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Why Does Mpileup Skip some variants ?
call mpileup variants written 1 day ago by sami0 • updated 1 day ago by RamRS28k
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MAPQ mapping quality
snp mpileup call written 1 day ago by sami0
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SNPs and DEL/MNP in the same position. (DEL or SNP ??)
vcf indels calls snp mpileup written 8 days ago by sami0 • updated 8 days ago by RamRS28k
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Why does samtools mpileup skip positions?
samtools mpileup written 9 days ago by m.wekking10 • updated 9 days ago by Istvan Albert ♦♦ 84k
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Bcftools Mpileup bias for alternative alleles?
gatk bcftools mpileup snp written 12 weeks ago by cetin.m50 • updated 12 weeks ago by Kevin Blighe63k
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5 follow
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Per Sample Mpileup Output From Merged Bam File
samtools mpileup written 6.7 years ago by thomasvangurp10 • updated 3 months ago by wkretzsch0
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Generate VCF from different .bam files with different chromosome names
vcf bcftools mpileup written 4 months ago by ctdarwell0 • updated 4 months ago by Kevin Blighe63k
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Exclamation mark in Samtools mpileup output
bam samtools mapping mpileup written 5 months ago by pr10 • updated 5 months ago by gb1.9k
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in bcftools mpileup output, the DP number is not equal to depth in I16 tag
i16 bcftools mpileup written 8 months ago by wm470 • updated 8 months ago by harold.smith.tarheel4.6k
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How to reconstruct reads or bam file from pileup
alignment samtools mpileup bam written 10 months ago by SSK10 • updated 10 months ago by h.mon30k
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.bam mpileup mapping quality
samtools mapq mpileup sanger fastq written 11 months ago by saar.armon0 • updated 10 months ago by jkbonfield400
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Consensus sequence from multiple BAM files on a single position
bam samtools mpileup written 10 months ago by Federico Giorgi610 • updated 10 months ago by jkbonfield400
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Command line explain
bcftools mpileup written 12 months ago by f1978hp30 • updated 12 months ago by finswimmer13k
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Samtools mpileup with 10x data
samtools mpileup written 14 months ago by lali10
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