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<prev • 210 results • page 1 of 7 • next >
2
votes
1
answer
122
views
1
answer
Eliminating repetetive motifs found by MEME
motif meme chip-seq written 6 days ago by rbronste • 140 • updated 6 days ago by Alex Reynolds ♦ 20k
0
votes
0
answers
104
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0
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MEME motif width
chip-seq meme motif written 7 days ago by rbronste • 140
0
votes
1
answer
126
views
1
answer
annotatePeaks.pl Homer using "RNA"
homer chip-seq motif written 8 days ago by reubenmcgregor88 • 30 • updated 8 days ago by genomax ♦ 33k
1
vote
1
answer
118
views
1
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Motif database of choice
motif rsat chip-seq written 12 days ago by rbronste • 140 • updated 12 days ago by jared.andrews07 • 80
0
votes
1
answer
170
views
1
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Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
homer chip-seq motif written 17 days ago by chiefcat • 70 • updated 16 days ago by ildem • 20
0
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1
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315
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1
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RNA Motif discovery tools
rna discovery motif tools cmfinder written 7 months ago by arunbodd • 0 • updated 21 days ago by jaimep887 • 0
0
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0
answers
177
views
0
answers
Motif prediction in Bacteria species using HOMER [Chip-seq]
genome motif next-gen chip-seq written 28 days ago by anupriyaverma1408 • 100
4
votes
1
answer
215
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6 follow
1
answer
TF motif binding region searching script in human genome
motif logo written 3 months ago by Shicheng Guo • 4.5k
0
votes
1
answer
178
views
1
answer
motif and domain finder
domain alignment motif tool written 5 weeks ago by misbahabas • 30 • updated 5 weeks ago by Sej Modha • 1.8k
2
votes
1
answer
251
views
6 follow
1
answer
How to search for consensus sequence in RNA-seq data?
transcription factor motif rna-seq written 3 months ago by mamao • 0 • updated 8 weeks ago by Alex Reynolds ♦ 20k
0
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0
answers
124
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0
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Background letter frequencies
fimo meme motif written 3 months ago by sangram_keshari • 0
1
vote
0
answers
156
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0
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biostrings and seqlogo lowercase and uppercase fasta
seqlogo motif written 3 months ago by novicebioinforesearcher • 30
6
votes
2
answers
182
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2
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I have DNA motifs 6-12 bp long. Trying to get conservation measurements for them.
conservation motif written 3 months ago by ericbrenner • 0 • updated 3 months ago by shenwei356 • 3.3k
3
votes
4
answers
275
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5 follow
4
answers
Best tool to find potential TF binding sites within a specific DNA sequence?
binding sequence motif tf written 3 months ago by wildtype • 10 • updated 3 months ago by Whoknows • 590
28
votes
5
answers
2.9k
views
8 follow
5
answers
Represent Motifs On A Dna Sequence In A Graphical Way
motif visualization written 4.9 years ago by novino11 • 90 • updated 4 months ago by Biostar ♦♦ 20
14
votes
1
answer
356
views
1
answer
Probability of finding a common sub-sequence of at least 'k' nucleotides between two sequences.
k-mer probability motif substring probabilities written 4 months ago by Carlo Yague • 3.2k • updated 4 months ago by Brian Bushnell ♦ 14k
3
votes
1
answer
237
views
1
answer
Long Motif Predicted by MEME SUITE
chip-seq motif written 4 months ago by fusion.slope • 120 • updated 4 months ago by Biojl • 1.5k
0
votes
0
answers
164
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0
answers
Blast non-contiguous sequences on same protein
non-contiguous motif blast written 5 months ago by michaelsacco • 0
2
votes
1
answer
228
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1
answer
Recommendations for a good motif-finder, for short K-mers?
k-mer motif written 6 months ago by blur • 50 • updated 5 months ago by le2336 • 60
2
votes
1
answer
245
views
1
answer
bamtools filter specific motif sequence
filter motif bamtools written 6 months ago by devin.porter92 • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 98k
0
votes
0
answers
195
views
0
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Running RSAT motif discovery on a computing cluster
motif rsat chip-seq written 6 months ago by rbronste • 140
0
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0
answers
204
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0
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compare motif enrichment across 3 different genomic regions
motif enrichment motif chip-seq written 6 months ago by mariamari693693 • 10
0
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0
answers
329
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0
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MEME vs. HOMER for de novo and known Motif finding
homer meme chip-seq motif written 6 months ago by rbronste • 140
2
votes
1
answer
292
views
1
answer
FIMO GFF output to standard BED
fimo chip-seq motif sequencing written 6 months ago by rbronste • 140 • updated 6 months ago by Alex Reynolds ♦ 20k
0
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0
answers
249
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0
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HOMER target sequence location
homer chip-seq motif written 6 months ago by rbronste • 140
0
votes
1
answer
331
views
1
answer
Cytoscape Motif-Discovery plugin
motif cytoscape written 7 months ago by The Last Word • 100 • updated 6 months ago by piet.amc • 0
0
votes
0
answers
202
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0
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meme mast for overlapping sequences
meme motif mast written 7 months ago by varsha619 • 20
0
votes
0
answers
549
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0
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pssm.search from Bio.motifs not working with amino acid sequences
pssm pwm motif amino acid protein written 19 months ago by stefano • 0 • updated 7 months ago by Biostar ♦♦ 20
1
vote
0
answers
324
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0
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Output file of motif instances
homer motif mscentipede written 7 months ago by rbronste • 140 • updated 7 months ago by geek_y ♦ 8.0k
0
votes
3
answers
346
views
3
answers
TF motif half-site enrichment
motif written 8 months ago by varsha619 • 20 • updated 8 months ago by apa@stowers • 320
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