exact motif location from FIMO
fimo meme motif chip-seq written 5 months ago by rbronste • 170 • updated 5 months ago by h.mon ♦ 19k
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1
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205
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1
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motif detection from predicted gene models
motif rna-seq written 5 months ago by Kay • 0 • updated 5 months ago by Carambakaracho • 510
2
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1
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970
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8 follow
1
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How to search for consensus sequence in RNA-seq data?
transcription factor motif rna-seq written 16 months ago by mamao • 0 • updated 5 months ago by Kay • 0
4
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2
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393
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2
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DNA Motif discovery from a large number of FASTA sequences
sequence alignment motif written 5 months ago by flyguymail22 • 0 • updated 5 months ago by c.chakraborty • 80
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200
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Setting/finding the log odds detection threshold in custom homer PWMs
homer jaspar motif written 5 months ago by endrebak • 680
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185
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0
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Homer [findMotifsGenome.pl] result interputation.
homer chip-seq motif written 5 months ago by chiefcat • 70
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220
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match, mismatch, gap parameters for short DNA motifs
motif pairwise alignment dna written 6 months ago by odoluca • 20
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1
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205
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1
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Interpreting the output of an mRNA structural motif search algorithm
mrna motif structure written 7 months ago by Joel Wallenius • 10 • updated 7 months ago by Martombo • 2.2k
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2
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3.1k
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2
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Strandedness Of Homer For Motif Analysis
sequence motif written 5.6 years ago by user • 770 • updated 8 months ago by Biostar ♦♦ 20
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1
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587
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1
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How to find list of gene name from HOMER motif output
homer motif written 8 months ago by Mike • 1.0k • updated 8 months ago by mcjmigdal • 10
3
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2
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224
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2
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How to retrieve all pentamer from a sequence?
pentamer sequence motif written 8 months ago by haro • 230 • updated 8 months ago by genomax ♦ 55k
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281
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FIMO outputs only Chr1 hits
fimo meme motif written 8 months ago by rbronste • 170 • updated 8 months ago by Satyajeet Khare • 1.3k
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1
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380
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1
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De-novo motif discovery and repeats
de novo fimo meme motif written 8 months ago by rbronste • 170 • updated 8 months ago by Alex Reynolds ♦ 25k
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479
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How to build HMM from position weight matrix?
motif meme hmm pwm written 9 months ago by jespinoz • 20
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446
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Use PWM from CISBP-rna to find motif with MEME (FIMO)
cisbp meme motif written 9 months ago by ZheFrench • 140
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657
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HOMER target sequence location
homer chip-seq motif written 19 months ago by rbronste • 170 • updated 9 months ago by bsharmi6 • 20
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