Showing: mpileupreset
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Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 12 months ago by divya20 • updated 6 days ago by swbarnes23.8k
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Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 20 days ago by blur90 • updated 20 days ago by Devon Ryan81k
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Samtools mpileup returns empty vcf file
samtools mpileup written 29 days ago by shreyasibiswas8830 • updated 29 days ago by Ram15k
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Samtools mpileup meaning of IMF and IDV
vcf samtools mpileup written 2.9 years ago by cruckert810 • updated 8 weeks ago by elzedleeu0
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samtools mpileup output only contains vcf header
variant calling samtools mpileup written 11 weeks ago by s10206012510 • updated 10 weeks ago by swbarnes23.8k
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 3 months ago by Noam Teyssier10 • updated 3 months ago by Kevin Blighe24k
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error while using " samtools mpileup " function
headers read_group samtools mpileup error written 5 months ago by ricfoz20 • updated 5 months ago by Devon Ryan81k
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Why does mpileup tell me the starting and ending base of a read?
samtools mpileup written 17 months ago by Peavil10 • updated 5 months ago by Vasisht150
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 15 months ago by Biomonika (Noolean)3.0k • updated 7 months ago by tjduncan170
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Samtools mpileup: AF1 and DP4 not provided
samtools mpileup af1 info written 7 months ago by filippo.martignano0 • updated 7 months ago by Kevin Blighe24k
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Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 15 months ago by devin.porter920 • updated 8 months ago by pierre.peterlongo820
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Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 9 months ago by kennethlim2060 • updated 9 months ago by Brian Bushnell15k
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 10 months ago by cjaln0 • updated 10 months ago by John Marshall1.2k
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How to filter a multisample VCF based on individual sample depth?
vcf samtools mpileup gbs written 12 months ago by jtwalker20 • updated 12 months ago by Pierre Lindenbaum110k
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Read depth calling for X chromsome - script modification
read depth calling samtools mpileup written 2.0 years ago by mbhargava20030 • updated 13 months ago by Biostar ♦♦ 20
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samtools mpileup output documentation
samtools mpileup output written 14 months ago by bec10 • updated 14 months ago by James Bonfield120
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