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<prev • 23 results • page 1 of 1 • next >
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Tool: pytfmpval: Efficient, accurate p-value computation for position weight matrices
pwm tool p-value python chip-seq motifs written 12 months ago by jared.andrews07 • 3.1k • updated 24 days ago by caokai001 • 0
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357
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Differences between motif enrichment analysis and footprinting in the context of DNAse-seq/ATAC-seq
atac-seq footprinting dnase-seq motifs written 6 months ago by nanoide • 30 • updated 6 months ago by geek_y ♦ 9.9k
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463
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1
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Help with HOMER motif profile plots
homer motifs written 7 months ago by venu ♦ 6.3k
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2
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299
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5 follow
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Get -400bp to +50bp sequence of gene from gff3 file
upstream promoter downstream motifs written 7 months ago by Biogeek • 350 • updated 7 months ago by Alex Reynolds ♦ 28k
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2
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RNA-binding motifs matching
motifs tomtom protein rna-binding written 9 months ago by kowdelta • 0 • updated 9 months ago by Alex Reynolds ♦ 28k
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FIMO output that preserves padj values
fimo meme deseq2 chip-seq motifs written 12 months ago by rbronste • 260
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1
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Homer error (findMotifs.pl) : are you sure you chose the right length for motif finding?
homer chip-seq motifs written 13 months ago by salamandra • 230 • updated 13 months ago by Kevin Blighe ♦ 48k
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How to use a specific promoter set on findMotifs.pl of HOMER?
homer promoter set chip-seq motifs written 13 months ago by salamandra • 230 • updated 13 months ago by Kevin Blighe ♦ 48k
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Finding motifs using MSA?
bioinformatics alignment motifs written 18 months ago by Tamador • 10 • updated 18 months ago by Buffo • 1.7k
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Where are .motif files from homer knownResults?
homer chip-seq atac-seq motifs written 2.1 years ago by Benn ♦ 7.7k • updated 23 months ago by Malcolm.Cook • 1.1k
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Tool: GimmeMotifs 0.11.1: for all your transcription factor motif needs
transcription factor chip-seq tool regulatory motifs written 2.1 years ago by simon.vanheeringen • 170
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Interpret fimo results in negative strand
fimo transcription factors motifs written 2.2 years ago by anshupa.vssut • 50 • updated 2.2 years ago by genomax ♦ 71k
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Novel RNA motif functional analysis
functions motifs written 2.6 years ago by john • 30 • updated 2.5 years ago by Biostar ♦♦ 20
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Homer findMotifsGenome.pl error
homer chip-seq atac-seq motifs written 2.6 years ago by lvande • 50
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1
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Visualization of Motif synteny
synteny motifs written 2.6 years ago by arunprasanna83 • 30 • updated 2.6 years ago by natasha.sernova • 3.6k
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How to search with a motif matrix against my own sequences?
jaspar motifs written 2.9 years ago by RNAseq • 0 • updated 2.9 years ago by Santosh Anand ♦ 4.9k
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1
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Compare two sets of sequences generating similar PWM (logos)
pwm sequence logo motifs written 3.1 years ago by fernando.cid • 20 • updated 3.1 years ago by Biojl • 1.7k
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How to plot Motifs in igraph?
ppi igraph motifs written 3.2 years ago by Saeed Rahmani • 10
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how to find motif across few protein sequences ?
sequence alignment proteins motifs written 3.3 years ago by Learner • 180 • updated 3.3 years ago by ALchEmiXt • 1.9k
3
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Motifs data base
dreme motifs rna-seq dna written 3.4 years ago by abc • 30 • updated 3.4 years ago by Girolamo • 140
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Repetitive motifs on Illumina 450k derived sequences
450k dna methylation meme motifs illumina written 3.7 years ago by gbayon • 160
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1
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Sequence clustering and motif identification.
alignment sequence clustering motifs written 4.4 years ago by gtho123 • 210 • updated 4.4 years ago by dago • 2.5k
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Co-occurring TF motifs in peak file from ChIP-seq experiment
chip-seq motifs written 5.1 years ago by Dataminer • 2.6k • updated 5.1 years ago by Ming Tang • 2.5k
<prev • 23 results • page 1 of 1 • next >
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