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Extract Base Based On Position From Bam File
samtools mpileup written 8.4 years ago by Empyrean160 • updated 21 days ago by nickhir20
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Best Practices / Faster Samtools Mpileup, Any Tips?
samtools mpileup written 8.4 years ago by Kevin640 • updated 3 months ago by wljlinksly50
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Weird Samtools Mpileup Error In Mplp_Func.
samtools mpileup error written 7.1 years ago by Shellfishgene50 • updated 3 months ago by Emad0
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229
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MAPQ mapping quality
snp mpileup call written 3 months ago by sami20
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SNPs and DEL/MNP in the same position. (DEL or SNP ??)
vcf indels calls snp mpileup written 3 months ago by sami20 • updated 3 months ago by RamRS30k
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Why does samtools mpileup skip positions?
samtools mpileup written 3 months ago by m.wekking10 • updated 3 months ago by Istvan Albert ♦♦ 85k
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Bcftools Mpileup bias for alternative alleles?
gatk bcftools mpileup snp written 6 months ago by cetin.m50 • updated 6 months ago by Kevin Blighe67k
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5 follow
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Per Sample Mpileup Output From Merged Bam File
samtools mpileup written 7.0 years ago by thomasvangurp10 • updated 6 months ago by wkretzsch0
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Generate VCF from different .bam files with different chromosome names
vcf bcftools mpileup written 8 months ago by ctdarwell0 • updated 8 months ago by Kevin Blighe67k
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2
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Exclamation mark in Samtools mpileup output
bam samtools mapping mpileup written 9 months ago by pr10 • updated 9 months ago by gb1.9k
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6 follow
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in bcftools mpileup output, the DP number is not equal to depth in I16 tag
i16 bcftools mpileup written 12 months ago by wm490 • updated 11 months ago by harold.smith.tarheel4.6k
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How to reconstruct reads or bam file from pileup
alignment samtools mpileup bam written 13 months ago by SSK10 • updated 13 months ago by h.mon31k
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.bam mpileup mapping quality
samtools mapq mpileup sanger fastq written 14 months ago by saar.armon0 • updated 14 months ago by jkbonfield430
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Consensus sequence from multiple BAM files on a single position
bam samtools mpileup written 14 months ago by Federico Giorgi630 • updated 14 months ago by jkbonfield430
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Command line explain
bcftools mpileup written 16 months ago by f1978hp30 • updated 16 months ago by finswimmer14k
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