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<prev • 210 results • page 1 of 7 • next >
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in bcftools mpileup output, the DP number is not equal to depth in I16 tag
i16 bcftools mpileup written 13 days ago by wm • 130 • updated 1 day ago by harold.smith.tarheel • 4.5k
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0
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68
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0
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Shall I change bcftools mpileup max depth?
variant calliing bcftools sampling mpileup written 4 weeks ago by marongiu.luigi • 420
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0
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89
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0
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bcftools mpileup with --region option output wrong consequence
bam bcftools mpileup snp written 5 weeks ago by SSK • 10
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1
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143
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1
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How to reconstruct reads or bam file from pileup
alignment samtools mpileup bam written 9 weeks ago by SSK • 10 • updated 9 weeks ago by h.mon ♦ 28k
1
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1
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127
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1
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.bam mpileup mapping quality
samtools mapq mpileup sanger fastq written 3 months ago by saar.armon • 0 • updated 12 weeks ago by jkbonfield • 220
1
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1
answer
147
views
1
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Consensus sequence from multiple BAM files on a single position
bam samtools mpileup written 12 weeks ago by Federico Giorgi • 540 • updated 12 weeks ago by jkbonfield • 220
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0
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315
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0
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Command line explain
bcftools mpileup written 4 months ago by f1978hp • 20 • updated 4 months ago by finswimmer ♦ 13k
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0
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113
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0
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Difference between mpileup and HaplotypeCaller -ERC BP_RESOLUTION
variant calling haplotypecaller mpileup written 4 months ago by CY • 460
4
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1
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240
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1
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Samtools mplileup detects wrong INDEL positions
variant calling samtools count nuceotides mpileup written 4 months ago by vit.filippo • 40 • updated 4 months ago by finswimmer ♦ 13k
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1
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196
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1
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How to calculate allele counts(Ref and alt) using a target bed file and aligned bam sample files
count allele samtools rna-seq mpileup written 5 months ago by prernagoel04 • 0 • updated 5 months ago by H.Hasani • 810
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0
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624
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Samtools mpileup with 10x data
samtools mpileup written 6 months ago by lali1 • 0
3
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1
answer
202
views
1
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Unexpected characters at consensus fasta generated by mpileup
samtools consensussequence mpileup written 6 months ago by gokberk • 60
2
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2
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587
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2
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Read position bias (RPB and PV4) fields from samtools mpileup: how to get them?
rpb variant mpileup snp call written 18 months ago by Macspider • 3.0k • updated 7 months ago by al.bodrug • 50
1
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381
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bcftools mpileup --max depth : What would be a reasonable setting for this option?
consensus bcftools mpileup written 7 months ago by Cookie-san • 40
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1
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260
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1
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Samtools mpileup - Sudden decrease of coverage at homopolymer regions
samtools mapping mpileup written 7 months ago by Louis Kok • 10 • updated 7 months ago by Kevin Blighe ♦ 52k
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0
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274
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0
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Are both samtools mpileup options -m and -F only related to indel detection?
next-gen alignment samtools mpileup snp written 9 months ago by serpalma.v • 20
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0
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320
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From mpileup on bam files to TMB calculation, how is it done?
snps bam mutations mpileup tmb written 9 months ago by Pin.Bioinf • 260
0
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0
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480
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0
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Multimapping reads intervention in SNP calling
alignment samtools snp mpileup written 11 months ago by sambioinfo2018 • 0 • updated 9 months ago by Biostar ♦♦ 20
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1
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2.9k
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1
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How do I calculate the total read depth and allele frequency using just the target bed file and aligned bam
bed frequency allele mpileup bam written 4.4 years ago by bobrowdy123 • 0 • updated 10 months ago by Biostar ♦♦ 20
1
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2
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3.4k
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2
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Mpileup Segmentation Fault
mpileup written 7.3 years ago by AW • 350 • updated 10 months ago by Biostar ♦♦ 20
0
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0
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532
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0
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SNP calling using samtools
rnaseq samtools bcftools snp mpileup written 11 months ago by ankit hinsu • 10 • updated 10 months ago by Biostar ♦♦ 20
2
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0
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594
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0
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getting the HOM_REF genotypes using bcftools mpileup+call ?
bcftools variant call mpileup genotype written 10 months ago by Pierre Lindenbaum ♦ 124k • updated 10 months ago by RamRS ♦ 25k
3
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0
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763
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Variant Calling (Samtools Mpileup): Error
variant calling samtools bcftools mpileup written 11 months ago by venuraherath • 20
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1.3k
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6 follow
0
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Confused about how to generate a consensus sequence after bwa
samtools bwa mpileup written 12 months ago by DNAngel • 40
2
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1
answer
827
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5 follow
1
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bcftools mpileup no output (empty calls.bcf file)
consensus bcftools samtools mpileup calls.bcf written 12 months ago by RobertUt • 30
1
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1
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492
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1
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bcftool (mpileup, call) extremely slow on 60 BAMs (WGS 20x)
bcftools samtools mpileup snp wgs written 12 months ago by serpalma.v • 20
2
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1
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524
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1
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I16 Info Tag
bcftools snp mpileup sequencing written 12 months ago by tbb21 • 10 • updated 12 months ago by finswimmer ♦ 13k
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2
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12k
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12 follow
2
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How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
vcftools mpileup written 7.9 years ago by Deniz • 50 • updated 12 months ago by zx8754 ♦ 8.8k
3
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1
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868
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1
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How to read an mpileup file from Samtools into Python
python next-gen samtools mpileup written 13 months ago by M.O.L.S • 10
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0
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808
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Using samtools to assess the number of reads that cover a variant position, as well as the ratio of ref/alt among those reads
allele balance bam samtools rna-seq mpileup written 13 months ago by claudiadast • 0
<prev • 210 results • page 1 of 7 • next >
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