Showing: mpileupreset
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Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 2.0 years ago by bruseq40 • updated 12 months ago by swbarnes26.0k
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Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 12 months ago by blur110 • updated 12 months ago by Devon Ryan91k
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Samtools mpileup returns empty vcf file
samtools mpileup written 13 months ago by shreyasibiswas8830 • updated 13 months ago by RamRS22k
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Samtools mpileup meaning of IMF and IDV
vcf samtools mpileup written 3.9 years ago by cruckert820 • updated 14 months ago by elzedleeu20
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samtools mpileup output only contains vcf header
variant calling samtools mpileup written 14 months ago by s10206012510 • updated 14 months ago by swbarnes26.0k
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 15 months ago by Noam Teyssier70 • updated 15 months ago by Kevin Blighe45k
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error while using " samtools mpileup " function
headers read_group samtools mpileup error written 17 months ago by ricfoz30 • updated 17 months ago by Devon Ryan91k
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Why does mpileup tell me the starting and ending base of a read?
samtools mpileup written 2.5 years ago by Peavil10 • updated 18 months ago by Vasisht160
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 2.2 years ago by Biomonika (Noolean)3.1k • updated 19 months ago by tjduncan230
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Samtools mpileup: AF1 and DP4 not provided
samtools mpileup af1 info written 20 months ago by filippo.martignano10 • updated 20 months ago by Kevin Blighe45k
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Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 2.2 years ago by devin.porter920 • updated 20 months ago by pierre.peterlongo840
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Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 21 months ago by kennethlim2060 • updated 21 months ago by Brian Bushnell16k
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 22 months ago by cjaln0 • updated 22 months ago by John Marshall1.6k
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How to filter a multisample VCF based on individual sample depth?
vcf samtools mpileup gbs written 2.0 years ago by jtwalker20 • updated 2.0 years ago by Pierre Lindenbaum121k
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Read depth calling for X chromsome - script modification
read depth calling samtools mpileup written 3.0 years ago by mbhargava20030 • updated 2.1 years ago by Biostar ♦♦ 20
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samtools mpileup output documentation
samtools mpileup output written 2.2 years ago by bec30 • updated 2.1 years ago by James Bonfield130
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emtpy bcf file
alignment samtools mpileup written 2.4 years ago by Illinu90
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