Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: mpileup • reset
or   Classic search
<prev • 162 results • page 1 of 6 • next >
2
votes
1
answer
95
views
1
answer
Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 7 days ago by kennethlim206 • 0 • updated 7 days ago by Brian Bushnell ♦ 14k
2
votes
0
answers
160
views
0
answers
Reads at position using samtools mpileup
samtools mpileup written 6 weeks ago by charlotte • 0
4
votes
1
answer
173
views
1
answer
Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 6 weeks ago by cjaln • 0 • updated 6 weeks ago by John Marshall • 1.1k
1
vote
0
answers
255
views
0
answers
Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 3 months ago by divya • 10 • updated 7 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
228
views
1
answer
How to filter a multisample VCF based on individual sample depth?
vcf samtools mpileup gbs written 3 months ago by jtwalker • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 99k
1
vote
0
answers
358
views
0
answers
Read depth calling for X chromsome - script modification
read depth calling samtools mpileup written 15 months ago by mbhargava2003 • 0 • updated 4 months ago by Biostar ♦♦ 20
3
votes
2
answers
787
views
6 follow
2
answers
samtools mpileup output documentation
samtools mpileup output written 5 months ago by bec • 10 • updated 5 months ago by James Bonfield • 110
1
vote
1
answer
291
views
1
answer
Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 6 months ago by devin.porter92 • 0 • updated 6 months ago by Brian Bushnell ♦ 14k
0
votes
0
answers
248
views
0
answers
mpileup for PacBio reads
quiver calling pacbio mpileup variants written 6 months ago by Biomonika (Noolean) ♦ 3.0k
1
vote
1
answer
169
views
1
answer
Pileup file and order of the individuals
order samtools mpileup written 7 months ago by AP • 60
3
votes
0
answers
415
views
0
answers
How can I input a BAM file to the samtools mpileup command without using a text file?
variant calling bam samtools mpileup written 7 months ago by cristian • 80 • updated 7 months ago by genomax ♦ 34k
0
votes
1
answer
215
views
1
answer
emtpy bcf file
alignment samtools mpileup written 8 months ago by Illinu • 90
3
votes
3
answers
882
views
3
answers
Generate Consensus sequence from BAM file
psmc samtools mpileup written 8 months ago by SOHAIL • 90
5
votes
0
answers
505
views
5 follow
0
answers
Samtools: merge and mpileup vs mpileup alone for variant-calling with multiple BAM
variant-calling merge samtools mpileup snp written 8 months ago by Rob • 90
0
votes
1
answer
328
views
1
answer
Bam-readcounts min-base-quality not giving expected output
bam-readcount mpileup written 8 months ago by sheenams • 50 • updated 8 months ago by Chris Miller ♦ 18k
0
votes
0
answers
293
views
0
answers
Why does mpileup tell me the starting and ending base of a read?
samtools mpileup written 9 months ago by Peavil • 10
0
votes
1
answer
412
views
1
answer
why allelic count on forward and reverse strand do not add up to depth in the results of samtools mpileup?
vcf samtools mpileup written 9 months ago by murathong • 100 • updated 9 months ago by Tom_L • 210
0
votes
1
answer
302
views
1
answer
What is mean that mpileup read depth (read count) 0?
samtools mpileup written 9 months ago by Peavil • 10 • updated 9 months ago by Devon Ryan ♦ 71k
0
votes
1
answer
395
views
1
answer
Different output from pileup and mpileup commands VarScan
varscan mpileup written 9 months ago by agata88 • 620
5
votes
2
answers
3.6k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 5.6 years ago by Vittorio Fortino • 20 • updated 9 months ago by Biostar ♦♦ 20
8
votes
1
answer
722
views
1
answer
How best to parse samtools mpileup results?
vcf samtools vcftools mpileup written 9 months ago by yarmda • 0 • updated 9 months ago by Pierre Lindenbaum ♦ 99k
0
votes
0
answers
305
views
0
answers
Variant calling - display nucleotides with 0 coverage
vcf samtools bcftools mpileup bcf written 10 months ago by yarmda • 0
2
votes
1
answer
320
views
1
answer
How to output all variant alleles at a given site, regardless of quality
variant snp mpileup written 10 months ago by correlationmatrix • 20 • updated 10 months ago by Brian Bushnell ♦ 14k
2
votes
0
answers
331
views
0
answers
Samtools mpileup - Individual Pile-ups vs Group Pile-ups
samtools snp mpileup sequencing written 10 months ago by jrh154 • 0
0
votes
1
answer
436
views
1
answer
varscan misses alternate variant alleles
variant freebayes insertion mpileup deletion written 11 months ago by mark.rose • 10
0
votes
1
answer
369
views
1
answer
MPile up Result contains "X" in Alt column
galaxy samtools mpileup written 12 months ago by Bioinformatician_in_trouble • 10
5
votes
1
answer
1.6k
views
1
answer
Difference between samtools DEPTH and MPILEUP
reads samtools chip-seq mpileup depth written 12 months ago by ariel.balter • 110 • updated 12 months ago by Devon Ryan ♦ 71k
3
votes
0
answers
449
views
0
answers
Samtools' mpileup with pysam: enabling and disabling BAQ probabilistic realignment
samtools pysam mpileup written 12 months ago by abascalfederico • 970
12
votes
5
answers
8.8k
views
10 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 5.3 years ago by Empyrean • 150 • updated 12 months ago by stephanieP • 0
2
votes
1
answer
546
views
1
answer
Assign missing genotype (./. or N/N) for a SNP in vcf file if DP=0
vcf variant snp mpileup written 12 months ago by berge2015 • 70
<prev • 162 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • USA/Boston, 7 minutes ago
  • UK, 9 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1057 users visited in the last hour