Showing: mpileupreset
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19
votes
8
answers
14k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 3.4 years ago by komal.rathi2.9k • updated 2.5 years ago by inesdesantiago130
4
votes
6
answers
9.6k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 3.4 years ago by tayebwajb80 • updated 18 months ago by vladimir.kovacevic40
12
votes
5
answers
8.5k
views
10 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 5.2 years ago by Empyrean150 • updated 10 months ago by stephanieP0
14
votes
3
answers
15k
views
7 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 6.1 years ago by Tiffani120 • updated 6.1 years ago by Chris Miller18k
4
votes
3
answers
5.5k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 6.1 years ago by Haiping100 • updated 21 months ago by Biostar ♦♦ 20
23
votes
3
answers
3.0k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 5.8 years ago by User 808720 • updated 5.4 years ago by Frédéric Mahé2.6k
7
votes
3
answers
8.5k
views
11 follow
3
answers
1
vote
3
answers
1.9k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 5.5 years ago by User 187410 • updated 5.5 years ago by Pierre Lindenbaum96k
5
votes
3
answers
1.9k
views
3
answers
Some Help Understanding With Mpileup Output
samtools mpileup written 5.0 years ago by Lee Katz2.8k • updated 3.1 years ago by swbarnes22.8k
0
votes
3
answers
1.5k
views
3
answers
Mpileup -D And -S
vcf mpileup written 4.8 years ago by GPR280 • updated 4.8 years ago by swbarnes22.8k
3
votes
3
answers
1.3k
views
3
answers
6
votes
3
answers
3.4k
views
3
answers
Parsing Base String From Samtools Mpileup
samtools mpileup written 4.1 years ago by Noushin N390 • updated 13 months ago by kartong880
5
votes
3
answers
3.1k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 3.8 years ago by pm201350 • updated 3.7 years ago by tayebwajb80
13
votes
3
answers
4.4k
views
5 follow
3
answers
3
votes
3
answers
3.1k
views
3
answers
Parallelized mpileup script
mpileup parallelized multithreaded xargs written 2.4 years ago by Lee Katz2.8k • updated 2.1 years ago by sun.nation90
4
votes
3
answers
769
views
3
answers
3
votes
3
answers
593
views
3
answers
14
votes
2
answers
11k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 6.5 years ago by Ian4.9k • updated 6.5 years ago by lh330k
7
votes
2
answers
8.9k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 6.2 years ago by Sam30 • updated 6.2 years ago by Nina320
11
votes
2
answers
2.9k
views
2
answers
Mpileup Variant Call
mpileup written 6.1 years ago by Tiffani120 • updated 6.1 years ago by lh330k
2
votes
2
answers
2.9k
views
2
answers
Samtools Mpileup On Single Bam With Multiple Samples
barcode bam samtools sam mpileup written 6.0 years ago by Danielk530 • updated 6.0 years ago by Pablo1.8k
4
votes
2
answers
9.5k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 5.7 years ago by Sortinghat10 • updated 21 months ago by Biostar ♦♦ 20
1
vote
2
answers
2.1k
views
2
answers
Samtools Mpileup Options
mpileup written 5.5 years ago by Info_Nowise10 • updated 5.5 years ago by Bdrog0
5
votes
2
answers
3.5k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 5.4 years ago by Vittorio Fortino20 • updated 7 months ago by Biostar ♦♦ 20
9
votes
2
answers
9.1k
views
8 follow
2
answers
9
votes
2
answers
4.6k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 5.0 years ago by matted6.5k • updated 5.0 years ago by Lee Katz2.8k
1
vote
2
answers
2.4k
views
2
answers
Mpileup Segmentation Fault
mpileup written 5.0 years ago by AW280
6
votes
2
answers
1.6k
views
2
answers
Samtools: Why Have I Been Using "View" Command For Mpileup
samtools mpileup written 4.9 years ago by axelwilhelm80 • updated 4.9 years ago by Istvan Albert ♦♦ 73k
5
votes
2
answers
2.3k
views
2
answers
How To Interpret Funky Vcf Output?
vcf samtools bcftools mpileup rna-seq written 4.9 years ago by Dan D6.1k • updated 4.1 years ago by Biostar ♦♦ 20
1
vote
2
answers
1.2k
views
2
answers
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