mphf Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: mphf • reset

or Classic search

votes

answer

512

views

answer

Error: MPHF is not injective in Minia

error minia mphf assembly genome written 14 months ago by k.e.cadorna • 0 • updated 11 months ago by Rayan Chikhi • 1.4k

Recent Votes

Recent Locations • All »

Limoges, CBRS, France, 2 minutes ago
London, 3 minutes ago
Iran, Islamic Republic Of, 4 minutes ago
UK, 4 minutes ago

Recent Awards • All »

Teacher to h.mon ♦ 18k
Scholar to h.mon ♦ 18k
Scholar to Michael Dondrup ♦ 44k
Teacher to Kevin Blighe ♦ 26k
Guru to grant.hovhannisyan • 1000
Teacher to Bastien Hervé • 1.7k

Recent Replies

C: Efficiently aligning a lot of reads on the same small reference sequence by cedric.stroobandt • 0
The data is indeed fastq format. I was mainly wondering if there existed specific alignment meth...
C: Deseq2: What is the most correct experimental design for this experiment? by Devon Ryan ♦ 82k
I must have misunderstood at some point, I though you were interested in CD40 status. Yes, if you...
C: Question about the output of hicexplorer hicPCA by Devon Ryan ♦ 82k
The sign in PCA is arbitrary, you'll get opposite signs randomly depending on how exactly the PCA...
A: Easier Method to Make a Bioinformatics Pipeline Available on the Web by Devon Ryan ♦ 82k
The only commonly used tool like this is Galaxy, for which you simply write an XML wrapper for ea...
C: Did anyone manage to successfully run HLAScan and get results? by Shiqi Li • 0
But I don't know why get relatively output? And have you met similar problem?
A: which gap filler do you recommend? by k.kathirvel93 • 70
I would recommend Genome finishing module from CLCGenomicsworkbench. Go with trail version if yo...
C: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kristin Muench • 280
Regarding when to use SVA - thanks, helpful to have an example for how it is deployed. I think I'...
C: Very low unique mapped reads - STAR alignment by junsionglow • 20
Hi h.mon, it worked wonderfully, now I have over 80% unique maps! thanks again!
C: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kristin Muench • 280
Thank you so much for your detailed answer! I'll address different parts of your post in unique c...
C: Alignment with BWA and SAMtools by finswimmer ♦ 4.4k
Hello Shello, now we are back to the questions I asked at the very [beginning][1]. And: What kin...
C: How many reads should I expect for paired end reads when coverage = 30 million? by Eric Lim • 870
It's most likely 15M per end, which is on the low end. As reads can be of varying lengths, I pref...
A: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kevin Blighe ♦ 26k
The starting point to any RNA-seq experiment should be a well-designed study that negates the nee...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1293 users visited in the last hour