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written 15 months ago by
k.e.cadorna • 0
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13 months ago by
Rayan Chikhi • 1.4k
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Recent Replies
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C: DESeq2 DEG analysis using different sequencing depth data by
woongjaej • 10
Hi h.mon! 1. Reads of high and low depth samples are about 100million and 10million reads each....
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C: toil stats under-reporting memory usage? by
ionox0 • 160
It's actually the full sized hg19 reference, would you happen to be able to confirm the units for...
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C: Finding and downloading many Gene Expression Matrices from GEO? by
breckuh • 10
Thanks Kevin! What I found was that for single cell experiments, the common practice was to store...
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genomax ♦ 57k
Since this refers to proprietary software from Thermo, your best bet to get timely support is to ...
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C: Can you assemble with merged paired end reads and unmatched reads as "single end by
genomax ♦ 57k
Unless you have a really high number of singletons, I suggest that you ignore them for now and tr...
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A: What does SNP mean in data from an Illumina MetaboChip final report? by
h.mon ♦ 20k
The last columns are the reference and alternative alleles. For example, for the first SNP (chr1:...
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C: conversion binary to ATGC by
h.mon ♦ 20k
This format is the output from which program? Aren't there any accompanying input / output files?...
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C: Sorting fq data into groups with missing barcode info? by
swbarnes2 ♦ 4.1k
Your barcoding must be non-standard, so how can anyone understand it if you don't explain it?
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C: toil stats under-reporting memory usage? by
h.mon ♦ 20k
For bwa mem, memory usage would depend mainly on genome index size, not fastq size. Is your refer...
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C: Identification of haplotype blocks by
jianhaichen • 0
Did you solve this problem? I met a similar problem. I need to compute phylogeny for each haploty...
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C: Genomic coordinates from GENCODE annotation file by
PedroBarbosa • 0
How did you make that bed file ? There should be only one gene record in the whole gtf pointing f...
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C: "Duplicate rownames not allowed" when the rownames are not duplicated by
Kevin Blighe ♦ 30k
Thanks for checking in and following up, Michael!
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