Showing: mpileupreset
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19
votes
8
answers
17k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 4.2 years ago by komal.rathi3.2k • updated 3.2 years ago by inesdesantiago140
4
votes
6
answers
11k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 4.2 years ago by tayebwajb90 • updated 2.3 years ago by vladimir.kovacevic50
12
votes
5
answers
9.6k
views
10 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 5.9 years ago by Empyrean160 • updated 19 months ago by stephanieP0
16
votes
3
answers
18k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 6.9 years ago by Tiffani120 • updated 6.9 years ago by Chris Miller19k
4
votes
3
answers
6.1k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 6.8 years ago by Haiping100 • updated 2.5 years ago by Biostar ♦♦ 20
24
votes
3
answers
3.4k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 6.6 years ago by User 808720 • updated 6.1 years ago by Frédéric Mahé2.7k
9
votes
3
answers
9.6k
views
12 follow
3
answers
1
vote
3
answers
2.1k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 6.2 years ago by User 187410 • updated 6.2 years ago by Pierre Lindenbaum107k
5
votes
3
answers
2.2k
views
3
answers
Some Help Understanding With Mpileup Output
samtools mpileup written 5.8 years ago by Lee Katz2.9k • updated 3.9 years ago by swbarnes23.5k
1
vote
3
answers
1.8k
views
3
answers
Mpileup -D And -S
vcf mpileup written 5.5 years ago by GPR310 • updated 5.5 years ago by swbarnes23.5k
3
votes
3
answers
1.6k
views
3
answers
6
votes
3
answers
3.8k
views
3
answers
Parsing Base String From Samtools Mpileup
samtools mpileup written 4.9 years ago by Noushin N520 • updated 22 months ago by kartong880
5
votes
3
answers
3.4k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 4.5 years ago by pm201350 • updated 4.5 years ago by tayebwajb90
15
votes
3
answers
5.4k
views
5 follow
3
answers
3
votes
3
answers
4.0k
views
3
answers
Parallelized mpileup script
mpileup parallelized multithreaded xargs written 3.2 years ago by Lee Katz2.9k • updated 2.8 years ago by sun.nation90
4
votes
3
answers
1.0k
views
3
answers
3
votes
3
answers
2.4k
views
3
answers
14
votes
2
answers
12k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 7.2 years ago by Ian5.2k • updated 7.2 years ago by lh330k
7
votes
2
answers
9.9k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 7.0 years ago by Sam30 • updated 7.0 years ago by Nina330
11
votes
2
answers
3.2k
views
2
answers
Mpileup Variant Call
mpileup written 6.9 years ago by Tiffani120 • updated 6.9 years ago by lh330k
2
votes
2
answers
3.3k
views
2
answers
Samtools Mpileup On Single Bam With Multiple Samples
barcode bam samtools sam mpileup written 6.7 years ago by Danielk550 • updated 6.7 years ago by Pablo1.9k
4
votes
2
answers
10k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 6.5 years ago by Sortinghat10 • updated 2.5 years ago by Biostar ♦♦ 20
1
vote
2
answers
2.4k
views
2
answers
Samtools Mpileup Options
mpileup written 6.2 years ago by Info_Nowise10 • updated 6.2 years ago by Bdrog0
5
votes
2
answers
4.0k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 6.2 years ago by Vittorio Fortino20 • updated 16 months ago by Biostar ♦♦ 20
11
votes
2
answers
10k
views
10 follow
2
answers
9
votes
2
answers
5.3k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 5.8 years ago by matted6.7k • updated 5.8 years ago by Lee Katz2.9k
1
vote
2
answers
2.8k
views
2
answers
Mpileup Segmentation Fault
mpileup written 5.7 years ago by AW350
6
votes
2
answers
1.9k
views
2
answers
Samtools: Why Have I Been Using "View" Command For Mpileup
samtools mpileup written 5.6 years ago by axelwilhelm100 • updated 5.6 years ago by Istvan Albert ♦♦ 76k
5
votes
2
answers
2.7k
views
2
answers
How To Interpret Funky Vcf Output?
vcf samtools bcftools mpileup rna-seq written 5.6 years ago by Dan D6.4k • updated 4.9 years ago by Biostar ♦♦ 20
1
vote
2
answers
1.4k
views
2
answers
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