Showing: mpileupreset
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Bcftools view options for SNPs calling.
bcftools samtools snp mpileup written 3.2 years ago by Eddie_I10 • updated 5 weeks ago by Kevin Blighe28k
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Order of samtools mpileup - arbitrary or not?
samtools mpileup written 5 weeks ago by blur90 • updated 5 weeks ago by Devon Ryan84k
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Calculate average mapping quality at a position
mapping quality mpileup written 6 weeks ago by hpapoli60 • updated 6 weeks ago by Gabriel R.2.5k
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Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 14 months ago by divya20 • updated 10 weeks ago by swbarnes24.0k
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Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 12 weeks ago by blur90 • updated 12 weeks ago by Devon Ryan84k
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Samtools mpileup returns empty vcf file
samtools mpileup written 3 months ago by shreyasibiswas8830 • updated 3 months ago by Ram17k
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Samtools mpileup meaning of IMF and IDV
vcf samtools mpileup written 3.0 years ago by cruckert810 • updated 4 months ago by elzedleeu0
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samtools mpileup output only contains vcf header
variant calling samtools mpileup written 4 months ago by s10206012510 • updated 4 months ago by swbarnes24.0k
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 5 months ago by Noam Teyssier10 • updated 5 months ago by Kevin Blighe28k
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error while using " samtools mpileup " function
headers read_group samtools mpileup error written 7 months ago by ricfoz20 • updated 7 months ago by Devon Ryan84k
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Why does mpileup tell me the starting and ending base of a read?
samtools mpileup written 20 months ago by Peavil10 • updated 8 months ago by Vasisht150
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 17 months ago by Biomonika (Noolean)3.0k • updated 9 months ago by tjduncan190
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Samtools mpileup: AF1 and DP4 not provided
samtools mpileup af1 info written 10 months ago by filippo.martignano0 • updated 10 months ago by Kevin Blighe28k
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Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 17 months ago by devin.porter920 • updated 10 months ago by pierre.peterlongo830
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Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 11 months ago by kennethlim2060 • updated 11 months ago by Brian Bushnell15k
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 12 months ago by cjaln0 • updated 12 months ago by John Marshall1.2k
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